Wall clock time and date at job start Fri Apr 10 2020 18:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86794 * 119.99886 * 2 1 4 4 H 1.48495 * 109.47546 * 270.00190 * 3 2 1 5 5 H 1.48504 * 109.47288 * 30.00368 * 3 2 1 6 6 H 1.48507 * 109.47149 * 149.99882 * 3 2 1 7 7 C 1.38947 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99923 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00276 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99475 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00231 * 179.97438 * 10 9 7 13 13 N 1.46896 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.46845 * 111.00415 * 71.27727 * 13 12 10 15 15 C 1.53034 * 109.52663 * 185.83607 * 14 13 12 16 16 C 1.53115 * 109.27914 * 300.82364 * 15 14 13 17 17 C 1.53111 * 109.16189 * 57.65548 * 16 15 14 18 18 C 1.46848 * 111.00295 * 195.48866 * 13 12 10 19 19 H 1.08996 * 109.46218 * 294.16933 * 18 13 12 20 20 C 1.53009 * 109.45962 * 54.14266 * 18 13 12 21 21 O 1.45203 * 109.46992 * 63.00039 * 20 18 13 22 22 C 1.34635 * 116.99594 * 180.02562 * 21 20 18 23 23 O 1.21504 * 120.00333 * 359.97438 * 22 21 20 24 24 N 1.34783 * 119.99625 * 180.02562 * 22 21 20 25 25 C 1.46497 * 119.99831 * 179.97438 * 24 22 21 26 26 C 1.52995 * 117.49779 * 223.61824 * 25 24 22 27 27 C 1.53000 * 117.49884 * 154.99425 * 25 24 22 28 28 H 0.97003 * 120.00136 * 359.97438 * 1 2 3 29 29 H 0.97004 * 120.00204 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46917 * 60.00189 * 12 10 9 31 31 H 1.08996 * 109.46734 * 299.99660 * 12 10 9 32 32 H 1.09003 * 109.46200 * 305.85810 * 14 13 12 33 33 H 1.09004 * 109.45843 * 65.82233 * 14 13 12 34 34 H 1.09008 * 109.50298 * 60.76610 * 15 14 13 35 35 H 1.09007 * 109.50230 * 180.83977 * 15 14 13 36 36 H 1.09003 * 109.51764 * 177.55741 * 16 15 14 37 37 H 1.08997 * 109.52036 * 297.67937 * 16 15 14 38 38 H 1.09001 * 109.50348 * 182.40263 * 17 16 15 39 39 H 1.09004 * 109.50833 * 62.28222 * 17 16 15 40 40 H 1.08997 * 109.47011 * 182.99911 * 20 18 13 41 41 H 1.09001 * 109.46956 * 303.00428 * 20 18 13 42 42 H 0.96997 * 119.99850 * 359.97438 * 24 22 21 43 43 H 1.09004 * 115.55267 * 9.32643 * 25 24 22 44 44 H 1.09001 * 117.49972 * 0.02562 * 26 25 24 45 45 H 1.09000 * 117.50037 * 145.02433 * 26 25 24 46 46 H 1.08999 * 117.50294 * 214.97726 * 27 25 24 47 47 H 1.09000 * 117.49709 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5579 -0.0026 11 8 3.2102 -3.5578 -0.0031 12 6 1.2438 -4.8630 -0.0032 13 7 2.1984 -5.9795 -0.0037 14 6 2.8749 -6.0942 1.2946 15 6 3.9611 -7.1690 1.2122 16 6 3.3211 -8.5062 0.8292 17 6 2.5826 -8.3468 -0.5025 18 6 1.5363 -7.2379 -0.3704 19 1 0.8165 -7.5081 0.4022 20 6 0.8092 -7.0613 -1.7051 21 8 1.7764 -6.7706 -2.7483 22 6 1.2964 -6.5857 -3.9925 23 8 0.1020 -6.6657 -4.2010 24 7 2.1408 -6.3131 -5.0070 25 6 1.6186 -6.1125 -6.3609 26 6 2.3704 -6.7800 -7.5142 27 6 2.4540 -5.2644 -7.3220 28 1 -0.4850 0.8401 0.0004 29 1 0.3534 -2.3907 -0.0024 30 1 0.6168 -4.9201 -0.8930 31 1 0.6176 -4.9213 0.8870 32 1 3.3292 -5.1376 1.5531 33 1 2.1487 -6.3696 2.0594 34 1 4.6952 -6.8874 0.4571 35 1 4.4530 -7.2642 2.1803 36 1 4.0968 -9.2652 0.7270 37 1 2.6163 -8.8078 1.6040 38 1 2.0890 -9.2841 -0.7594 39 1 3.2949 -8.0837 -1.2845 40 1 0.2739 -7.9783 -1.9513 41 1 0.1007 -6.2367 -1.6265 42 1 3.0943 -6.2496 -4.8406 43 1 0.5337 -6.0422 -6.4408 44 1 3.2534 -7.3687 -7.2655 45 1 1.7803 -7.1490 -8.3530 46 1 1.9190 -4.6364 -8.0343 47 1 3.3925 -4.8560 -6.9469 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497251889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:09 Heat of formation + Delta-G solvation = -108.180699 kcal Electronic energy + Delta-G solvation = -28637.292038 eV Core-core repulsion = 24627.061899 eV Total energy + Delta-G solvation = -4010.230139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.65796 -40.70436 -39.40568 -38.58702 -37.07817 -35.95962 -34.50002 -34.00829 -33.22441 -32.65290 -29.07814 -27.73019 -26.41127 -24.19211 -24.06772 -23.28023 -22.38133 -22.05033 -21.00312 -20.60632 -19.90334 -19.74837 -18.16676 -17.95183 -17.45958 -16.87918 -16.60547 -16.40538 -16.34792 -15.77379 -15.58704 -15.39272 -15.17226 -14.89590 -14.77565 -14.21957 -13.95373 -13.87761 -13.74806 -13.63646 -13.41601 -13.05355 -12.80653 -12.68958 -12.57197 -12.42115 -12.39600 -12.16062 -12.11708 -11.85529 -11.73787 -11.53431 -11.49770 -11.47399 -11.26040 -11.07032 -10.26911 -9.99827 -9.87941 -9.14688 -8.46064 -5.94947 1.10219 1.37107 1.40041 1.53221 1.65914 2.06043 2.27435 2.67540 2.95658 3.11843 3.20128 3.35412 3.68988 3.74503 3.74868 3.98371 4.01776 4.05075 4.08510 4.26503 4.29556 4.32518 4.36681 4.41452 4.50707 4.55134 4.65229 4.71451 4.76559 4.92394 4.97497 5.00909 5.04868 5.11394 5.20448 5.29496 5.31181 5.36540 5.40384 5.44244 5.55242 5.91220 6.10827 6.25954 6.30539 6.61047 7.13417 7.26012 7.56717 8.12916 8.71655 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007883 B = 0.004245 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3551.252069 B = 6593.977257 C = 9202.537897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.079 0.921 9 N -0.578 5.578 10 C 0.445 3.555 11 O -0.609 6.609 12 C 0.050 3.950 13 N -0.520 5.520 14 C 0.059 3.941 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.104 4.104 18 C 0.086 3.914 19 H 0.085 0.915 20 C 0.086 3.914 21 O -0.351 6.351 22 C 0.644 3.356 23 O -0.609 6.609 24 N -0.673 5.673 25 C 0.062 3.938 26 C -0.169 4.169 27 C -0.179 4.179 28 H 0.277 0.723 29 H 0.393 0.607 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.416 0.584 43 H 0.124 0.876 44 H 0.108 0.892 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 -18.685 -7.203 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.216 5.216 10 C 0.233 3.767 11 O -0.494 6.494 12 C -0.081 4.081 13 N -0.246 5.246 14 C -0.068 4.068 15 C -0.147 4.147 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.022 4.022 19 H 0.103 0.897 20 C 0.011 3.989 21 O -0.264 6.264 22 C 0.398 3.602 23 O -0.501 6.501 24 N -0.331 5.331 25 C -0.042 4.042 26 C -0.207 4.207 27 C -0.217 4.217 28 H 0.086 0.914 29 H 0.226 0.774 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.253 0.747 43 H 0.142 0.858 44 H 0.126 0.874 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.864 -18.502 -7.540 20.183 hybrid contribution -0.583 1.254 0.699 1.550 sum 2.281 -17.247 -6.840 18.694 Atomic orbital electron populations 1.69686 1.06907 1.29207 1.50644 1.26041 0.96515 1.02407 0.96382 0.84931 0.77924 0.76878 0.78620 1.19726 1.19504 1.19625 1.19650 0.92635 0.83952 1.49759 0.90304 1.41954 1.09156 1.04800 1.65665 1.20678 0.88330 0.85709 0.82027 1.90468 1.15451 1.87737 1.55738 1.21819 0.94016 0.89551 1.02729 1.61404 1.29167 1.02251 1.31804 1.22096 0.96627 0.99843 0.88253 1.21520 0.97073 0.94447 1.01689 1.21558 1.00125 0.96384 0.96858 1.21554 0.97479 0.96557 0.98580 1.21975 0.96541 0.90323 0.93319 0.89716 1.23374 0.89582 1.01855 0.84043 1.86375 1.40933 1.83337 1.15731 1.18347 0.84205 0.76082 0.81583 1.90936 1.15730 1.58643 1.84782 1.43987 1.10231 1.73317 1.05529 1.21667 0.97952 1.07617 0.76986 1.23559 1.03012 0.95177 0.98959 1.23531 1.02186 0.94789 1.01240 0.91382 0.77355 0.88553 0.91377 0.93036 0.94243 0.93075 0.90449 0.90095 0.90821 0.89106 0.91974 0.88682 0.91930 0.74680 0.85790 0.87384 0.86204 0.86462 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.34 13.05 21.66 0.28 -51.06 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 43.92 29.55 68.60 2.03 45.94 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.58 -30.96 5.29 -306.99 -1.62 -32.58 16 10 C 0.45 22.15 7.47 87.66 0.65 22.80 16 11 O -0.61 -34.46 14.37 -3.07 -0.04 -34.50 16 12 C 0.05 1.86 5.26 85.56 0.45 2.31 16 13 N -0.52 -17.20 4.06 -875.65 -3.55 -20.76 16 14 C 0.06 1.87 5.11 86.33 0.44 2.31 16 15 C -0.11 -2.75 6.09 30.64 0.19 -2.57 16 16 C -0.11 -2.06 6.00 30.67 0.18 -1.88 16 17 C -0.10 -2.12 5.21 30.64 0.16 -1.96 16 18 C 0.09 2.10 2.23 44.94 0.10 2.20 16 19 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 20 C 0.09 2.28 4.70 71.99 0.34 2.62 16 21 O -0.35 -10.75 9.39 -55.44 -0.52 -11.27 16 22 C 0.64 20.26 8.75 129.79 1.14 21.39 16 23 O -0.61 -22.19 15.70 19.83 0.31 -21.88 16 24 N -0.67 -16.82 5.57 -570.13 -3.18 -19.99 16 25 C 0.06 1.31 6.43 44.99 0.29 1.60 16 26 C -0.17 -2.32 10.46 30.59 0.32 -2.00 16 27 C -0.18 -2.80 10.46 30.59 0.32 -2.49 16 28 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.39 20.27 7.90 -92.70 -0.73 19.54 16 30 H 0.10 3.45 5.35 -2.39 -0.01 3.44 16 31 H 0.07 2.25 8.06 -2.39 -0.02 2.23 16 32 H 0.05 2.08 6.29 -2.39 -0.02 2.06 16 33 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.05 1.50 8.14 -2.38 -0.02 1.49 16 35 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.52 7.58 -2.38 -0.02 1.50 16 40 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.06 1.83 5.83 -2.39 -0.01 1.81 16 42 H 0.42 8.91 8.94 -92.71 -0.83 8.08 16 43 H 0.12 3.01 7.40 -2.39 -0.02 2.99 16 44 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -74.86 382.16 -0.99 -75.86 By element: Atomic # 1 Polarization: 45.24 SS G_CDS: -0.56 Total: 44.68 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: 5.86 Total: 25.56 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -8.07 Total: -124.39 kcal Atomic # 8 Polarization: -67.40 SS G_CDS: -0.25 Total: -67.65 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -74.86 -0.99 -75.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497251889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.324 kcal (2) G-P(sol) polarization free energy of solvation -74.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds