Wall clock time and date at job start Fri Apr 10 2020 18:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86800 * 120.00177 * 2 1 4 4 H 1.48498 * 109.47499 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46978 * 300.00390 * 3 2 1 6 6 H 1.48499 * 109.47187 * 60.00299 * 3 2 1 7 7 C 1.38953 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00180 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00043 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99647 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00124 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47322 * 179.97438 * 12 10 9 14 14 C 1.46849 * 110.98743 * 288.63041 * 13 12 10 15 15 C 1.53038 * 109.51141 * 174.15188 * 14 13 12 16 16 C 1.53120 * 109.28039 * 59.17784 * 15 14 13 17 17 C 1.53118 * 109.16326 * 302.34721 * 16 15 14 18 18 C 1.46841 * 111.00012 * 164.42501 * 13 12 10 19 19 H 1.08991 * 109.46741 * 65.83569 * 18 13 12 20 20 C 1.53000 * 109.46054 * 305.85353 * 18 13 12 21 21 O 1.45202 * 109.47090 * 296.94683 * 20 18 13 22 22 C 1.34641 * 116.99542 * 180.02562 * 21 20 18 23 23 O 1.21513 * 120.00428 * 0.02562 * 22 21 20 24 24 N 1.34778 * 119.99747 * 179.97438 * 22 21 20 25 25 C 1.46505 * 120.00047 * 180.02562 * 24 22 21 26 26 C 1.52994 * 117.49983 * 223.62543 * 25 24 22 27 27 C 1.52999 * 117.49641 * 155.00263 * 25 24 22 28 28 H 0.97003 * 120.00158 * 359.97438 * 1 2 3 29 29 H 0.96994 * 120.00325 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47324 * 59.99381 * 12 10 9 31 31 H 1.08999 * 109.47122 * 299.99879 * 12 10 9 32 32 H 1.08998 * 109.46934 * 54.13938 * 14 13 12 33 33 H 1.08998 * 109.45895 * 294.15563 * 14 13 12 34 34 H 1.09003 * 109.50001 * 299.23799 * 15 14 13 35 35 H 1.08994 * 109.53643 * 179.14322 * 15 14 13 36 36 H 1.09003 * 109.51754 * 182.44151 * 16 15 14 37 37 H 1.08996 * 109.51797 * 62.25817 * 16 15 14 38 38 H 1.09001 * 109.50182 * 297.71657 * 17 16 15 39 39 H 1.08993 * 109.50211 * 177.59683 * 17 16 15 40 40 H 1.09002 * 109.46925 * 176.94808 * 20 18 13 41 41 H 1.08999 * 109.47385 * 56.94910 * 20 18 13 42 42 H 0.97001 * 119.99803 * 359.97438 * 24 22 21 43 43 H 1.08995 * 115.54879 * 9.33255 * 25 24 22 44 44 H 1.09010 * 117.49841 * 359.97438 * 26 25 24 45 45 H 1.08996 * 117.50368 * 145.02224 * 26 25 24 46 46 H 1.09007 * 117.49360 * 214.97972 * 27 25 24 47 47 H 1.09000 * 117.50005 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1983 -5.9796 -0.0016 14 6 2.8730 -6.0941 -1.3009 15 6 3.9595 -7.1688 -1.2196 16 6 3.3202 -8.5061 -0.8356 17 6 2.5831 -8.3466 0.4970 18 6 1.5365 -7.2378 0.3659 19 1 0.8159 -7.5081 -0.4058 20 6 0.8111 -7.0611 1.7014 21 8 1.7797 -6.7716 2.7437 22 6 1.3012 -6.5879 3.9887 23 8 0.1070 -6.6677 4.1986 24 7 2.1469 -6.3164 5.0024 25 6 1.6264 -6.1171 6.3573 26 6 2.1980 -4.9533 7.1695 27 6 2.5745 -6.3928 7.5259 28 1 -0.4850 0.8401 0.0004 29 1 0.3534 -2.3906 0.0002 30 1 0.6173 -4.9204 -0.8913 31 1 0.6167 -4.9209 0.8886 32 1 3.3269 -5.1377 -1.5601 33 1 2.1458 -6.3700 -2.0646 34 1 4.6944 -6.8870 -0.4655 35 1 4.4503 -7.2649 -2.1880 36 1 4.0961 -9.2650 -0.7342 37 1 2.6136 -8.8074 -1.6090 38 1 3.2964 -8.0832 1.2781 39 1 2.0901 -9.2839 0.7546 40 1 0.2752 -7.9777 1.9478 41 1 0.1032 -6.2359 1.6239 42 1 3.1003 -6.2539 4.8350 43 1 0.5727 -6.3585 6.4963 44 1 2.9618 -4.3363 6.6960 45 1 1.5203 -4.4288 7.8431 46 1 2.1444 -6.8154 8.4340 47 1 3.5854 -6.7230 7.2868 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497251893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:13 Heat of formation + Delta-G solvation = -108.240029 kcal Electronic energy + Delta-G solvation = -28658.179820 eV Core-core repulsion = 24647.947108 eV Total energy + Delta-G solvation = -4010.232712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65746 -40.70497 -39.40731 -38.58791 -37.07813 -35.96260 -34.50012 -34.00999 -33.22691 -32.65358 -29.07917 -27.73086 -26.41302 -24.19494 -24.06799 -23.28179 -22.38160 -22.05167 -21.00502 -20.60716 -19.90528 -19.74836 -18.18675 -17.92514 -17.46437 -16.89384 -16.62026 -16.39970 -16.32972 -15.76980 -15.56204 -15.44103 -15.18971 -14.88254 -14.74931 -14.22474 -13.95867 -13.87553 -13.78178 -13.61764 -13.42015 -13.05671 -12.80585 -12.69665 -12.56919 -12.40979 -12.40202 -12.15946 -12.11371 -11.85299 -11.74058 -11.53959 -11.50278 -11.47112 -11.26187 -11.07040 -10.27118 -9.99931 -9.88245 -9.14770 -8.46383 -5.95110 1.10157 1.35469 1.39934 1.54531 1.65726 2.05762 2.27205 2.67504 2.95281 3.11732 3.19839 3.35361 3.69042 3.74718 3.75481 3.98337 4.02143 4.03296 4.08507 4.26594 4.29507 4.32461 4.36637 4.41397 4.50683 4.54999 4.65256 4.71143 4.76398 4.92472 4.97471 5.00895 5.04935 5.11433 5.20063 5.29587 5.31145 5.36534 5.40471 5.44176 5.55289 5.91145 6.10747 6.25955 6.30446 6.60880 7.13382 7.25879 7.56583 8.12772 8.71577 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007773 B = 0.004329 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.428266 B = 6466.057959 C = 9125.416395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.329 4.329 8 H 0.079 0.921 9 N -0.578 5.578 10 C 0.445 3.555 11 O -0.609 6.609 12 C 0.050 3.950 13 N -0.520 5.520 14 C 0.059 3.941 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.104 4.104 18 C 0.086 3.914 19 H 0.085 0.915 20 C 0.086 3.914 21 O -0.351 6.351 22 C 0.644 3.356 23 O -0.609 6.609 24 N -0.673 5.673 25 C 0.065 3.935 26 C -0.194 4.194 27 C -0.157 4.157 28 H 0.277 0.723 29 H 0.393 0.607 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.416 0.584 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.125 0.875 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 -18.653 7.183 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.097 0.903 9 N -0.216 5.216 10 C 0.233 3.767 11 O -0.494 6.494 12 C -0.081 4.081 13 N -0.246 5.246 14 C -0.068 4.068 15 C -0.147 4.147 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.022 4.022 19 H 0.103 0.897 20 C 0.011 3.989 21 O -0.264 6.264 22 C 0.398 3.602 23 O -0.501 6.501 24 N -0.331 5.331 25 C -0.039 4.039 26 C -0.233 4.233 27 C -0.195 4.195 28 H 0.086 0.914 29 H 0.226 0.774 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.253 0.747 43 H 0.146 0.854 44 H 0.113 0.887 45 H 0.132 0.868 46 H 0.143 0.857 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.851 -18.477 7.524 20.153 hybrid contribution -0.591 1.300 -0.718 1.598 sum 2.260 -17.177 6.806 18.614 Atomic orbital electron populations 1.69688 1.06905 1.29141 1.50710 1.26039 0.96512 1.02401 0.96407 0.84875 0.78044 0.77115 0.78326 1.19721 1.19505 1.19684 1.19681 0.92618 0.83942 1.49655 0.90324 1.41955 1.09158 1.04808 1.65672 1.20682 0.88329 0.85712 0.82014 1.90470 1.15455 1.87740 1.55728 1.21821 0.94015 0.89552 1.02735 1.61412 1.29235 1.02252 1.31726 1.22095 0.96640 0.99837 0.88244 1.21519 0.97075 0.94452 1.01688 1.21562 1.00128 0.96383 0.96852 1.21556 0.97480 0.96559 0.98580 1.21974 0.96554 0.90324 0.93311 0.89708 1.23373 0.89551 1.01869 0.84064 1.86377 1.40933 1.83367 1.15701 1.18351 0.84204 0.76066 0.81593 1.90938 1.15731 1.58685 1.84728 1.43996 1.10200 1.73362 1.05525 1.21677 0.98778 1.05606 0.77864 1.23560 1.04297 0.92364 1.03072 1.23530 1.00457 0.97606 0.97906 0.91388 0.77357 0.91366 0.88558 0.93044 0.94229 0.93083 0.90447 0.90086 0.90820 0.91975 0.89097 0.88659 0.91944 0.74680 0.85436 0.88662 0.86789 0.85659 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.33 13.05 21.66 0.28 -51.05 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 3 Si 0.99 43.96 29.55 68.60 2.03 45.98 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.86 16 9 N -0.58 -30.98 5.29 -306.98 -1.62 -32.60 16 10 C 0.45 22.16 7.47 87.66 0.65 22.82 16 11 O -0.61 -34.49 14.38 -3.07 -0.04 -34.54 16 12 C 0.05 1.85 5.26 85.55 0.45 2.30 16 13 N -0.52 -17.20 4.06 -875.66 -3.55 -20.75 16 14 C 0.06 1.87 5.11 86.33 0.44 2.31 16 15 C -0.11 -2.75 6.09 30.65 0.19 -2.57 16 16 C -0.11 -2.06 6.00 30.67 0.18 -1.88 16 17 C -0.10 -2.12 5.21 30.65 0.16 -1.96 16 18 C 0.09 2.10 2.23 44.94 0.10 2.20 16 19 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 20 C 0.09 2.28 4.70 71.98 0.34 2.61 16 21 O -0.35 -10.74 9.39 -55.50 -0.52 -11.27 16 22 C 0.64 20.23 8.75 129.79 1.14 21.37 16 23 O -0.61 -22.14 15.70 19.80 0.31 -21.83 16 24 N -0.67 -16.79 5.57 -570.12 -3.18 -19.97 16 25 C 0.07 1.36 6.43 44.99 0.29 1.65 16 26 C -0.19 -3.36 10.46 30.59 0.32 -3.04 16 27 C -0.16 -2.09 10.45 30.59 0.32 -1.77 16 28 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.39 20.28 7.90 -92.71 -0.73 19.55 16 30 H 0.07 2.25 8.06 -2.39 -0.02 2.23 16 31 H 0.10 3.46 5.35 -2.39 -0.01 3.44 16 32 H 0.05 2.07 6.30 -2.39 -0.02 2.06 16 33 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.52 7.58 -2.39 -0.02 1.50 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.06 1.82 5.83 -2.39 -0.01 1.81 16 42 H 0.42 8.90 8.94 -92.71 -0.83 8.07 16 43 H 0.13 2.99 7.40 -2.39 -0.02 2.97 16 44 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -75.00 382.16 -0.99 -75.99 By element: Atomic # 1 Polarization: 45.29 SS G_CDS: -0.56 Total: 44.73 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: 5.86 Total: 25.31 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -8.07 Total: -124.38 kcal Atomic # 8 Polarization: -67.38 SS G_CDS: -0.25 Total: -67.63 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -75.00 -0.99 -75.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497251893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.245 kcal (2) G-P(sol) polarization free energy of solvation -75.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds