Wall clock time and date at job start Fri Apr 10 2020 18:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00169 * 2 1 4 4 C 1.53000 * 109.47282 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47430 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.47305 * 179.97438 * 5 4 3 7 7 C 1.34288 * 125.74835 * 124.99849 * 6 5 4 8 8 C 1.38105 * 107.40376 * 180.02562 * 7 6 5 9 9 C 1.47359 * 126.42349 * 179.97438 * 8 7 6 10 10 O 1.21629 * 119.99777 * 5.81523 * 9 8 7 11 11 N 1.34777 * 120.00100 * 185.81002 * 9 8 7 12 12 C 1.36982 * 119.99844 * 5.26896 * 11 9 8 13 13 H 1.07990 * 120.00485 * 47.86143 * 12 11 9 14 14 C 1.38978 * 119.99280 * 228.14384 * 12 11 9 15 15 N 1.31413 * 119.99620 * 203.45471 * 14 12 11 16 16 Si 1.86795 * 120.00364 * 23.45208 * 14 12 11 17 17 H 1.48498 * 109.47337 * 86.51526 * 16 14 12 18 18 H 1.48504 * 109.47097 * 206.51101 * 16 14 12 19 19 H 1.48504 * 109.47259 * 326.51154 * 16 14 12 20 20 C 1.46500 * 119.99734 * 185.25844 * 11 9 8 21 21 C 1.50697 * 109.47314 * 274.56419 * 20 11 9 22 22 O 1.20824 * 119.99946 * 359.97438 * 21 20 11 23 23 O 1.34233 * 119.99937 * 180.02562 * 21 20 11 24 24 C 1.45198 * 116.99855 * 180.02562 * 23 21 20 25 25 C 1.41318 * 107.15863 * 0.23904 * 8 7 6 26 26 N 1.30450 * 108.02605 * 359.59311 * 25 8 7 27 27 H 1.08999 * 109.46761 * 300.00795 * 1 2 3 28 28 H 1.09000 * 109.46496 * 60.00410 * 1 2 3 29 29 H 1.08994 * 109.47484 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47567 * 59.99292 * 3 2 1 31 31 H 1.09009 * 109.47128 * 299.99467 * 3 2 1 32 32 H 1.09002 * 109.47474 * 59.99141 * 4 3 2 33 33 H 1.09004 * 109.46931 * 299.99486 * 4 3 2 34 34 H 1.09001 * 109.47207 * 59.99852 * 5 4 3 35 35 H 1.08996 * 109.46972 * 299.99507 * 5 4 3 36 36 H 1.08006 * 126.29839 * 0.03674 * 7 6 5 37 37 H 0.97001 * 120.00048 * 179.97438 * 15 14 12 38 38 H 1.08995 * 109.47166 * 34.57070 * 20 11 9 39 39 H 1.08997 * 109.46541 * 154.56750 * 20 11 9 40 40 H 1.09002 * 109.47247 * 180.02562 * 24 23 21 41 41 H 1.09012 * 109.46918 * 299.99363 * 24 23 21 42 42 H 1.08999 * 109.47947 * 59.99084 * 24 23 21 43 43 H 1.08001 * 125.99064 * 179.76414 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5822 -0.0013 6 7 5.6183 2.4665 -0.0013 7 6 6.4497 3.0273 -0.8944 8 6 7.7368 2.6749 -0.5385 9 6 8.9751 3.0650 -1.2355 10 8 8.9292 3.8501 -2.1633 11 7 10.1586 2.5518 -0.8449 12 6 10.1995 1.5874 0.1270 13 1 9.5375 0.7361 0.0713 14 6 11.0892 1.7076 1.1879 15 7 11.4733 0.6379 1.8477 16 14 11.7391 3.3894 1.6761 17 1 10.7929 4.0296 2.6248 18 1 13.0655 3.2379 2.3266 19 1 11.8757 4.2379 0.4650 20 6 11.4011 3.0253 -1.4599 21 6 11.6597 2.2537 -2.7282 22 8 10.8858 1.3959 -3.0819 23 8 12.7503 2.5187 -3.4645 24 6 12.9350 1.7368 -4.6740 25 6 7.6433 1.8650 0.6158 26 7 6.3819 1.7526 0.9289 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.8568 0.6437 -0.8908 33 1 3.8575 0.6435 0.8892 34 1 3.8367 3.1234 0.8887 35 1 3.8359 3.1228 -0.8913 36 1 6.1644 3.6411 -1.7360 37 1 12.0945 0.7217 2.5880 38 1 11.3101 4.0863 -1.6922 39 1 12.2294 2.8747 -0.7677 40 1 13.8520 2.0505 -5.1729 41 1 13.0054 0.6800 -4.4162 42 1 12.0867 1.8924 -5.3405 43 1 8.4712 1.4196 1.1474 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599537406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:19 Heat of formation + Delta-G solvation = -86.739397 kcal Electronic energy + Delta-G solvation = -27652.497143 eV Core-core repulsion = 23507.363674 eV Total energy + Delta-G solvation = -4145.133469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24540 -41.49472 -39.99336 -38.96061 -37.47055 -36.70599 -35.70616 -34.00570 -32.22573 -31.41508 -30.11804 -28.22420 -27.66834 -26.89084 -26.01014 -23.38329 -23.19949 -22.21386 -21.42975 -20.79406 -19.53487 -18.86944 -18.27721 -17.59186 -17.37994 -17.26046 -17.02838 -16.92349 -16.72282 -16.30026 -15.91607 -15.73578 -15.38172 -14.89038 -14.84624 -14.55681 -14.50655 -14.21762 -13.97813 -13.63372 -13.21870 -13.19326 -13.14386 -12.92994 -12.82834 -12.72641 -12.42545 -12.17671 -12.07139 -11.84558 -11.76836 -11.74493 -11.49217 -11.02050 -10.63166 -10.57664 -10.35858 -9.74659 -9.43906 -8.49225 -6.20833 0.66823 1.23163 1.31518 1.33308 1.47370 1.50353 1.55308 1.75863 2.24321 2.55147 2.69541 2.80452 3.04731 3.66315 3.92353 3.95583 4.00929 4.10468 4.12204 4.19503 4.31083 4.32910 4.34587 4.34831 4.40920 4.47437 4.50739 4.55349 4.56194 4.67229 4.74913 4.85881 4.98390 5.02334 5.13330 5.31256 5.39921 5.75137 6.06255 6.09642 6.19683 6.24315 6.73983 6.81125 6.97239 7.35168 7.73686 8.62125 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.003146 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.403659 B = 8899.283069 C = 9925.536332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.069 3.931 4 C -0.127 4.127 5 C 0.131 3.869 6 N -0.362 5.362 7 C 0.123 3.877 8 C -0.297 4.297 9 C 0.568 3.432 10 O -0.616 6.616 11 N -0.457 5.457 12 C -0.346 4.346 13 H 0.075 0.925 14 C 0.040 3.960 15 N -0.882 5.882 16 Si 0.912 3.088 17 H -0.274 1.274 18 H -0.271 1.271 19 H -0.235 1.235 20 C 0.114 3.886 21 C 0.450 3.550 22 O -0.530 6.530 23 O -0.365 6.365 24 C 0.028 3.972 25 C 0.087 3.913 26 N -0.335 5.335 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.212 0.788 37 H 0.283 0.717 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.141 0.859 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.453 6.274 -4.601 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.008 4.008 4 C -0.165 4.165 5 C 0.012 3.988 6 N -0.141 5.141 7 C -0.029 4.029 8 C -0.311 4.311 9 C 0.361 3.639 10 O -0.503 6.503 11 N -0.178 5.178 12 C -0.473 4.473 13 H 0.092 0.908 14 C -0.167 4.167 15 N -0.517 5.517 16 Si 0.734 3.266 17 H -0.200 1.200 18 H -0.196 1.196 19 H -0.158 1.158 20 C -0.010 4.010 21 C 0.292 3.708 22 O -0.418 6.418 23 O -0.281 6.281 24 C -0.065 4.065 25 C -0.098 4.098 26 N -0.155 5.155 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.229 0.771 37 H 0.093 0.907 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.159 0.841 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -13.458 5.605 -4.197 15.171 hybrid contribution 1.016 0.274 -0.206 1.073 sum -12.442 5.879 -4.402 14.448 Atomic orbital electron populations 1.22928 0.79118 1.03725 1.01196 1.87857 1.21845 1.29124 1.95706 1.22433 0.91381 0.84662 1.02325 1.21654 0.95048 0.96706 1.03131 1.21976 0.71924 0.97996 1.06883 1.48784 1.07762 1.37444 1.20066 1.23205 0.88640 0.96262 0.94792 1.20201 0.93521 1.13516 1.03879 1.17794 0.83837 0.79541 0.82682 1.90575 1.87754 1.39509 1.32461 1.43068 1.03131 1.37093 1.34499 1.18752 1.25274 1.01374 1.01891 0.90753 1.26012 0.95453 1.00022 0.95166 1.69881 1.30243 1.30260 1.21293 0.86377 0.78359 0.81319 0.80537 1.19964 1.19615 1.15775 1.21648 0.90791 0.98912 0.89695 1.24918 0.78301 0.81805 0.85781 1.90595 1.47514 1.32891 1.70771 1.86495 1.43487 1.61083 1.37055 1.23522 1.04102 0.95529 0.83321 1.25361 0.94264 0.95011 0.95196 1.77129 1.04044 1.19352 1.15013 0.92835 0.92642 0.89094 0.91208 0.90643 0.92245 0.92141 0.87537 0.84525 0.77098 0.90662 0.86095 0.86275 0.84144 0.92663 0.92533 0.78117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.43 -8.96 10.70 -148.98 -1.59 -10.55 16 3 C 0.07 1.09 5.94 71.98 0.43 1.51 16 4 C -0.13 -2.74 5.76 30.59 0.18 -2.57 16 5 C 0.13 2.51 6.49 86.38 0.56 3.07 16 6 N -0.36 -11.34 3.65 -346.23 -1.26 -12.60 16 7 C 0.12 4.21 11.26 84.29 0.95 5.15 16 8 C -0.30 -13.05 6.01 -20.15 -0.12 -13.17 16 9 C 0.57 27.72 7.47 86.64 0.65 28.36 16 10 O -0.62 -30.96 16.62 -4.12 -0.07 -31.02 16 11 N -0.46 -22.44 1.47 -643.39 -0.94 -23.38 16 12 C -0.35 -18.03 6.57 84.07 0.55 -17.48 16 13 H 0.08 4.33 6.30 -2.92 -0.02 4.31 16 14 C 0.04 2.04 5.11 84.93 0.43 2.47 16 15 N -0.88 -47.22 13.96 21.67 0.30 -46.91 16 16 Si 0.91 38.21 26.63 68.60 1.83 40.03 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.23 -9.02 5.37 99.48 0.53 -8.48 16 20 C 0.11 4.98 3.98 85.63 0.34 5.33 16 21 C 0.45 19.81 7.99 71.23 0.57 20.38 16 22 O -0.53 -26.99 16.08 21.97 0.35 -26.64 16 23 O -0.36 -13.07 10.57 -51.45 -0.54 -13.62 16 24 C 0.03 0.78 10.56 113.37 1.20 1.97 16 25 C 0.09 3.93 10.17 85.66 0.87 4.80 16 26 N -0.33 -13.41 12.33 -56.25 -0.69 -14.10 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.64 16 34 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.14 1.53 8.06 -2.39 -0.02 1.51 16 36 H 0.21 5.59 8.06 -2.91 -0.02 5.56 16 37 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.12 4.84 7.59 -2.39 -0.02 4.82 16 39 H 0.12 4.89 5.07 -2.39 -0.01 4.88 16 40 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.05 1.56 8.13 -2.38 -0.02 1.54 16 42 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 43 H 0.20 9.97 4.95 -2.91 -0.01 9.95 16 Total: -1.00 -74.83 367.78 6.08 -68.74 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.86 Total: 28.62 kcal Atomic # 6 Polarization: 33.58 SS G_CDS: 7.85 Total: 41.43 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -2.60 Total: -97.00 kcal Atomic # 8 Polarization: -79.98 SS G_CDS: -1.85 Total: -81.83 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.83 Total: 40.03 kcal Total: -74.83 6.08 -68.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599537406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.995 kcal (2) G-P(sol) polarization free energy of solvation -74.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds