Wall clock time and date at job start Fri Apr 10 2020 18:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99970 * 2 1 4 4 H 1.48502 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47245 * 60.00200 * 3 2 1 6 6 H 1.48491 * 109.47321 * 299.99917 * 3 2 1 7 7 C 1.37881 * 120.00557 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00488 * 175.03193 * 7 2 1 9 9 C 1.50706 * 119.99366 * 355.03330 * 7 2 1 10 10 C 1.53037 * 109.46141 * 275.07271 * 9 7 2 11 11 C 1.53195 * 109.30955 * 178.60513 * 10 9 7 12 12 N 1.46924 * 108.76884 * 54.65306 * 11 10 9 13 13 C 1.34780 * 120.63168 * 126.36209 * 12 11 10 14 14 O 1.21586 * 119.99542 * 354.77926 * 13 12 11 15 15 N 1.34773 * 120.00042 * 174.78155 * 13 12 11 16 16 C 1.46497 * 120.00064 * 184.98005 * 15 13 12 17 17 C 1.52999 * 109.47356 * 180.02562 * 16 15 13 18 18 H 1.08997 * 109.86554 * 59.30296 * 17 16 15 19 19 C 1.54104 * 109.87777 * 180.30485 * 17 16 15 20 20 C 1.54817 * 104.18359 * 121.45619 * 19 17 16 21 21 C 1.54999 * 102.09343 * 20.87911 * 20 19 17 22 22 H 1.08996 * 110.61413 * 81.63213 * 21 20 19 23 23 C 1.50702 * 110.61804 * 204.47800 * 21 20 19 24 24 N 1.34776 * 119.99756 * 295.00012 * 23 21 20 25 25 O 1.21272 * 120.00037 * 114.99997 * 23 21 20 26 26 O 1.43736 * 109.87856 * 298.29407 * 17 16 15 27 27 C 1.46925 * 118.73741 * 306.38691 * 12 11 10 28 28 C 1.53046 * 109.45760 * 155.01548 * 9 7 2 29 29 H 0.97003 * 119.99725 * 185.04337 * 1 2 3 30 30 H 1.09003 * 109.46109 * 35.04940 * 9 7 2 31 31 H 1.08994 * 109.49637 * 298.56428 * 10 9 7 32 32 H 1.08996 * 109.49770 * 58.66608 * 10 9 7 33 33 H 1.09005 * 109.59444 * 294.86109 * 11 10 9 34 34 H 1.09002 * 109.70364 * 174.50671 * 11 10 9 35 35 H 0.96999 * 119.99976 * 4.98148 * 15 13 12 36 36 H 1.09004 * 109.47055 * 300.00750 * 16 15 13 37 37 H 1.09002 * 109.46732 * 59.99926 * 16 15 13 38 38 H 1.08997 * 110.48502 * 240.12776 * 19 17 16 39 39 H 1.08999 * 110.48878 * 2.64799 * 19 17 16 40 40 H 1.08991 * 110.90706 * 139.08069 * 20 19 17 41 41 H 1.09007 * 110.90386 * 262.64785 * 20 19 17 42 42 H 0.97003 * 119.99906 * 359.97438 * 24 23 21 43 43 H 0.97000 * 120.00357 * 180.02562 * 24 23 21 44 44 H 1.09005 * 109.58332 * 293.81826 * 27 12 11 45 45 H 1.09005 * 109.70290 * 173.46539 * 27 12 11 46 46 H 1.08999 * 109.49653 * 301.33923 * 28 9 7 47 47 H 1.08997 * 109.49641 * 61.43265 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 1.2126 6 1 1.8904 2.3964 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0816 -1.1957 -0.0815 9 6 1.2553 -2.4968 0.1119 10 6 0.9993 -2.8120 1.5874 11 6 0.2073 -4.1188 1.6962 12 7 0.9311 -5.1720 0.9711 13 6 1.2442 -6.3334 1.5791 14 8 1.0128 -6.4811 2.7635 15 7 1.8139 -7.3308 0.8741 16 6 2.0545 -8.6302 1.5066 17 6 2.7062 -9.5764 0.4962 18 1 3.6488 -9.1543 0.1481 19 6 2.9565 -10.9493 1.1499 20 6 2.1687 -11.9421 0.2608 21 6 2.0207 -11.1469 -1.0614 22 1 2.9271 -11.2278 -1.6614 23 6 0.8252 -11.6310 -1.8409 24 7 0.8033 -12.8865 -2.3304 25 8 -0.1172 -10.8908 -2.0276 26 8 1.8228 -9.7850 -0.6183 27 6 1.3074 -4.9348 -0.4292 28 6 2.0868 -3.6188 -0.5142 29 1 -0.4850 -0.8368 0.0739 30 1 0.3032 -2.4145 -0.4124 31 1 1.9514 -2.9191 2.1070 32 1 0.4272 -2.0014 2.0386 33 1 -0.7809 -3.9851 1.2560 34 1 0.1053 -4.4006 2.7442 35 1 2.0648 -7.1883 -0.0520 36 1 2.7170 -8.5006 2.3624 37 1 1.1069 -9.0522 1.8414 38 1 4.0198 -11.1886 1.1393 39 1 2.5737 -10.9614 2.1704 40 1 2.7376 -12.8580 0.1022 41 1 1.1930 -12.1624 0.6941 42 1 1.5572 -13.4784 -2.1814 43 1 0.0340 -13.1980 -2.8324 44 1 0.4089 -4.8676 -1.0427 45 1 1.9327 -5.7535 -0.7854 46 1 2.2888 -3.3824 -1.5589 47 1 3.0286 -3.7182 0.0254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541920006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:29 Heat of formation + Delta-G solvation = -148.571304 kcal Electronic energy + Delta-G solvation = -28150.989029 eV Core-core repulsion = 24139.007422 eV Total energy + Delta-G solvation = -4011.981607 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61487 -41.15699 -39.55248 -38.68202 -35.94014 -35.56042 -34.84850 -33.20494 -32.84232 -32.11939 -31.00784 -27.88646 -26.87510 -24.80567 -24.21412 -23.62507 -22.27350 -21.94991 -21.56121 -20.51474 -19.48929 -18.69188 -18.49582 -18.08753 -17.57635 -17.20617 -16.87108 -16.29269 -16.00929 -15.68455 -15.65460 -15.57713 -15.34140 -15.14339 -14.72476 -14.56664 -14.46838 -14.14419 -13.83063 -13.67403 -13.39440 -13.02217 -12.92341 -12.65691 -12.63632 -12.59791 -12.40935 -12.16267 -11.93741 -11.72266 -11.51473 -11.39562 -11.11481 -11.05824 -10.74472 -10.66534 -10.59505 -10.43348 -10.25589 -9.47947 -8.56468 -6.28179 1.52807 1.53478 1.60545 1.62122 1.77953 2.04956 2.13751 2.58286 2.81308 3.06595 3.22035 3.44963 3.67611 3.87596 3.90969 3.97658 4.09153 4.11152 4.14895 4.18697 4.26464 4.39082 4.44243 4.51043 4.54854 4.60804 4.74227 4.76772 4.85775 4.90394 4.99253 5.03098 5.03528 5.13353 5.15479 5.35641 5.42503 5.57287 5.72316 5.73978 5.90038 5.94161 6.13806 6.26663 6.44294 6.69670 6.89204 7.31418 7.46895 7.51359 8.82206 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022690 B = 0.002380 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.728068 B =11762.109684 C =12218.461504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.032 4.032 3 Si 1.115 2.885 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.602 4.602 8 H 0.043 0.957 9 C 0.024 3.976 10 C -0.107 4.107 11 C 0.136 3.864 12 N -0.623 5.623 13 C 0.702 3.298 14 O -0.637 6.637 15 N -0.732 5.732 16 C 0.138 3.862 17 C 0.064 3.936 18 H 0.099 0.901 19 C -0.140 4.140 20 C -0.134 4.134 21 C 0.051 3.949 22 H 0.133 0.867 23 C 0.514 3.486 24 N -0.827 5.827 25 O -0.589 6.589 26 O -0.378 6.378 27 C 0.118 3.882 28 C -0.107 4.107 29 H 0.260 0.740 30 H 0.009 0.991 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.407 0.593 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.067 0.933 42 H 0.422 0.578 43 H 0.410 0.590 44 H 0.067 0.933 45 H 0.098 0.902 46 H 0.069 0.931 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.221 -32.151 -3.308 33.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.230 4.230 3 Si 0.938 3.062 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.640 4.640 8 H 0.061 0.939 9 C 0.005 3.995 10 C -0.146 4.146 11 C 0.012 3.988 12 N -0.359 5.359 13 C 0.404 3.596 14 O -0.520 6.520 15 N -0.390 5.390 16 C 0.014 3.986 17 C 0.006 3.994 18 H 0.117 0.883 19 C -0.178 4.178 20 C -0.172 4.172 21 C -0.009 4.009 22 H 0.150 0.850 23 C 0.299 3.701 24 N -0.393 5.393 25 O -0.468 6.468 26 O -0.297 6.297 27 C -0.004 4.004 28 C -0.145 4.145 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.245 0.755 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.136 0.864 39 H 0.105 0.895 40 H 0.151 0.849 41 H 0.086 0.914 42 H 0.254 0.746 43 H 0.242 0.758 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.088 0.912 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.219 -29.906 -2.648 31.407 hybrid contribution -0.176 -1.511 -0.316 1.554 sum 9.043 -31.417 -2.965 32.827 Atomic orbital electron populations 1.70855 1.07755 1.30490 1.48673 1.27146 0.96637 1.06203 0.92974 0.82949 0.74283 0.71699 0.77267 1.19818 1.20954 1.20580 1.22334 0.94451 0.93139 1.54063 0.93897 1.18845 0.95258 0.93814 0.91572 1.21880 0.98232 0.94425 1.00022 1.21420 0.94089 0.86387 0.96856 1.47300 1.59890 1.15048 1.13625 1.16007 0.78461 0.80678 0.84504 1.90823 1.63041 1.82631 1.15455 1.45112 1.66042 1.11833 1.16029 1.21583 1.00557 0.80835 0.95599 1.23217 0.93073 0.96851 0.86216 0.88284 1.22963 1.03611 0.90805 1.00433 1.23146 1.02105 0.99911 0.92023 1.23333 0.96414 0.83530 0.97645 0.84982 1.20766 0.87988 0.82580 0.78803 1.43553 1.25215 1.13108 1.57453 1.90798 1.39228 1.56956 1.59839 1.89107 1.63604 1.28625 1.48410 1.21769 0.99588 0.98198 0.80877 1.21774 0.98137 0.93741 1.00877 0.92961 0.97238 0.94124 0.94132 0.92184 0.90562 0.75498 0.89745 0.93131 0.86403 0.89476 0.84894 0.91383 0.74588 0.75828 0.91482 0.88366 0.91211 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.57 13.63 21.45 0.29 -57.27 16 2 C -0.03 -1.81 5.45 84.66 0.46 -1.35 16 3 Si 1.11 51.02 29.91 68.60 2.05 53.07 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.60 -33.66 8.31 25.60 0.21 -33.45 16 8 H 0.04 2.39 7.81 -2.91 -0.02 2.37 16 9 C 0.02 1.19 1.80 -11.51 -0.02 1.17 16 10 C -0.11 -5.05 5.34 30.67 0.16 -4.89 16 11 C 0.14 5.70 6.44 86.36 0.56 6.25 16 12 N -0.62 -23.78 2.97 -836.90 -2.49 -26.27 16 13 C 0.70 26.51 8.29 179.05 1.49 28.00 16 14 O -0.64 -28.25 15.77 -3.99 -0.06 -28.31 16 15 N -0.73 -21.04 5.38 -478.54 -2.58 -23.61 16 16 C 0.14 3.15 5.15 86.38 0.45 3.59 16 17 C 0.06 0.94 3.49 30.97 0.11 1.05 16 18 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 19 C -0.14 -0.95 6.64 31.59 0.21 -0.74 16 20 C -0.13 -0.75 6.57 31.90 0.21 -0.54 16 21 C 0.05 0.59 3.76 30.53 0.11 0.71 16 22 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 23 C 0.51 8.69 7.48 87.66 0.66 9.34 16 24 N -0.83 -4.82 8.86 -173.54 -1.54 -6.36 16 25 O -0.59 -18.18 17.40 15.19 0.26 -17.91 16 26 O -0.38 -7.85 10.33 -130.78 -1.35 -9.20 16 27 C 0.12 4.00 6.38 86.36 0.55 4.55 16 28 C -0.11 -4.30 5.34 30.67 0.16 -4.14 16 29 H 0.26 16.01 6.65 -92.71 -0.62 15.40 16 30 H 0.01 0.51 6.66 -2.39 -0.02 0.50 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.08 3.25 6.99 -2.39 -0.02 3.24 16 35 H 0.41 10.32 5.90 -92.71 -0.55 9.77 16 36 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.09 0.67 7.70 -2.39 -0.02 0.65 16 40 H 0.13 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.07 0.63 8.05 -2.38 -0.02 0.61 16 42 H 0.42 -1.17 8.83 -92.71 -0.82 -1.98 16 43 H 0.41 2.21 8.93 -92.71 -0.83 1.39 16 44 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 45 H 0.10 2.63 5.66 -2.38 -0.01 2.61 16 46 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 47 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -87.36 376.90 -1.12 -88.47 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -1.03 Total: 17.82 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 5.32 Total: 9.57 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -6.31 Total: -113.52 kcal Atomic # 8 Polarization: -54.27 SS G_CDS: -1.15 Total: -55.42 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Total: -87.36 -1.12 -88.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541920006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.098 kcal (2) G-P(sol) polarization free energy of solvation -87.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds