Wall clock time and date at job start Fri Apr 10 2020 18:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99725 * 2 1 4 4 H 1.48500 * 109.47147 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47387 * 120.00047 * 3 2 1 6 6 H 1.48502 * 109.46945 * 240.00033 * 3 2 1 7 7 C 1.37879 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99987 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99536 * 0.02562 * 7 2 1 10 10 C 1.53035 * 109.46124 * 300.05944 * 9 7 2 11 11 C 1.53196 * 109.31237 * 178.61645 * 10 9 7 12 12 N 1.46926 * 108.77292 * 54.64038 * 11 10 9 13 13 C 1.34778 * 120.62871 * 126.36669 * 12 11 10 14 14 O 1.21581 * 120.00294 * 354.79434 * 13 12 11 15 15 N 1.34774 * 119.99738 * 174.79216 * 13 12 11 16 16 C 1.46499 * 120.00142 * 184.98512 * 15 13 12 17 17 C 1.52995 * 109.47475 * 180.02562 * 16 15 13 18 18 H 1.08999 * 110.27318 * 60.63771 * 17 16 15 19 19 C 1.54945 * 110.31002 * 182.83099 * 17 16 15 20 20 C 1.55311 * 100.93993 * 155.35977 * 19 17 16 21 21 C 1.54383 * 102.25283 * 325.86592 * 20 19 17 22 22 H 1.08999 * 109.83019 * 261.84150 * 21 20 19 23 23 C 1.50706 * 109.90418 * 140.91122 * 21 20 19 24 24 N 1.34781 * 119.99720 * 65.36864 * 23 21 20 25 25 O 1.21278 * 120.00041 * 245.36990 * 23 21 20 26 26 O 1.43231 * 107.58789 * 21.35905 * 21 20 19 27 27 C 1.46920 * 118.73969 * 306.39044 * 12 11 10 28 28 C 1.53042 * 109.45624 * 179.97438 * 9 7 2 29 29 H 0.96997 * 120.00281 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46084 * 60.02721 * 9 7 2 31 31 H 1.08996 * 109.50422 * 298.57304 * 10 9 7 32 32 H 1.09008 * 109.49697 * 58.66950 * 10 9 7 33 33 H 1.08997 * 109.58685 * 294.84914 * 11 10 9 34 34 H 1.09004 * 109.58308 * 174.42776 * 11 10 9 35 35 H 0.96999 * 120.00376 * 4.98124 * 15 13 12 36 36 H 1.09001 * 109.47124 * 300.00312 * 16 15 13 37 37 H 1.09008 * 109.47000 * 59.99840 * 16 15 13 38 38 H 1.08993 * 111.12643 * 273.27731 * 19 17 16 39 39 H 1.09002 * 111.12692 * 37.44986 * 19 17 16 40 40 H 1.09004 * 110.84459 * 207.67964 * 20 19 17 41 41 H 1.08994 * 111.02420 * 84.13704 * 20 19 17 42 42 H 0.97002 * 119.99738 * 0.02562 * 24 23 21 43 43 H 0.96996 * 119.99917 * 179.97438 * 24 23 21 44 44 H 1.09004 * 109.58796 * 293.82489 * 27 12 11 45 45 H 1.09001 * 109.58832 * 173.39815 * 27 12 11 46 46 H 1.09000 * 109.49782 * 301.33805 * 28 9 7 47 47 H 1.08999 * 109.49605 * 61.43372 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 0.3697 -2.5790 1.2491 11 6 -0.4206 -3.8912 1.2282 12 7 0.5222 -5.0087 1.0827 13 6 0.5116 -6.0343 1.9570 14 8 -0.2168 -5.9965 2.9298 15 7 1.3084 -7.1019 1.7530 16 6 1.2186 -8.2635 2.6413 17 6 2.2236 -9.3267 2.1938 18 1 3.2382 -8.9313 2.2416 19 6 2.0957 -10.5933 3.0771 20 6 2.6539 -11.6795 2.1175 21 6 2.1842 -11.1704 0.7378 22 1 1.2741 -11.6919 0.4415 23 6 3.2630 -11.4016 -0.2888 24 7 3.6207 -12.6584 -0.6191 25 8 3.8093 -10.4568 -0.8177 26 8 1.9226 -9.7675 0.8602 27 6 1.4769 -4.9866 -0.0338 28 6 2.2459 -3.6621 0.0005 29 1 -0.4850 0.8400 0.0004 30 1 0.6252 -2.5571 -0.8900 31 1 0.9969 -2.5461 2.1399 32 1 -0.3229 -1.7373 1.2599 33 1 -1.1144 -3.8866 0.3877 34 1 -0.9741 -3.9992 2.1610 35 1 1.9414 -7.1014 1.0180 36 1 1.4442 -7.9579 3.6629 37 1 0.2103 -8.6756 2.5996 38 1 2.7083 -10.5098 3.9747 39 1 1.0544 -10.7914 3.3313 40 1 2.2191 -12.6540 2.3400 41 1 3.7419 -11.7218 2.1656 42 1 3.1835 -13.4140 -0.1963 43 1 4.3148 -12.8072 -1.2801 44 1 0.9378 -5.0713 -0.9774 45 1 2.1754 -5.8174 0.0662 46 1 2.8884 -3.5912 -0.8771 47 1 2.8557 -3.6192 0.9029 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541920009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:40 Heat of formation + Delta-G solvation = -142.784774 kcal Electronic energy + Delta-G solvation = -28181.938632 eV Core-core repulsion = 24170.207948 eV Total energy + Delta-G solvation = -4011.730685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57063 -41.15013 -39.40186 -38.50559 -35.87852 -35.32331 -34.80376 -33.17216 -32.88169 -31.99548 -30.96080 -28.15771 -26.96591 -24.75423 -24.01956 -23.34875 -22.60449 -21.69489 -21.26518 -20.34991 -19.18972 -18.61718 -18.40575 -18.30060 -17.30030 -17.16999 -16.80868 -16.53379 -16.37994 -15.72289 -15.58594 -15.21780 -15.09377 -14.89950 -14.62519 -14.48261 -14.29701 -14.02450 -13.75304 -13.43965 -13.36966 -12.98012 -12.94060 -12.78612 -12.65847 -12.50074 -12.31569 -12.16924 -11.93022 -11.90740 -11.44004 -11.35262 -11.30434 -10.94447 -10.80022 -10.66162 -10.40770 -10.40115 -10.20379 -9.38430 -8.06688 -6.20920 1.42276 1.43264 1.50746 1.57845 1.70692 2.13341 2.29578 2.44376 2.81040 3.03341 3.19346 3.40548 3.69283 3.91866 3.99574 4.06059 4.10112 4.20207 4.25433 4.31083 4.42992 4.49728 4.58054 4.60703 4.65143 4.71478 4.86881 4.89005 4.91205 4.96867 5.00104 5.19099 5.20263 5.21735 5.45789 5.48150 5.49837 5.65701 5.82279 5.96339 5.97606 6.05001 6.12082 6.38752 6.49270 6.89598 6.97439 7.36064 7.46755 7.55006 8.96739 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.002468 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.408096 B =11343.459815 C =12190.815682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.046 3.954 10 C -0.110 4.110 11 C 0.139 3.861 12 N -0.623 5.623 13 C 0.702 3.298 14 O -0.637 6.637 15 N -0.736 5.736 16 C 0.142 3.858 17 C 0.066 3.934 18 H 0.075 0.925 19 C -0.138 4.138 20 C -0.132 4.132 21 C 0.056 3.944 22 H 0.132 0.868 23 C 0.497 3.503 24 N -0.831 5.831 25 O -0.588 6.588 26 O -0.375 6.375 27 C 0.120 3.880 28 C -0.115 4.115 29 H 0.261 0.739 30 H 0.004 0.996 31 H 0.020 0.980 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.405 0.595 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.083 0.917 42 H 0.420 0.580 43 H 0.407 0.593 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 -32.015 3.834 32.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.028 3.972 10 C -0.149 4.149 11 C 0.016 3.984 12 N -0.359 5.359 13 C 0.403 3.597 14 O -0.520 6.520 15 N -0.393 5.393 16 C 0.018 3.982 17 C 0.008 3.992 18 H 0.092 0.908 19 C -0.176 4.176 20 C -0.170 4.170 21 C -0.005 4.005 22 H 0.149 0.851 23 C 0.282 3.718 24 N -0.397 5.397 25 O -0.467 6.467 26 O -0.294 6.294 27 C -0.003 4.003 28 C -0.153 4.153 29 H 0.070 0.930 30 H 0.022 0.978 31 H 0.039 0.961 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.243 0.757 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.151 0.849 41 H 0.101 0.899 42 H 0.252 0.748 43 H 0.239 0.761 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.008 -31.045 4.127 31.716 hybrid contribution 0.764 1.027 -0.534 1.387 sum 5.772 -30.018 3.593 30.778 Atomic orbital electron populations 1.69971 1.07044 1.27194 1.51245 1.25725 0.95699 1.02286 0.94895 0.85704 0.78440 0.79352 0.78690 1.20985 1.20044 1.19571 1.21540 0.93010 0.92148 1.50514 0.93022 1.18592 0.93063 0.92418 0.93153 1.21776 0.99304 0.95644 0.98206 1.21443 0.90828 0.85105 1.01070 1.47391 1.38079 1.21258 1.29134 1.15999 0.80924 0.80532 0.82203 1.90816 1.47546 1.82001 1.31631 1.45166 1.42259 1.16220 1.35698 1.21471 0.99697 0.83498 0.93493 1.23381 0.97587 0.95572 0.82626 0.90762 1.23280 1.04516 0.91002 0.98798 1.23146 1.02622 1.01543 0.89654 1.22947 0.97564 0.83992 0.96002 0.85065 1.21527 0.83776 0.83448 0.83061 1.43654 1.42980 1.07087 1.45990 1.90770 1.56501 1.43873 1.55558 1.88563 1.86703 1.23053 1.31075 1.21737 0.91200 0.98357 0.89015 1.21867 0.98190 0.94232 1.01037 0.92989 0.97788 0.96068 0.90685 0.92126 0.91183 0.75684 0.90097 0.91505 0.87244 0.88194 0.84933 0.89874 0.74774 0.76128 0.90958 0.89073 0.91039 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.37 11.30 21.45 0.24 -53.13 16 2 C 0.01 0.71 5.30 84.66 0.45 1.16 16 3 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.53 -29.82 8.56 25.60 0.22 -29.60 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.05 2.34 2.06 -11.51 -0.02 2.32 16 10 C -0.11 -5.53 5.15 30.67 0.16 -5.37 16 11 C 0.14 6.05 6.44 86.36 0.56 6.60 16 12 N -0.62 -24.43 2.97 -836.92 -2.49 -26.92 16 13 C 0.70 26.97 8.29 179.06 1.49 28.46 16 14 O -0.64 -28.52 15.77 -3.97 -0.06 -28.58 16 15 N -0.74 -21.84 5.39 -478.54 -2.58 -24.42 16 16 C 0.14 3.25 5.41 86.38 0.47 3.72 16 17 C 0.07 1.12 3.51 31.26 0.11 1.23 16 18 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 19 C -0.14 -1.06 6.57 32.05 0.21 -0.85 16 20 C -0.13 -0.60 6.52 31.86 0.21 -0.40 16 21 C 0.06 0.67 3.94 30.32 0.12 0.79 16 22 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 23 C 0.50 8.15 7.30 87.66 0.64 8.79 16 24 N -0.83 -4.96 8.85 -173.52 -1.54 -6.50 16 25 O -0.59 -17.17 17.36 15.77 0.27 -16.90 16 26 O -0.38 -7.91 10.10 -130.19 -1.31 -9.22 16 27 C 0.12 4.17 6.39 86.36 0.55 4.72 16 28 C -0.11 -4.73 5.30 30.67 0.16 -4.57 16 29 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 4.18 6.03 -2.38 -0.01 4.16 16 33 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.07 3.13 7.00 -2.38 -0.02 3.11 16 35 H 0.41 11.27 5.90 -92.71 -0.55 10.72 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.10 0.61 8.06 -2.39 -0.02 0.59 16 40 H 0.13 -0.36 8.14 -2.38 -0.02 -0.38 16 41 H 0.08 0.43 7.84 -2.39 -0.02 0.41 16 42 H 0.42 -0.91 8.83 -92.71 -0.82 -1.73 16 43 H 0.41 2.25 8.93 -92.71 -0.83 1.43 16 44 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 45 H 0.09 2.65 5.65 -2.39 -0.01 2.63 16 46 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 47 H 0.04 1.91 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -82.18 375.35 -1.31 -83.48 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -1.18 Total: 18.75 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 5.31 Total: 17.00 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -6.36 Total: -110.97 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -1.10 Total: -54.71 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -82.18 -1.31 -83.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541920009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.300 kcal (2) G-P(sol) polarization free energy of solvation -82.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds