Wall clock time and date at job start Fri Apr 10 2020 18:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.47032 * 2 1 4 4 N 1.27973 * 125.05101 * 89.97970 * 3 2 1 5 5 N 1.37939 * 115.11484 * 180.02562 * 4 3 2 6 6 H 0.97000 * 122.81118 * 179.97438 * 5 4 3 7 7 C 1.33666 * 114.37899 * 359.97438 * 5 4 3 8 8 N 1.33186 * 125.24272 * 179.97438 * 7 5 4 9 9 C 1.33570 * 120.00321 * 180.02562 * 8 7 5 10 10 O 1.21884 * 120.00015 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99994 * 180.02562 * 9 8 7 12 12 C 1.47087 * 120.88214 * 359.71618 * 11 9 8 13 13 C 1.53697 * 108.27463 * 128.75862 * 12 11 9 14 14 N 1.46898 * 109.25962 * 54.08436 * 13 12 11 15 15 C 1.46895 * 111.00201 * 172.60653 * 14 13 12 16 16 C 1.50701 * 109.47284 * 294.30310 * 15 14 13 17 17 H 1.08000 * 119.99554 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99920 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99572 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00169 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46756 * 90.00439 * 20 18 16 22 22 H 1.48497 * 109.47289 * 209.99763 * 20 18 16 23 23 H 1.48498 * 109.47342 * 330.00403 * 20 18 16 24 24 C 1.46897 * 111.26867 * 296.75922 * 14 13 12 25 25 C 1.47080 * 120.88437 * 180.02562 * 11 9 8 26 26 S 1.70868 * 109.52412 * 359.97438 * 7 5 4 27 27 H 1.09002 * 109.46436 * 299.99946 * 1 2 3 28 28 H 1.08991 * 109.46892 * 59.99842 * 1 2 3 29 29 H 1.09003 * 109.47108 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46436 * 240.00054 * 2 1 3 31 31 H 1.09005 * 109.47073 * 120.00338 * 2 1 3 32 32 H 1.08998 * 109.63101 * 248.52939 * 12 11 9 33 33 H 1.08996 * 109.62432 * 9.10987 * 12 11 9 34 34 H 1.09000 * 109.64605 * 294.07817 * 13 12 11 35 35 H 1.09003 * 109.43860 * 173.96528 * 13 12 11 36 36 H 1.09003 * 109.47151 * 54.30404 * 15 14 13 37 37 H 1.09002 * 109.47148 * 174.30264 * 15 14 13 38 38 H 0.97000 * 119.99909 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.49049 * 303.14103 * 24 14 13 40 40 H 1.08998 * 109.49728 * 183.06700 * 24 14 13 41 41 H 1.09004 * 109.62217 * 350.89280 * 25 11 9 42 42 H 1.09000 * 109.63334 * 111.47216 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2770 2.1139 1.0476 5 7 2.7294 3.3950 0.8096 6 1 2.9483 4.0160 1.5219 7 6 2.8411 3.7092 -0.4848 8 7 3.2553 4.8833 -0.9577 9 6 3.3267 5.0847 -2.2763 10 8 3.0131 4.1937 -3.0466 11 7 3.7464 6.2726 -2.7548 12 6 4.1247 7.3628 -1.8427 13 6 5.5134 7.8763 -2.2553 14 7 5.4933 8.2372 -3.6791 15 6 6.7460 8.8955 -4.0731 16 6 6.8634 10.2189 -3.3618 17 1 6.0854 10.5387 -2.6845 18 6 7.9640 11.0213 -3.5758 19 7 8.0666 12.1760 -2.9547 20 14 9.3099 10.4677 -4.7469 21 1 9.0024 10.9494 -6.1176 22 1 10.6119 11.0292 -4.3055 23 1 9.3855 8.9846 -4.7487 24 6 5.2270 7.0643 -4.5224 25 6 3.8319 6.5157 -4.2028 26 16 2.3705 2.3725 -1.4395 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.3961 8.1702 -1.9151 33 1 4.1603 6.9885 -0.8197 34 1 6.2568 7.0969 -2.0880 35 1 5.7668 8.7542 -1.6610 36 1 7.5903 8.2614 -3.8026 37 1 6.7463 9.0608 -5.1505 38 1 8.8408 12.7407 -3.1055 39 1 5.9745 6.2962 -4.3237 40 1 5.2723 7.3533 -5.5724 41 1 3.6738 5.5809 -4.7408 42 1 3.0757 7.2434 -4.4973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602763748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:33 Heat of formation + Delta-G solvation = 42.831861 kcal Electronic energy + Delta-G solvation = -24889.623721 eV Core-core repulsion = 21225.154505 eV Total energy + Delta-G solvation = -3664.469216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77018 -41.18464 -39.33498 -36.50901 -35.90017 -34.60075 -34.36693 -32.21139 -31.45030 -30.46007 -27.72858 -26.52487 -25.05725 -24.69157 -23.65416 -22.54786 -21.28154 -21.01502 -19.69221 -18.94610 -18.48041 -18.32185 -17.48708 -17.27451 -16.54385 -16.24439 -16.04908 -15.77891 -15.58303 -15.43125 -15.17844 -14.88822 -14.54397 -14.43381 -13.82649 -13.75321 -13.61747 -13.18016 -12.91910 -12.66549 -12.54546 -12.43683 -12.33899 -12.29395 -12.26405 -12.11985 -11.87905 -11.82131 -11.44209 -11.15955 -10.89818 -10.78095 -10.53184 -10.04088 -9.31738 -9.04888 -8.28316 -6.31527 -0.39011 -0.38313 0.26694 0.36666 1.03292 1.34712 1.35785 1.46139 1.92754 2.33912 2.35187 3.03690 3.10987 3.15821 3.66028 3.86667 3.99420 4.05854 4.18002 4.29414 4.29935 4.31339 4.38242 4.60160 4.72560 4.78251 4.80295 4.86645 4.91927 5.00715 5.04531 5.07110 5.10629 5.37656 5.42045 5.45773 5.51574 5.65266 5.92239 6.20889 6.25801 6.40851 6.59884 6.74310 7.31773 7.36667 8.87807 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.033147 B = 0.002386 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.520621 B =11729.847236 C =12055.115754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 C 0.030 3.970 4 N -0.233 5.233 5 N -0.476 5.476 6 H 0.458 0.542 7 C 0.352 3.648 8 N -0.638 5.638 9 C 0.669 3.331 10 O -0.617 6.617 11 N -0.594 5.594 12 C 0.137 3.863 13 C 0.056 3.944 14 N -0.539 5.539 15 C 0.172 3.828 16 C -0.515 4.515 17 H 0.043 0.957 18 C 0.009 3.991 19 N -0.945 5.945 20 Si 0.946 3.054 21 H -0.263 1.263 22 H -0.282 1.282 23 H -0.256 1.256 24 C 0.042 3.958 25 C 0.137 3.863 26 S 0.205 5.795 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.017 0.983 35 H 0.076 0.924 36 H -0.017 1.017 37 H 0.034 0.966 38 H 0.267 0.733 39 H 0.022 0.978 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.071 -28.426 5.976 32.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.082 4.082 3 C -0.269 4.269 4 N -0.048 5.048 5 N -0.204 5.204 6 H 0.308 0.692 7 C -0.029 4.029 8 N -0.400 5.400 9 C 0.367 3.633 10 O -0.502 6.502 11 N -0.327 5.327 12 C 0.014 3.986 13 C -0.073 4.073 14 N -0.263 5.263 15 C 0.045 3.955 16 C -0.553 4.553 17 H 0.061 0.939 18 C -0.188 4.188 19 N -0.586 5.586 20 Si 0.769 3.231 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.180 1.180 24 C -0.087 4.087 25 C 0.014 3.986 26 S 0.438 5.562 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.036 0.964 35 H 0.094 0.906 36 H 0.001 0.999 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.318 -27.898 5.561 32.309 hybrid contribution 1.746 0.607 0.443 1.901 sum -13.572 -27.291 6.004 31.065 Atomic orbital electron populations 1.21818 0.92182 1.04396 1.02436 1.20542 0.97485 0.83218 1.06985 1.29732 0.98859 1.04036 0.94253 1.74533 1.15628 0.90291 1.24322 1.46104 1.58141 1.11614 1.04518 0.69221 1.24808 0.90896 0.95894 0.91260 1.68172 1.38233 1.18117 1.15443 1.16753 0.78647 0.83005 0.84850 1.90710 1.56876 1.42745 1.59858 1.47090 1.66129 1.11624 1.07842 1.21803 0.94599 0.88306 0.93934 1.22377 0.95965 0.98808 0.90123 1.61828 1.36191 1.25137 1.03171 1.19952 0.86397 0.92980 0.96197 1.21220 1.05584 1.02384 1.26093 0.93857 1.25808 1.00601 0.94715 0.97722 1.70042 1.31134 1.12513 1.44900 0.85739 0.78303 0.79461 0.79561 1.18779 1.20813 1.18005 1.22545 0.96059 0.91155 0.98956 1.21704 0.96586 1.01546 0.78806 1.86916 1.65208 1.00872 1.03187 0.92696 0.92341 0.88664 0.86364 0.86760 0.90963 0.87698 0.96442 0.90560 0.99914 0.94786 0.92426 0.95968 0.88323 0.88290 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.90 71.98 0.71 0.04 16 2 C -0.04 -0.22 6.54 29.85 0.20 -0.02 16 3 C 0.03 0.40 6.87 88.67 0.61 1.01 16 4 N -0.23 -3.71 12.07 -48.74 -0.59 -4.30 16 5 N -0.48 -8.74 6.83 -60.92 -0.42 -9.15 16 6 H 0.46 6.70 8.96 -214.68 -1.92 4.77 16 7 C 0.35 8.51 8.16 179.89 1.47 9.98 16 8 N -0.64 -19.13 9.09 -330.54 -3.00 -22.13 16 9 C 0.67 22.61 8.22 179.43 1.48 24.09 16 10 O -0.62 -21.57 13.08 -4.94 -0.06 -21.63 16 11 N -0.59 -19.95 3.00 -835.78 -2.51 -22.46 16 12 C 0.14 4.59 6.62 86.50 0.57 5.17 16 13 C 0.06 2.25 5.47 86.54 0.47 2.72 16 14 N -0.54 -22.71 4.62 -898.81 -4.15 -26.87 16 15 C 0.17 8.32 3.79 85.56 0.32 8.64 16 16 C -0.51 -29.68 8.96 25.60 0.23 -29.45 16 17 H 0.04 2.76 7.37 -2.91 -0.02 2.74 16 18 C 0.01 0.53 5.47 84.65 0.46 0.99 16 19 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 20 Si 0.95 44.27 27.47 68.60 1.88 46.16 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 23 H -0.26 -11.38 6.54 99.48 0.65 -10.72 16 24 C 0.04 1.44 5.62 86.40 0.49 1.92 16 25 C 0.14 4.26 6.60 86.36 0.57 4.83 16 26 S 0.20 4.12 19.94 -56.49 -1.13 2.99 16 27 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.10 3.29 6.90 -2.39 -0.02 3.28 16 34 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 3.40 6.67 -2.39 -0.02 3.39 16 36 H -0.02 -0.83 7.18 -2.39 -0.02 -0.85 16 37 H 0.03 1.60 7.40 -2.39 -0.02 1.58 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.10 3.06 7.99 -2.39 -0.02 3.04 16 41 H 0.10 2.93 7.06 -2.38 -0.02 2.92 16 42 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -74.06 354.16 -3.03 -77.08 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -0.93 Total: 9.06 kcal Atomic # 6 Polarization: 22.33 SS G_CDS: 7.58 Total: 29.91 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -10.37 Total: -143.57 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.06 Total: -21.63 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.13 Total: 2.99 kcal Total: -74.06 -3.03 -77.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602763748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.915 kcal (2) G-P(sol) polarization free energy of solvation -74.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds