Wall clock time and date at job start Fri Apr 10 2020 18:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99768 * 2 1 4 4 H 1.48496 * 109.47325 * 269.99787 * 3 2 1 5 5 H 1.48498 * 109.47352 * 29.99975 * 3 2 1 6 6 H 1.48501 * 109.47010 * 149.99586 * 3 2 1 7 7 C 1.37873 * 120.00379 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99783 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00186 * 180.02562 * 7 2 1 10 10 C 1.53036 * 109.45710 * 179.97438 * 9 7 2 11 11 C 1.53193 * 109.30965 * 181.37143 * 10 9 7 12 12 N 1.46926 * 108.77634 * 305.36299 * 11 10 9 13 13 C 1.34771 * 120.63455 * 233.58679 * 12 11 10 14 14 O 1.21587 * 120.00015 * 5.22187 * 13 12 11 15 15 N 1.34774 * 120.00354 * 185.22571 * 13 12 11 16 16 C 1.46497 * 120.00200 * 175.01402 * 15 13 12 17 17 C 1.50702 * 109.47200 * 179.97438 * 16 15 13 18 18 O 1.21283 * 119.99938 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00255 * 179.97438 * 17 16 15 20 20 C 1.47157 * 120.98208 * 359.72334 * 19 17 16 21 21 C 1.53721 * 108.16195 * 129.42725 * 20 19 17 22 22 O 1.42956 * 109.14604 * 52.54029 * 21 20 19 23 23 C 1.42962 * 114.16693 * 297.28723 * 22 21 20 24 24 C 1.47156 * 120.98462 * 180.02562 * 19 17 16 25 25 C 1.46923 * 118.73603 * 53.86352 * 12 11 10 26 26 C 1.53037 * 109.44772 * 300.05724 * 9 7 2 27 27 H 0.96999 * 119.99984 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.45568 * 60.02444 * 9 7 2 29 29 H 1.08999 * 109.50010 * 61.42064 * 10 9 7 30 30 H 1.08996 * 109.52845 * 301.33722 * 10 9 7 31 31 H 1.09002 * 109.58813 * 185.57671 * 11 10 9 32 32 H 1.08997 * 109.70579 * 65.22711 * 11 10 9 33 33 H 0.97002 * 119.99474 * 355.01217 * 15 13 12 34 34 H 1.09001 * 109.47268 * 299.99606 * 16 15 13 35 35 H 1.09000 * 109.47131 * 59.99872 * 16 15 13 36 36 H 1.08995 * 109.68606 * 249.20692 * 20 19 17 37 37 H 1.09002 * 109.68071 * 9.76537 * 20 19 17 38 38 H 1.08999 * 109.65460 * 292.57415 * 21 20 19 39 39 H 1.08997 * 109.48032 * 172.39975 * 21 20 19 40 40 H 1.08997 * 109.51599 * 302.65428 * 23 22 21 41 41 H 1.09006 * 109.55847 * 182.53083 * 23 22 21 42 42 H 1.09004 * 109.67998 * 350.23808 * 24 19 17 43 43 H 1.08999 * 109.68064 * 110.79525 * 24 19 17 44 44 H 1.08996 * 109.59222 * 65.92513 * 25 12 11 45 45 H 1.08995 * 109.59032 * 186.35282 * 25 12 11 46 46 H 1.08998 * 109.50014 * 298.57349 * 26 9 7 47 47 H 1.09008 * 109.49752 * 58.67493 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0215 -2.6369 -0.0001 11 6 5.5530 -2.6330 0.0351 12 7 6.0496 -1.8175 -1.0815 13 6 6.9440 -2.3209 -1.9551 14 8 7.2758 -3.4882 -1.8804 15 7 7.4706 -1.5305 -2.9113 16 6 8.5223 -2.0464 -3.7910 17 6 8.9346 -0.9724 -4.7645 18 8 8.4026 0.1169 -4.7268 19 7 9.8951 -1.2220 -5.6763 20 6 10.5599 -2.5335 -5.7367 21 6 10.5124 -3.0282 -7.1913 22 8 11.0357 -2.0118 -8.0496 23 6 10.2827 -0.7965 -8.0442 24 6 10.3148 -0.1891 -6.6366 25 6 5.5574 -0.4405 -1.2243 26 6 4.0216 -0.4703 -1.2483 27 1 -0.4850 0.8400 -0.0004 28 1 3.8743 -0.6810 0.8908 29 1 3.6796 -3.1435 -0.9026 30 1 3.6388 -3.1586 0.8771 31 1 5.9234 -3.6533 -0.0646 32 1 5.8979 -2.2098 0.9785 33 1 7.1531 -0.6200 -3.0170 34 1 9.3830 -2.3445 -3.1923 35 1 8.1456 -2.9092 -4.3404 36 1 11.5960 -2.4352 -5.4131 37 1 10.0383 -3.2395 -5.0904 38 1 9.4817 -3.2459 -7.4711 39 1 11.1145 -3.9317 -7.2878 40 1 9.2512 -1.0060 -8.3272 41 1 10.7192 -0.0936 -8.7539 42 1 9.6309 0.6583 -6.5866 43 1 11.3268 0.1409 -6.4019 44 1 5.9005 0.1594 -0.3814 45 1 5.9306 -0.0137 -2.1551 46 1 3.6798 -0.9969 -2.1393 47 1 3.6390 0.5504 -1.2590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540991417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:26 Heat of formation + Delta-G solvation = -88.019678 kcal Electronic energy + Delta-G solvation = -28343.074920 eV Core-core repulsion = 24333.719029 eV Total energy + Delta-G solvation = -4009.355892 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.95712 -40.04642 -38.76632 -37.19819 -35.32034 -34.57504 -33.51786 -32.10290 -31.46900 -30.54940 -29.09587 -27.45492 -26.10349 -24.58249 -23.01420 -22.69505 -22.39483 -20.34437 -19.94867 -19.24675 -18.08372 -17.40501 -16.94042 -16.70448 -16.52670 -16.29931 -15.97456 -15.59168 -15.48023 -15.13461 -14.79868 -14.40138 -14.10082 -13.97006 -13.62395 -13.43723 -13.07166 -13.04733 -12.94290 -12.55989 -12.44571 -12.30811 -12.08409 -11.96372 -11.82117 -11.29628 -11.02338 -10.75340 -10.72285 -10.33073 -10.26932 -10.16701 -9.83930 -9.72306 -9.31696 -9.23951 -9.12083 -9.07658 -8.56384 -8.11169 -6.09122 -4.08358 2.08183 2.15618 2.86728 3.23227 3.25423 3.32769 3.33538 3.37208 3.90360 4.02148 4.14228 4.37730 4.39468 4.49907 4.58888 4.68474 4.89237 5.00913 5.05061 5.05550 5.16120 5.17328 5.22028 5.34286 5.35849 5.55074 5.65491 5.78938 5.83225 5.87069 5.98800 6.21573 6.30366 6.32386 6.51789 6.60792 6.66065 6.72084 6.74940 6.87402 7.17066 7.22293 7.49786 7.57342 7.73662 8.07924 8.50654 8.71181 8.95445 9.52949 11.04239 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020377 B = 0.002656 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.780560 B =10538.423993 C =11363.582515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.114 4.114 11 C 0.126 3.874 12 N -0.616 5.616 13 C 0.712 3.288 14 O -0.601 6.601 15 N -0.743 5.743 16 C 0.124 3.876 17 C 0.514 3.486 18 O -0.530 6.530 19 N -0.616 5.616 20 C 0.068 3.932 21 C 0.046 3.954 22 O -0.379 6.379 23 C 0.047 3.953 24 C 0.077 3.923 25 C 0.106 3.894 26 C -0.134 4.134 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.408 0.592 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.266 -2.825 -13.492 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.092 0.908 9 C -0.004 4.004 10 C -0.152 4.152 11 C 0.004 3.996 12 N -0.352 5.352 13 C 0.413 3.587 14 O -0.480 6.480 15 N -0.405 5.405 16 C -0.004 4.004 17 C 0.302 3.698 18 O -0.406 6.406 19 N -0.352 5.352 20 C -0.055 4.055 21 C -0.031 4.031 22 O -0.297 6.297 23 C -0.030 4.030 24 C -0.046 4.046 25 C -0.017 4.017 26 C -0.172 4.172 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.248 0.752 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 24.210 -2.987 -13.494 27.877 hybrid contribution -0.049 1.537 -0.035 1.538 sum 24.161 -1.450 -13.529 27.729 Atomic orbital electron populations 1.69900 1.06304 1.26918 1.50802 1.25052 0.94710 0.99069 0.94545 0.86870 0.79998 0.83652 0.77850 1.20549 1.22498 1.18956 1.21053 0.88743 0.94485 1.50738 0.90814 1.19126 0.96784 0.91792 0.92711 1.21839 0.91938 0.99443 1.01972 1.21679 0.95748 0.95409 0.86759 1.47291 1.43894 1.14873 1.29100 1.15665 0.79471 0.84322 0.79212 1.90865 1.66238 1.15215 1.75729 1.44970 1.41823 1.17828 1.35887 1.20814 0.92641 0.95058 0.91927 1.20695 0.78713 0.89198 0.81178 1.90720 1.53929 1.24946 1.71003 1.48050 1.38453 1.14433 1.34234 1.22662 0.99342 0.84533 0.98980 1.23086 1.00311 0.91395 0.88350 1.87981 1.53152 1.23660 1.64952 1.23021 0.96933 0.86912 0.96133 1.22346 1.01879 0.91935 0.88406 1.21919 0.97128 0.82002 1.00677 1.22452 0.91263 1.01083 1.02390 0.92674 0.95358 0.92256 0.91262 0.89674 0.92131 0.75197 0.88605 0.88507 0.89776 0.88102 0.92189 0.87202 0.92360 0.87365 0.87793 0.90359 0.91634 0.91544 0.91593 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 2 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 3 Si 0.89 21.39 24.38 -169.99 -4.14 17.24 16 4 H -0.28 -6.53 6.86 56.52 0.39 -6.14 16 5 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.00 6.53 56.52 0.37 -5.63 16 7 C -0.51 -14.08 9.14 -34.44 -0.31 -14.39 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.01 0.33 1.65 -91.73 -0.15 0.18 16 10 C -0.11 -2.22 5.30 -26.61 -0.14 -2.36 16 11 C 0.13 2.16 6.44 -3.71 -0.02 2.14 16 12 N -0.62 -10.59 2.97 -178.24 -0.53 -11.12 16 13 C 0.71 12.05 8.29 -86.93 -0.72 11.33 16 14 O -0.60 -11.44 15.77 5.29 0.08 -11.35 16 15 N -0.74 -10.43 5.44 -66.42 -0.36 -10.80 16 16 C 0.12 1.33 4.53 -5.19 -0.02 1.30 16 17 C 0.51 5.53 7.78 -10.99 -0.09 5.44 16 18 O -0.53 -7.46 15.14 5.55 0.08 -7.38 16 19 N -0.62 -4.95 3.01 -171.98 -0.52 -5.46 16 20 C 0.07 0.36 6.57 -3.31 -0.02 0.34 16 21 C 0.05 0.24 7.00 37.53 0.26 0.50 16 22 O -0.38 -2.74 10.74 -35.23 -0.38 -3.12 16 23 C 0.05 0.29 6.99 37.33 0.26 0.55 16 24 C 0.08 0.55 6.64 -3.51 -0.02 0.52 16 25 C 0.11 1.79 6.42 -3.49 -0.02 1.77 16 26 C -0.13 -2.77 4.86 -26.39 -0.13 -2.89 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.41 5.78 4.92 -40.82 -0.20 5.58 16 34 H 0.10 0.90 8.00 -51.93 -0.42 0.48 16 35 H 0.10 0.95 7.67 -51.93 -0.40 0.56 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.42 6.05 -51.93 -0.31 0.11 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.85 7.08 -51.93 -0.37 0.48 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.00 5.64 -51.93 -0.29 0.70 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.06 1.25 3.24 -51.92 -0.17 1.08 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -34.65 361.62 -7.92 -42.56 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.15 Total: 4.33 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.23 Total: 6.25 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.63 Total: -53.98 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.21 Total: -21.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.14 Total: 17.24 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.65 -7.92 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540991417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.455 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds