Wall clock time and date at job start Fri Apr 10 2020 18:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99768 * 2 1 4 4 H 1.48496 * 109.47325 * 269.99787 * 3 2 1 5 5 H 1.48498 * 109.47352 * 29.99975 * 3 2 1 6 6 H 1.48501 * 109.47010 * 149.99586 * 3 2 1 7 7 C 1.37873 * 120.00379 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99783 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00186 * 180.02562 * 7 2 1 10 10 C 1.53036 * 109.45710 * 179.97438 * 9 7 2 11 11 C 1.53193 * 109.30965 * 181.37143 * 10 9 7 12 12 N 1.46926 * 108.77634 * 305.36299 * 11 10 9 13 13 C 1.34771 * 120.63455 * 233.58679 * 12 11 10 14 14 O 1.21587 * 120.00015 * 5.22187 * 13 12 11 15 15 N 1.34774 * 120.00354 * 185.22571 * 13 12 11 16 16 C 1.46497 * 120.00200 * 175.01402 * 15 13 12 17 17 C 1.50702 * 109.47200 * 179.97438 * 16 15 13 18 18 O 1.21283 * 119.99938 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00255 * 179.97438 * 17 16 15 20 20 C 1.47157 * 120.98208 * 359.72334 * 19 17 16 21 21 C 1.53721 * 108.16195 * 129.42725 * 20 19 17 22 22 O 1.42956 * 109.14604 * 52.54029 * 21 20 19 23 23 C 1.42962 * 114.16693 * 297.28723 * 22 21 20 24 24 C 1.47156 * 120.98462 * 180.02562 * 19 17 16 25 25 C 1.46923 * 118.73603 * 53.86352 * 12 11 10 26 26 C 1.53037 * 109.44772 * 300.05724 * 9 7 2 27 27 H 0.96999 * 119.99984 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.45568 * 60.02444 * 9 7 2 29 29 H 1.08999 * 109.50010 * 61.42064 * 10 9 7 30 30 H 1.08996 * 109.52845 * 301.33722 * 10 9 7 31 31 H 1.09002 * 109.58813 * 185.57671 * 11 10 9 32 32 H 1.08997 * 109.70579 * 65.22711 * 11 10 9 33 33 H 0.97002 * 119.99474 * 355.01217 * 15 13 12 34 34 H 1.09001 * 109.47268 * 299.99606 * 16 15 13 35 35 H 1.09000 * 109.47131 * 59.99872 * 16 15 13 36 36 H 1.08995 * 109.68606 * 249.20692 * 20 19 17 37 37 H 1.09002 * 109.68071 * 9.76537 * 20 19 17 38 38 H 1.08999 * 109.65460 * 292.57415 * 21 20 19 39 39 H 1.08997 * 109.48032 * 172.39975 * 21 20 19 40 40 H 1.08997 * 109.51599 * 302.65428 * 23 22 21 41 41 H 1.09006 * 109.55847 * 182.53083 * 23 22 21 42 42 H 1.09004 * 109.67998 * 350.23808 * 24 19 17 43 43 H 1.08999 * 109.68064 * 110.79525 * 24 19 17 44 44 H 1.08996 * 109.59222 * 65.92513 * 25 12 11 45 45 H 1.08995 * 109.59032 * 186.35282 * 25 12 11 46 46 H 1.08998 * 109.50014 * 298.57349 * 26 9 7 47 47 H 1.09008 * 109.49752 * 58.67493 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0215 -2.6369 -0.0001 11 6 5.5530 -2.6330 0.0351 12 7 6.0496 -1.8175 -1.0815 13 6 6.9440 -2.3209 -1.9551 14 8 7.2758 -3.4882 -1.8804 15 7 7.4706 -1.5305 -2.9113 16 6 8.5223 -2.0464 -3.7910 17 6 8.9346 -0.9724 -4.7645 18 8 8.4026 0.1169 -4.7268 19 7 9.8951 -1.2220 -5.6763 20 6 10.5599 -2.5335 -5.7367 21 6 10.5124 -3.0282 -7.1913 22 8 11.0357 -2.0118 -8.0496 23 6 10.2827 -0.7965 -8.0442 24 6 10.3148 -0.1891 -6.6366 25 6 5.5574 -0.4405 -1.2243 26 6 4.0216 -0.4703 -1.2483 27 1 -0.4850 0.8400 -0.0004 28 1 3.8743 -0.6810 0.8908 29 1 3.6796 -3.1435 -0.9026 30 1 3.6388 -3.1586 0.8771 31 1 5.9234 -3.6533 -0.0646 32 1 5.8979 -2.2098 0.9785 33 1 7.1531 -0.6200 -3.0170 34 1 9.3830 -2.3445 -3.1923 35 1 8.1456 -2.9092 -4.3404 36 1 11.5960 -2.4352 -5.4131 37 1 10.0383 -3.2395 -5.0904 38 1 9.4817 -3.2459 -7.4711 39 1 11.1145 -3.9317 -7.2878 40 1 9.2512 -1.0060 -8.3272 41 1 10.7192 -0.0936 -8.7539 42 1 9.6309 0.6583 -6.5866 43 1 11.3268 0.1409 -6.4019 44 1 5.9005 0.1594 -0.3814 45 1 5.9306 -0.0137 -2.1551 46 1 3.6798 -0.9969 -2.1393 47 1 3.6390 0.5504 -1.2590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540991417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:25 Heat of formation + Delta-G solvation = -114.117983 kcal Electronic energy + Delta-G solvation = -28344.206628 eV Core-core repulsion = 24333.719029 eV Total energy + Delta-G solvation = -4010.487599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.82578 -41.14642 -39.47089 -38.66836 -35.97382 -35.71468 -35.29436 -33.40503 -32.56240 -31.99098 -29.91617 -28.51256 -27.54530 -25.13281 -24.44190 -24.24538 -23.16263 -21.78376 -20.89370 -20.33897 -19.34082 -18.80844 -18.22103 -17.62717 -17.31933 -17.22042 -16.91259 -16.53484 -16.40601 -16.09082 -15.91013 -15.49938 -15.32898 -15.17149 -14.87588 -14.81254 -14.43509 -14.28530 -14.12825 -13.78025 -13.54612 -13.51013 -13.35952 -12.85701 -12.80620 -12.38479 -12.28796 -12.11671 -11.90348 -11.81652 -11.50230 -11.34893 -11.30959 -11.09060 -11.03656 -11.00871 -10.65520 -10.37613 -9.73972 -9.48520 -8.28180 -6.32631 1.29124 1.31930 1.33659 1.38515 1.48914 1.86519 2.04678 2.34219 2.81985 2.84244 3.06844 3.19373 3.69664 3.92144 3.94776 4.04501 4.08097 4.12071 4.16805 4.20142 4.23809 4.28228 4.30561 4.44471 4.45388 4.54070 4.63041 4.71946 4.73529 4.81956 4.82309 4.90649 4.97080 5.03622 5.07675 5.19218 5.30347 5.37492 5.55965 5.67611 5.73944 5.91830 6.06549 6.08267 6.32476 6.74730 6.78893 6.85326 7.32792 7.43659 8.88848 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020377 B = 0.002656 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.780560 B =10538.423993 C =11363.582515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.303 1.303 6 H -0.234 1.234 7 C -0.519 4.519 8 H 0.028 0.972 9 C 0.014 3.986 10 C -0.107 4.107 11 C 0.135 3.865 12 N -0.621 5.621 13 C 0.711 3.289 14 O -0.623 6.623 15 N -0.737 5.737 16 C 0.122 3.878 17 C 0.515 3.485 18 O -0.570 6.570 19 N -0.611 5.611 20 C 0.064 3.936 21 C 0.043 3.957 22 O -0.394 6.394 23 C 0.051 3.949 24 C 0.075 3.925 25 C 0.114 3.886 26 C -0.131 4.131 27 H 0.264 0.736 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.408 0.592 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.056 0.944 39 H 0.132 0.868 40 H 0.051 0.949 41 H 0.127 0.873 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.801 -2.242 -13.996 31.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.231 1.231 6 H -0.157 1.157 7 C -0.557 4.557 8 H 0.047 0.953 9 C -0.005 4.005 10 C -0.146 4.146 11 C 0.013 3.987 12 N -0.357 5.357 13 C 0.412 3.588 14 O -0.505 6.505 15 N -0.398 5.398 16 C -0.005 4.005 17 C 0.303 3.697 18 O -0.449 6.449 19 N -0.345 5.345 20 C -0.057 4.057 21 C -0.034 4.034 22 O -0.312 6.312 23 C -0.026 4.026 24 C -0.047 4.047 25 C -0.009 4.009 26 C -0.170 4.170 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.248 0.752 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.132 0.868 38 H 0.074 0.926 39 H 0.150 0.850 40 H 0.070 0.930 41 H 0.144 0.856 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.069 0.931 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 27.810 -2.437 -14.037 31.247 hybrid contribution -1.183 1.208 0.065 1.693 sum 26.627 -1.229 -13.971 30.095 Atomic orbital electron populations 1.70070 1.08457 1.27996 1.52917 1.25985 0.95468 1.03365 0.94217 0.85827 0.79640 0.78150 0.78764 1.19176 1.23097 1.15696 1.21394 0.91685 0.92782 1.49799 0.95322 1.19095 0.93336 0.94052 0.93980 1.21722 0.94256 0.97415 1.01164 1.21569 0.93231 0.96056 0.87876 1.47314 1.44153 1.14964 1.29269 1.15732 0.79421 0.84181 0.79420 1.90850 1.67054 1.16214 1.76377 1.44963 1.41984 1.17513 1.35362 1.21020 0.92429 0.95201 0.91881 1.20680 0.78947 0.88545 0.81489 1.90702 1.55576 1.26349 1.72276 1.48153 1.37456 1.15615 1.33270 1.22901 1.00005 0.83358 0.99485 1.23250 1.00614 0.91713 0.87833 1.87966 1.53620 1.24158 1.65489 1.23053 0.96760 0.87041 0.95780 1.22432 1.01981 0.91497 0.88838 1.21863 0.93943 0.82266 1.02808 1.22297 0.94366 0.99903 1.00396 0.92686 0.94650 0.94146 0.91178 0.89403 0.89951 0.75169 0.86811 0.87470 0.88373 0.86801 0.92559 0.85011 0.93016 0.85558 0.89140 0.89261 0.89690 0.89341 0.93119 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 2 C 0.01 0.35 5.45 84.65 0.46 0.81 16 3 Si 0.95 43.58 24.38 68.60 1.67 45.25 16 4 H -0.27 -11.58 6.86 99.48 0.68 -10.90 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.23 -9.49 6.53 99.48 0.65 -8.84 16 7 C -0.52 -29.28 9.14 25.60 0.23 -29.05 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 9 C 0.01 0.63 1.65 -11.51 -0.02 0.61 16 10 C -0.11 -4.15 5.30 30.67 0.16 -3.98 16 11 C 0.14 4.33 6.44 86.36 0.56 4.88 16 12 N -0.62 -19.74 2.97 -836.09 -2.48 -22.22 16 13 C 0.71 22.32 8.29 179.06 1.49 23.81 16 14 O -0.62 -22.35 15.77 -3.99 -0.06 -22.41 16 15 N -0.74 -18.90 5.44 -482.31 -2.62 -21.53 16 16 C 0.12 2.31 4.53 85.63 0.39 2.70 16 17 C 0.51 10.14 7.78 87.66 0.68 10.82 16 18 O -0.57 -15.37 15.14 -3.04 -0.05 -15.41 16 19 N -0.61 -8.57 3.01 -816.42 -2.46 -11.03 16 20 C 0.06 0.50 6.57 86.50 0.57 1.07 16 21 C 0.04 0.34 7.00 72.22 0.51 0.85 16 22 O -0.39 -4.86 10.74 -148.98 -1.60 -6.46 16 23 C 0.05 0.53 6.99 72.10 0.50 1.04 16 24 C 0.07 0.95 6.64 86.37 0.57 1.52 16 25 C 0.11 3.50 6.42 86.51 0.56 4.05 16 26 C -0.13 -5.20 4.86 30.82 0.15 -5.05 16 27 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.04 1.53 7.20 -2.39 -0.02 1.52 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.09 2.81 7.00 -2.39 -0.02 2.79 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.41 10.55 4.92 -92.71 -0.46 10.10 16 34 H 0.11 1.78 8.00 -2.39 -0.02 1.76 16 35 H 0.11 1.84 7.67 -2.39 -0.02 1.82 16 36 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.11 0.60 6.05 -2.39 -0.01 0.58 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.09 1.42 7.08 -2.38 -0.02 1.40 16 43 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 45 H 0.09 2.36 5.64 -2.39 -0.01 2.34 16 46 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.05 2.08 3.24 -2.38 -0.01 2.07 16 Total: -1.00 -76.74 361.62 -0.04 -76.79 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.45 Total: 22.63 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 6.81 Total: 14.07 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -7.26 Total: -114.46 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.71 Total: -44.28 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.67 Total: 45.25 kcal Total: -76.74 -0.04 -76.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540991417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.331 kcal (2) G-P(sol) polarization free energy of solvation -76.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds