Wall clock time and date at job start Fri Apr 10 2020 18:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99725 * 2 1 4 4 H 1.48500 * 109.47147 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47387 * 120.00047 * 3 2 1 6 6 H 1.48502 * 109.46945 * 240.00033 * 3 2 1 7 7 C 1.37879 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99536 * 0.02562 * 7 2 1 10 10 C 1.53035 * 109.46124 * 300.05944 * 9 7 2 11 11 C 1.53196 * 109.31237 * 178.61645 * 10 9 7 12 12 N 1.46926 * 108.77292 * 54.64038 * 11 10 9 13 13 C 1.34778 * 120.62871 * 126.36669 * 12 11 10 14 14 O 1.21581 * 120.00294 * 354.79434 * 13 12 11 15 15 N 1.34774 * 119.99738 * 174.79216 * 13 12 11 16 16 C 1.46499 * 120.00142 * 184.98512 * 15 13 12 17 17 C 1.52995 * 109.47475 * 180.02562 * 16 15 13 18 18 H 1.08999 * 110.27318 * 60.63771 * 17 16 15 19 19 C 1.54945 * 110.31002 * 182.83099 * 17 16 15 20 20 C 1.55311 * 100.93993 * 155.35977 * 19 17 16 21 21 C 1.54383 * 102.25283 * 325.86592 * 20 19 17 22 22 H 1.08999 * 109.83019 * 261.84150 * 21 20 19 23 23 C 1.50706 * 109.90418 * 140.91122 * 21 20 19 24 24 N 1.34781 * 119.99720 * 65.36864 * 23 21 20 25 25 O 1.21278 * 120.00041 * 245.36990 * 23 21 20 26 26 O 1.43231 * 107.58789 * 21.35905 * 21 20 19 27 27 C 1.46920 * 118.73969 * 306.39044 * 12 11 10 28 28 C 1.53042 * 109.45624 * 179.97438 * 9 7 2 29 29 H 0.96997 * 120.00281 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46084 * 60.02721 * 9 7 2 31 31 H 1.08996 * 109.50422 * 298.57304 * 10 9 7 32 32 H 1.09008 * 109.49697 * 58.66950 * 10 9 7 33 33 H 1.08997 * 109.58685 * 294.84914 * 11 10 9 34 34 H 1.09004 * 109.58308 * 174.42776 * 11 10 9 35 35 H 0.96999 * 120.00376 * 4.98124 * 15 13 12 36 36 H 1.09001 * 109.47124 * 300.00312 * 16 15 13 37 37 H 1.09008 * 109.47000 * 59.99840 * 16 15 13 38 38 H 1.08993 * 111.12643 * 273.27731 * 19 17 16 39 39 H 1.09002 * 111.12692 * 37.44986 * 19 17 16 40 40 H 1.09004 * 110.84459 * 207.67964 * 20 19 17 41 41 H 1.08994 * 111.02420 * 84.13704 * 20 19 17 42 42 H 0.97002 * 119.99738 * 0.02562 * 24 23 21 43 43 H 0.96996 * 119.99917 * 179.97438 * 24 23 21 44 44 H 1.09004 * 109.58796 * 293.82489 * 27 12 11 45 45 H 1.09001 * 109.58832 * 173.39815 * 27 12 11 46 46 H 1.09000 * 109.49782 * 301.33805 * 28 9 7 47 47 H 1.08999 * 109.49605 * 61.43372 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 0.3697 -2.5790 1.2491 11 6 -0.4206 -3.8912 1.2282 12 7 0.5222 -5.0087 1.0827 13 6 0.5116 -6.0343 1.9570 14 8 -0.2168 -5.9965 2.9298 15 7 1.3084 -7.1019 1.7530 16 6 1.2186 -8.2635 2.6413 17 6 2.2236 -9.3267 2.1938 18 1 3.2382 -8.9313 2.2416 19 6 2.0957 -10.5933 3.0771 20 6 2.6539 -11.6795 2.1175 21 6 2.1842 -11.1704 0.7378 22 1 1.2741 -11.6919 0.4415 23 6 3.2630 -11.4016 -0.2888 24 7 3.6207 -12.6584 -0.6191 25 8 3.8093 -10.4568 -0.8177 26 8 1.9226 -9.7675 0.8602 27 6 1.4769 -4.9866 -0.0338 28 6 2.2459 -3.6621 0.0005 29 1 -0.4850 0.8400 0.0004 30 1 0.6252 -2.5571 -0.8900 31 1 0.9969 -2.5461 2.1399 32 1 -0.3229 -1.7373 1.2599 33 1 -1.1144 -3.8866 0.3877 34 1 -0.9741 -3.9992 2.1610 35 1 1.9414 -7.1014 1.0180 36 1 1.4442 -7.9579 3.6629 37 1 0.2103 -8.6756 2.5996 38 1 2.7083 -10.5098 3.9747 39 1 1.0544 -10.7914 3.3313 40 1 2.2191 -12.6540 2.3400 41 1 3.7419 -11.7218 2.1656 42 1 3.1835 -13.4140 -0.1963 43 1 4.3148 -12.8072 -1.2801 44 1 0.9378 -5.0713 -0.9774 45 1 2.1754 -5.8174 0.0662 46 1 2.8884 -3.5912 -0.8771 47 1 2.8557 -3.6192 0.9029 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541920009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:41 Heat of formation + Delta-G solvation = -115.039170 kcal Electronic energy + Delta-G solvation = -28180.735493 eV Core-core repulsion = 24170.207948 eV Total energy + Delta-G solvation = -4010.527545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.79482 -39.78760 -38.64236 -36.83520 -34.61940 -34.19452 -33.42684 -32.56265 -31.17944 -30.61211 -29.68534 -26.68376 -25.66219 -23.25408 -22.74139 -22.11317 -21.83236 -20.68739 -20.03155 -18.78079 -18.10696 -17.90287 -17.55703 -16.43493 -16.31054 -16.12618 -15.87766 -15.03352 -14.97357 -14.62820 -14.44856 -14.25746 -13.76872 -13.60742 -13.20873 -13.07505 -12.90966 -12.61976 -12.47397 -12.38583 -12.18688 -11.93976 -11.71077 -11.64969 -11.51742 -11.02287 -10.86170 -10.63850 -10.61802 -10.33992 -10.12133 -9.97860 -9.72471 -9.67345 -9.47356 -9.09116 -8.87230 -8.80163 -8.29371 -7.77161 -5.94900 -4.01428 2.20017 2.79349 3.07802 3.34904 3.39584 3.42218 3.46994 3.67938 3.85954 4.18310 4.28868 4.36562 4.46973 4.57185 4.63066 4.83967 4.93801 5.10321 5.14932 5.29165 5.34489 5.48423 5.53591 5.58766 5.78996 5.90250 5.97670 6.17387 6.30043 6.36330 6.47852 6.53268 6.58913 6.72653 6.76502 6.88844 6.93124 7.08522 7.25552 7.34630 7.60093 7.78741 7.85792 8.02097 8.14341 8.43293 8.48230 9.01622 9.06130 9.63057 11.10421 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.002468 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.408096 B =11343.459815 C =12190.815682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.126 3.874 12 N -0.617 5.617 13 C 0.706 3.294 14 O -0.605 6.605 15 N -0.749 5.749 16 C 0.146 3.854 17 C 0.065 3.935 18 H 0.082 0.918 19 C -0.145 4.145 20 C -0.145 4.145 21 C 0.064 3.936 22 H 0.108 0.892 23 C 0.502 3.498 24 N -0.856 5.856 25 O -0.519 6.519 26 O -0.341 6.341 27 C 0.113 3.887 28 C -0.123 4.123 29 H 0.261 0.739 30 H 0.027 0.973 31 H 0.037 0.963 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.400 0.600 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.400 0.600 43 H 0.403 0.597 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.616 -29.233 3.447 29.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.161 4.161 11 C 0.004 3.996 12 N -0.354 5.354 13 C 0.407 3.593 14 O -0.485 6.485 15 N -0.408 5.408 16 C 0.021 3.979 17 C 0.007 3.993 18 H 0.100 0.900 19 C -0.183 4.183 20 C -0.183 4.183 21 C 0.002 3.998 22 H 0.126 0.874 23 C 0.285 3.715 24 N -0.422 5.422 25 O -0.393 6.393 26 O -0.259 6.259 27 C -0.010 4.010 28 C -0.162 4.162 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.238 0.762 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.228 0.772 43 H 0.234 0.766 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.062 -28.153 3.742 28.689 hybrid contribution 1.052 0.250 -0.398 1.152 sum 5.114 -27.902 3.343 28.563 Atomic orbital electron populations 1.69837 1.05830 1.26516 1.50758 1.24964 0.94860 0.99011 0.95160 0.86682 0.79612 0.83293 0.78528 1.21340 1.20379 1.20366 1.21160 0.92825 0.90648 1.50446 0.92831 1.18621 0.92594 0.91484 0.94202 1.22015 1.00035 0.94923 0.99169 1.21760 0.90892 0.85746 1.01157 1.47428 1.37992 1.21486 1.28452 1.15839 0.80690 0.79951 0.82794 1.90845 1.46039 1.81278 1.30353 1.45153 1.43611 1.16584 1.35417 1.21231 0.98774 0.84022 0.93859 1.23406 0.99225 0.94689 0.81981 0.90018 1.23250 1.03334 0.92974 0.98741 1.23108 1.02428 1.00354 0.92361 1.22625 0.97096 0.85362 0.94717 0.87435 1.21093 0.83975 0.83123 0.83304 1.43839 1.43737 1.07754 1.46884 1.90802 1.53959 1.41632 1.52928 1.88607 1.86502 1.20600 1.30176 1.21710 0.91187 0.98940 0.89167 1.22010 0.98931 0.94363 1.00867 0.92940 0.95486 0.94389 0.87914 0.92619 0.90589 0.76237 0.90314 0.91235 0.88866 0.89190 0.88777 0.89872 0.77171 0.76598 0.91937 0.92094 0.92166 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 11.30 55.43 0.63 -24.78 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.09 8.56 -34.44 -0.29 -14.39 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.23 2.06 -91.73 -0.19 1.04 16 10 C -0.12 -2.97 5.15 -26.61 -0.14 -3.11 16 11 C 0.13 2.70 6.44 -3.71 -0.02 2.68 16 12 N -0.62 -12.17 2.97 -178.50 -0.53 -12.70 16 13 C 0.71 13.68 8.29 -86.92 -0.72 12.96 16 14 O -0.61 -13.50 15.77 5.29 0.08 -13.42 16 15 N -0.75 -11.43 5.39 -65.23 -0.35 -11.78 16 16 C 0.15 1.75 5.41 -4.04 -0.02 1.73 16 17 C 0.06 0.60 3.51 -25.71 -0.09 0.51 16 18 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 19 C -0.14 -0.78 6.57 -24.48 -0.16 -0.94 16 20 C -0.14 -0.60 6.52 -24.78 -0.16 -0.76 16 21 C 0.06 0.46 3.94 -27.16 -0.11 0.35 16 22 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 23 C 0.50 4.47 7.30 -10.98 -0.08 4.39 16 24 N -0.86 -3.57 8.85 31.22 0.28 -3.29 16 25 O -0.52 -7.55 17.36 -14.09 -0.24 -7.80 16 26 O -0.34 -3.82 10.10 -54.88 -0.55 -4.37 16 27 C 0.11 2.03 6.39 -3.71 -0.02 2.00 16 28 C -0.12 -2.55 5.30 -26.61 -0.14 -2.70 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 2.74 6.03 -51.92 -0.31 2.43 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.65 7.00 -51.93 -0.36 1.29 16 35 H 0.40 5.80 5.90 -40.82 -0.24 5.56 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.43 8.06 -51.93 -0.42 0.01 16 40 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.08 0.36 7.84 -51.93 -0.41 -0.05 16 42 H 0.40 0.27 8.83 -40.82 -0.36 -0.09 16 43 H 0.40 1.49 8.93 -40.82 -0.36 1.13 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.94 5.65 -51.93 -0.29 0.65 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -36.43 375.35 -9.68 -46.11 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.38 Total: 4.55 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.25 Total: 5.36 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.02 Total: -52.56 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.72 Total: -25.59 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.43 -9.68 -46.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541920009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.931 kcal (2) G-P(sol) polarization free energy of solvation -36.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds