Wall clock time and date at job start Fri Apr 10 2020 18:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86794 * 119.99886 * 2 1 4 4 H 1.48495 * 109.47546 * 270.00190 * 3 2 1 5 5 H 1.48504 * 109.47288 * 30.00368 * 3 2 1 6 6 H 1.48507 * 109.47149 * 149.99882 * 3 2 1 7 7 C 1.38947 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00276 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99475 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00231 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.46845 * 111.00415 * 71.27727 * 13 12 10 15 15 C 1.53034 * 109.52663 * 185.83607 * 14 13 12 16 16 C 1.53115 * 109.27914 * 300.82364 * 15 14 13 17 17 C 1.53111 * 109.16189 * 57.65548 * 16 15 14 18 18 C 1.46848 * 111.00295 * 195.48866 * 13 12 10 19 19 H 1.08996 * 109.46218 * 294.16933 * 18 13 12 20 20 C 1.53009 * 109.45962 * 54.14266 * 18 13 12 21 21 O 1.45203 * 109.46992 * 63.00039 * 20 18 13 22 22 C 1.34635 * 116.99594 * 180.02562 * 21 20 18 23 23 O 1.21504 * 120.00333 * 359.97438 * 22 21 20 24 24 N 1.34783 * 119.99625 * 180.02562 * 22 21 20 25 25 C 1.46497 * 119.99831 * 179.97438 * 24 22 21 26 26 C 1.52995 * 117.49779 * 223.61824 * 25 24 22 27 27 C 1.53000 * 117.49884 * 154.99425 * 25 24 22 28 28 H 0.97003 * 120.00136 * 359.97438 * 1 2 3 29 29 H 0.97004 * 120.00204 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46917 * 60.00189 * 12 10 9 31 31 H 1.08996 * 109.46734 * 299.99660 * 12 10 9 32 32 H 1.09003 * 109.46200 * 305.85810 * 14 13 12 33 33 H 1.09004 * 109.45843 * 65.82233 * 14 13 12 34 34 H 1.09008 * 109.50298 * 60.76610 * 15 14 13 35 35 H 1.09007 * 109.50230 * 180.83977 * 15 14 13 36 36 H 1.09003 * 109.51764 * 177.55741 * 16 15 14 37 37 H 1.08997 * 109.52036 * 297.67937 * 16 15 14 38 38 H 1.09001 * 109.50348 * 182.40263 * 17 16 15 39 39 H 1.09004 * 109.50833 * 62.28222 * 17 16 15 40 40 H 1.08997 * 109.47011 * 182.99911 * 20 18 13 41 41 H 1.09001 * 109.46956 * 303.00428 * 20 18 13 42 42 H 0.96997 * 119.99850 * 359.97438 * 24 22 21 43 43 H 1.09004 * 115.55267 * 9.32643 * 25 24 22 44 44 H 1.09001 * 117.49972 * 0.02562 * 26 25 24 45 45 H 1.09000 * 117.50037 * 145.02433 * 26 25 24 46 46 H 1.08999 * 117.50294 * 214.97726 * 27 25 24 47 47 H 1.09000 * 117.49709 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5579 -0.0026 11 8 3.2102 -3.5578 -0.0031 12 6 1.2438 -4.8630 -0.0032 13 7 2.1984 -5.9795 -0.0037 14 6 2.8749 -6.0942 1.2946 15 6 3.9611 -7.1690 1.2122 16 6 3.3211 -8.5062 0.8292 17 6 2.5826 -8.3468 -0.5025 18 6 1.5363 -7.2379 -0.3704 19 1 0.8165 -7.5081 0.4022 20 6 0.8092 -7.0613 -1.7051 21 8 1.7764 -6.7706 -2.7483 22 6 1.2964 -6.5857 -3.9925 23 8 0.1020 -6.6657 -4.2010 24 7 2.1408 -6.3131 -5.0070 25 6 1.6186 -6.1125 -6.3609 26 6 2.3704 -6.7800 -7.5142 27 6 2.4540 -5.2644 -7.3220 28 1 -0.4850 0.8401 0.0004 29 1 0.3534 -2.3907 -0.0024 30 1 0.6168 -4.9201 -0.8930 31 1 0.6176 -4.9213 0.8870 32 1 3.3292 -5.1376 1.5531 33 1 2.1487 -6.3696 2.0594 34 1 4.6952 -6.8874 0.4571 35 1 4.4530 -7.2642 2.1803 36 1 4.0968 -9.2652 0.7270 37 1 2.6163 -8.8078 1.6040 38 1 2.0890 -9.2841 -0.7594 39 1 3.2949 -8.0837 -1.2845 40 1 0.2739 -7.9783 -1.9513 41 1 0.1007 -6.2367 -1.6265 42 1 3.0943 -6.2496 -4.8406 43 1 0.5337 -6.0422 -6.4408 44 1 3.2534 -7.3687 -7.2655 45 1 1.7803 -7.1490 -8.3530 46 1 1.9190 -4.6364 -8.0343 47 1 3.3925 -4.8560 -6.9469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497251889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:10 Heat of formation + Delta-G solvation = -83.397256 kcal Electronic energy + Delta-G solvation = -28636.217347 eV Core-core repulsion = 24627.061899 eV Total energy + Delta-G solvation = -4009.155449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50090 -39.34813 -37.91227 -37.47134 -35.92145 -33.96684 -33.28166 -32.94476 -31.55912 -31.14746 -27.59949 -26.53653 -24.56381 -23.17047 -22.83404 -22.62770 -21.33136 -21.00204 -19.57116 -19.13282 -18.67844 -17.80716 -17.03566 -16.66834 -15.90972 -15.71867 -15.31630 -15.06733 -14.81482 -14.52612 -14.31363 -13.89852 -13.86720 -13.57726 -13.35992 -13.04454 -12.93494 -12.73055 -12.64417 -12.06262 -11.84011 -11.67743 -11.61956 -11.48145 -11.43182 -11.10025 -11.00726 -10.76038 -10.71875 -10.55933 -10.47593 -10.36874 -10.21388 -10.18178 -9.97319 -9.42714 -8.96851 -8.39478 -7.91687 -7.78901 -6.36935 -3.77567 2.12742 2.80873 3.20377 3.28524 3.34165 3.70724 3.89227 3.97359 4.11629 4.25661 4.52124 4.67200 4.69822 4.76183 4.76835 5.03016 5.09193 5.20427 5.27186 5.30997 5.35288 5.35509 5.38355 5.53365 5.60729 5.66740 5.70655 5.74013 5.82559 5.86984 5.88789 6.01138 6.06899 6.08717 6.29021 6.30195 6.33836 6.46011 6.49894 6.57187 7.32818 7.36380 7.44178 7.59297 8.11385 8.38229 8.67474 9.23237 9.60243 10.12589 10.81032 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007883 B = 0.004245 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3551.252069 B = 6593.977257 C = 9202.537897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.567 5.567 10 C 0.448 3.552 11 O -0.574 6.574 12 C 0.036 3.964 13 N -0.501 5.501 14 C 0.059 3.941 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.108 4.108 18 C 0.084 3.916 19 H 0.060 0.940 20 C 0.091 3.909 21 O -0.342 6.342 22 C 0.652 3.348 23 O -0.578 6.578 24 N -0.682 5.682 25 C 0.098 3.902 26 C -0.194 4.194 27 C -0.187 4.187 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.022 0.978 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.409 0.591 43 H 0.141 0.859 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 -17.197 -6.883 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.233 3.767 11 O -0.457 6.457 12 C -0.095 4.095 13 N -0.226 5.226 14 C -0.069 4.069 15 C -0.151 4.151 16 C -0.157 4.157 17 C -0.145 4.145 18 C -0.025 4.025 19 H 0.078 0.922 20 C 0.016 3.984 21 O -0.255 6.255 22 C 0.405 3.595 23 O -0.468 6.468 24 N -0.339 5.339 25 C -0.008 4.008 26 C -0.233 4.233 27 C -0.225 4.225 28 H 0.080 0.920 29 H 0.224 0.776 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.040 0.960 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.245 0.755 43 H 0.159 0.841 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.794 -16.994 -7.206 18.669 hybrid contribution -0.588 0.823 0.629 1.191 sum 2.206 -16.171 -6.577 17.596 Atomic orbital electron populations 1.69618 1.05916 1.28041 1.50870 1.25240 0.95605 0.99629 0.97501 0.85879 0.79209 0.80960 0.78351 1.20463 1.20986 1.19462 1.19677 0.93295 0.82228 1.47427 0.87985 1.41870 1.09132 1.04588 1.64844 1.19677 0.88403 0.84381 0.84196 1.90498 1.13586 1.86907 1.54751 1.22011 0.94254 0.91746 1.01448 1.61465 1.28835 1.01188 1.31117 1.22161 0.95640 1.01020 0.88066 1.21550 0.98293 0.93853 1.01447 1.21589 0.99449 0.97740 0.96963 1.21545 0.98150 0.96220 0.98625 1.21812 0.95624 0.91718 0.93300 0.92204 1.23223 0.89770 1.01434 0.84006 1.86367 1.40322 1.83278 1.15485 1.18091 0.84174 0.76008 0.81180 1.90970 1.14468 1.56967 1.84369 1.43901 1.10153 1.74487 1.05407 1.21504 0.98168 1.04004 0.77086 1.23486 1.03527 0.95598 1.00668 1.23444 1.02757 0.93939 1.02403 0.91951 0.77609 0.89321 0.93437 0.88603 0.96030 0.90789 0.91985 0.92027 0.92595 0.91917 0.90092 0.90808 0.90504 0.75513 0.84147 0.88363 0.87859 0.87557 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.57 -14.68 5.29 -10.96 -0.06 -14.73 16 10 C 0.45 10.76 7.47 -10.98 -0.08 10.68 16 11 O -0.57 -15.53 14.37 5.55 0.08 -15.45 16 12 C 0.04 0.67 5.26 -4.98 -0.03 0.65 16 13 N -0.50 -8.37 4.06 -228.13 -0.93 -9.29 16 14 C 0.06 0.93 5.11 -3.84 -0.02 0.91 16 15 C -0.11 -1.49 6.09 -26.65 -0.16 -1.66 16 16 C -0.12 -1.29 6.00 -26.61 -0.16 -1.45 16 17 C -0.11 -1.24 5.21 -26.66 -0.14 -1.38 16 18 C 0.08 1.11 2.23 -67.72 -0.15 0.96 16 19 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 20 C 0.09 1.25 4.70 37.16 0.17 1.42 16 21 O -0.34 -5.24 9.39 -40.31 -0.38 -5.62 16 22 C 0.65 10.13 8.75 54.06 0.47 10.61 16 23 O -0.58 -10.35 15.70 -19.27 -0.30 -10.65 16 24 N -0.68 -8.49 5.57 -58.73 -0.33 -8.82 16 25 C 0.10 1.04 6.43 -67.93 -0.44 0.60 16 26 C -0.19 -1.51 10.46 -26.73 -0.28 -1.79 16 27 C -0.19 -1.58 10.46 -26.73 -0.28 -1.86 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 30 H 0.09 1.58 5.35 -51.93 -0.28 1.30 16 31 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 32 H 0.10 1.86 6.29 -51.93 -0.33 1.53 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.05 7.58 -51.93 -0.39 0.66 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.13 5.83 -51.93 -0.30 0.83 16 42 H 0.41 4.39 8.94 -40.82 -0.36 4.03 16 43 H 0.14 1.65 7.40 -51.93 -0.38 1.26 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -33.40 382.16 -9.16 -42.56 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -7.37 Total: 14.57 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -1.33 Total: 9.66 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.59 Total: -57.12 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.60 Total: -31.72 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.40 -9.16 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497251889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.841 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds