Wall clock time and date at job start Fri Apr 10 2020 18:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99970 * 2 1 4 4 H 1.48502 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47245 * 60.00200 * 3 2 1 6 6 H 1.48491 * 109.47321 * 299.99917 * 3 2 1 7 7 C 1.37881 * 120.00557 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00488 * 175.03193 * 7 2 1 9 9 C 1.50706 * 119.99366 * 355.03330 * 7 2 1 10 10 C 1.53037 * 109.46141 * 275.07271 * 9 7 2 11 11 C 1.53195 * 109.30955 * 178.60513 * 10 9 7 12 12 N 1.46924 * 108.76884 * 54.65306 * 11 10 9 13 13 C 1.34780 * 120.63168 * 126.36209 * 12 11 10 14 14 O 1.21586 * 119.99542 * 354.77926 * 13 12 11 15 15 N 1.34773 * 120.00042 * 174.78155 * 13 12 11 16 16 C 1.46497 * 120.00064 * 184.98005 * 15 13 12 17 17 C 1.52999 * 109.47356 * 180.02562 * 16 15 13 18 18 H 1.08997 * 109.86554 * 59.30296 * 17 16 15 19 19 C 1.54104 * 109.87777 * 180.30485 * 17 16 15 20 20 C 1.54817 * 104.18359 * 121.45619 * 19 17 16 21 21 C 1.54999 * 102.09343 * 20.87911 * 20 19 17 22 22 H 1.08996 * 110.61413 * 81.63213 * 21 20 19 23 23 C 1.50702 * 110.61804 * 204.47800 * 21 20 19 24 24 N 1.34776 * 119.99756 * 295.00012 * 23 21 20 25 25 O 1.21272 * 120.00037 * 114.99997 * 23 21 20 26 26 O 1.43736 * 109.87856 * 298.29407 * 17 16 15 27 27 C 1.46925 * 118.73741 * 306.38691 * 12 11 10 28 28 C 1.53046 * 109.45760 * 155.01548 * 9 7 2 29 29 H 0.97003 * 119.99725 * 185.04337 * 1 2 3 30 30 H 1.09003 * 109.46109 * 35.04940 * 9 7 2 31 31 H 1.08994 * 109.49637 * 298.56428 * 10 9 7 32 32 H 1.08996 * 109.49770 * 58.66608 * 10 9 7 33 33 H 1.09005 * 109.59444 * 294.86109 * 11 10 9 34 34 H 1.09002 * 109.70364 * 174.50671 * 11 10 9 35 35 H 0.96999 * 119.99976 * 4.98148 * 15 13 12 36 36 H 1.09004 * 109.47055 * 300.00750 * 16 15 13 37 37 H 1.09002 * 109.46732 * 59.99926 * 16 15 13 38 38 H 1.08997 * 110.48502 * 240.12776 * 19 17 16 39 39 H 1.08999 * 110.48878 * 2.64799 * 19 17 16 40 40 H 1.08991 * 110.90706 * 139.08069 * 20 19 17 41 41 H 1.09007 * 110.90386 * 262.64785 * 20 19 17 42 42 H 0.97003 * 119.99906 * 359.97438 * 24 23 21 43 43 H 0.97000 * 120.00357 * 180.02562 * 24 23 21 44 44 H 1.09005 * 109.58332 * 293.81826 * 27 12 11 45 45 H 1.09005 * 109.70290 * 173.46539 * 27 12 11 46 46 H 1.08999 * 109.49653 * 301.33923 * 28 9 7 47 47 H 1.08997 * 109.49641 * 61.43265 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 1.2126 6 1 1.8904 2.3964 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0815 9 6 1.2553 -2.4968 0.1119 10 6 0.9993 -2.8120 1.5874 11 6 0.2073 -4.1188 1.6962 12 7 0.9311 -5.1720 0.9711 13 6 1.2442 -6.3334 1.5791 14 8 1.0128 -6.4811 2.7635 15 7 1.8139 -7.3308 0.8741 16 6 2.0545 -8.6302 1.5066 17 6 2.7062 -9.5764 0.4962 18 1 3.6488 -9.1543 0.1481 19 6 2.9565 -10.9493 1.1499 20 6 2.1687 -11.9421 0.2608 21 6 2.0207 -11.1469 -1.0614 22 1 2.9271 -11.2278 -1.6614 23 6 0.8252 -11.6310 -1.8409 24 7 0.8033 -12.8865 -2.3304 25 8 -0.1172 -10.8908 -2.0276 26 8 1.8228 -9.7850 -0.6183 27 6 1.3074 -4.9348 -0.4292 28 6 2.0868 -3.6188 -0.5142 29 1 -0.4850 -0.8368 0.0739 30 1 0.3032 -2.4145 -0.4124 31 1 1.9514 -2.9191 2.1070 32 1 0.4272 -2.0014 2.0386 33 1 -0.7809 -3.9851 1.2560 34 1 0.1053 -4.4006 2.7442 35 1 2.0648 -7.1883 -0.0520 36 1 2.7170 -8.5006 2.3624 37 1 1.1069 -9.0522 1.8414 38 1 4.0198 -11.1886 1.1393 39 1 2.5737 -10.9614 2.1704 40 1 2.7376 -12.8580 0.1022 41 1 1.1930 -12.1624 0.6941 42 1 1.5572 -13.4784 -2.1814 43 1 0.0340 -13.1980 -2.8324 44 1 0.4089 -4.8676 -1.0427 45 1 1.9327 -5.7535 -0.7854 46 1 2.2888 -3.3824 -1.5589 47 1 3.0286 -3.7182 0.0254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541920006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:30 Heat of formation + Delta-G solvation = -118.901573 kcal Electronic energy + Delta-G solvation = -28149.702453 eV Core-core repulsion = 24139.007422 eV Total energy + Delta-G solvation = -4010.695031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76343 -39.90530 -38.79343 -37.02975 -34.69026 -34.23612 -33.66336 -32.59839 -31.20966 -30.63165 -29.86713 -26.61118 -25.42000 -23.45121 -22.77517 -22.25944 -21.59248 -21.00667 -20.30173 -19.00434 -18.21493 -17.88356 -17.41750 -16.87375 -16.53959 -16.09135 -15.92801 -15.15021 -15.00336 -14.88702 -14.19283 -13.96467 -13.78153 -13.73382 -13.66317 -13.36460 -13.07640 -12.75690 -12.54799 -12.43941 -12.26799 -12.08743 -11.85777 -11.64905 -11.31581 -11.15983 -10.76497 -10.69880 -10.42979 -10.41389 -10.17246 -10.11109 -10.03733 -9.78719 -9.62776 -9.20683 -8.95067 -8.57828 -8.27672 -7.87082 -6.31273 -4.02276 2.16031 2.61757 2.98207 3.45790 3.49286 3.52807 3.58187 3.62672 3.90260 4.14005 4.22212 4.31020 4.47403 4.55209 4.55407 4.69814 4.93081 5.01162 5.14892 5.33607 5.36183 5.42143 5.44000 5.50490 5.71337 5.77869 5.83791 6.00656 6.08430 6.21244 6.28820 6.36859 6.42936 6.48434 6.66638 6.74873 6.82439 6.89664 6.98090 7.03590 7.40884 7.49882 7.65786 7.80952 8.27266 8.30373 8.48392 8.92544 8.94403 9.69645 11.07338 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022690 B = 0.002380 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.728068 B =11762.109684 C =12218.461504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.019 3.981 3 Si 1.071 2.929 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.592 4.592 8 H 0.048 0.952 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.126 3.874 12 N -0.617 5.617 13 C 0.707 3.293 14 O -0.604 6.604 15 N -0.747 5.747 16 C 0.144 3.856 17 C 0.061 3.939 18 H 0.082 0.918 19 C -0.146 4.146 20 C -0.143 4.143 21 C 0.056 3.944 22 H 0.099 0.901 23 C 0.520 3.480 24 N -0.854 5.854 25 O -0.514 6.514 26 O -0.337 6.337 27 C 0.112 3.888 28 C -0.116 4.116 29 H 0.271 0.729 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.399 0.601 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.401 0.599 43 H 0.406 0.594 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.603 -29.548 -2.584 30.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.185 4.185 3 Si 0.900 3.100 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.630 4.630 8 H 0.066 0.934 9 C 0.011 3.989 10 C -0.159 4.159 11 C 0.003 3.997 12 N -0.354 5.354 13 C 0.409 3.591 14 O -0.483 6.483 15 N -0.405 5.405 16 C 0.019 3.981 17 C 0.003 3.997 18 H 0.100 0.900 19 C -0.184 4.184 20 C -0.181 4.181 21 C -0.005 4.005 22 H 0.117 0.883 23 C 0.303 3.697 24 N -0.420 5.420 25 O -0.388 6.388 26 O -0.255 6.255 27 C -0.012 4.012 28 C -0.154 4.154 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.236 0.764 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.229 0.771 43 H 0.237 0.763 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.540 -27.186 -1.889 28.026 hybrid contribution 0.622 -2.200 -0.526 2.346 sum 7.161 -29.387 -2.415 30.343 Atomic orbital electron populations 1.70738 1.06811 1.31061 1.46442 1.25787 0.96550 1.02533 0.93607 0.83521 0.74492 0.75083 0.76914 1.21639 1.21419 1.21431 1.21973 0.94491 0.91579 1.54989 0.93404 1.18838 0.96005 0.93214 0.90822 1.22124 0.98790 0.93759 1.01256 1.21689 0.94216 0.87150 0.96632 1.47308 1.59834 1.15110 1.13121 1.15807 0.78354 0.80237 0.84711 1.90852 1.61608 1.82014 1.13864 1.45113 1.67657 1.11817 1.15938 1.21326 1.00969 0.81701 0.94064 1.23146 0.93589 0.95822 0.87168 0.90045 1.22917 1.01611 0.92947 1.00908 1.23109 1.02280 0.98741 0.93954 1.23011 0.96409 0.84787 0.96295 0.88345 1.20225 0.88253 0.81993 0.79185 1.43736 1.24473 1.14414 1.59382 1.90831 1.36542 1.54703 1.56689 1.89146 1.62546 1.26218 1.47624 1.21758 0.99179 0.98549 0.81678 1.21929 0.98712 0.93719 1.01069 0.91755 0.94922 0.93248 0.91713 0.92507 0.90228 0.76391 0.90324 0.91199 0.89564 0.89209 0.89148 0.89699 0.77104 0.76276 0.91854 0.91986 0.91819 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.36 13.63 55.43 0.76 -26.60 16 2 C 0.02 0.55 5.45 -17.82 -0.10 0.45 16 3 Si 1.07 25.36 29.91 -169.99 -5.08 20.28 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.59 -16.37 8.31 -34.44 -0.29 -16.66 16 8 H 0.05 1.34 7.81 -52.49 -0.41 0.92 16 9 C 0.03 0.73 1.80 -91.73 -0.16 0.57 16 10 C -0.12 -2.77 5.34 -26.61 -0.14 -2.91 16 11 C 0.13 2.58 6.44 -3.71 -0.02 2.56 16 12 N -0.62 -11.88 2.97 -178.50 -0.53 -12.42 16 13 C 0.71 13.49 8.29 -86.92 -0.72 12.77 16 14 O -0.60 -13.29 15.77 5.29 0.08 -13.21 16 15 N -0.75 -11.14 5.38 -65.23 -0.35 -11.49 16 16 C 0.14 1.72 5.15 -4.04 -0.02 1.70 16 17 C 0.06 0.52 3.49 -26.15 -0.09 0.43 16 18 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 19 C -0.15 -0.75 6.64 -25.20 -0.17 -0.92 16 20 C -0.14 -0.65 6.57 -24.72 -0.16 -0.81 16 21 C 0.06 0.40 3.76 -26.83 -0.10 0.30 16 22 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 23 C 0.52 4.70 7.48 -10.99 -0.08 4.62 16 24 N -0.85 -3.44 8.86 31.22 0.28 -3.16 16 25 O -0.51 -7.74 17.40 -13.47 -0.23 -7.98 16 26 O -0.34 -3.75 10.33 -54.26 -0.56 -4.31 16 27 C 0.11 1.96 6.38 -3.72 -0.02 1.93 16 28 C -0.12 -2.37 5.34 -26.61 -0.14 -2.51 16 29 H 0.27 8.04 6.65 -40.82 -0.27 7.76 16 30 H 0.03 0.86 6.66 -51.93 -0.35 0.51 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.66 6.99 -51.93 -0.36 1.29 16 35 H 0.40 5.44 5.90 -40.82 -0.24 5.20 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.09 0.46 7.70 -51.93 -0.40 0.06 16 40 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.08 0.48 8.05 -51.92 -0.42 0.06 16 42 H 0.40 0.17 8.83 -40.82 -0.36 -0.19 16 43 H 0.41 1.43 8.93 -40.82 -0.36 1.06 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 0.91 5.66 -51.93 -0.29 0.61 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -38.15 376.90 -9.53 -47.68 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.34 Total: 4.02 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.23 Total: 1.51 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.15 Total: -53.67 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.71 Total: -25.50 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.15 -9.53 -47.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541920006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.225 kcal (2) G-P(sol) polarization free energy of solvation -38.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds