Wall clock time and date at job start Fri Apr 10 2020 18:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99936 * 2 1 4 4 C 1.46903 * 110.99965 * 123.95388 * 2 1 3 5 5 C 1.53000 * 109.47002 * 169.99893 * 4 2 1 6 6 C 1.53002 * 109.47020 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47176 * 180.02562 * 6 5 4 8 8 C 1.46503 * 119.99972 * 269.99959 * 7 6 5 9 9 C 1.50694 * 109.47289 * 274.79129 * 8 7 6 10 10 H 1.07999 * 120.00001 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00066 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99783 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00143 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47129 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.46981 * 120.00483 * 13 11 9 16 16 H 1.48502 * 109.47189 * 240.00629 * 13 11 9 17 17 C 1.34773 * 119.99886 * 90.00220 * 7 6 5 18 18 O 1.21604 * 120.00310 * 4.80093 * 17 7 6 19 19 C 1.47435 * 120.00201 * 184.79957 * 17 7 6 20 20 C 1.38046 * 126.41168 * 310.71251 * 19 17 7 21 21 N 1.34262 * 107.41431 * 180.22167 * 20 19 17 22 22 H 0.96999 * 125.75504 * 179.76394 * 21 20 19 23 23 N 1.39941 * 108.49046 * 359.64062 * 21 20 19 24 24 C 1.30447 * 108.89724 * 0.36513 * 23 21 20 25 25 N 1.48005 * 125.98841 * 179.78444 * 24 23 21 26 26 O 1.21799 * 120.00100 * 180.02562 * 25 24 23 27 27 O 1.21802 * 119.99504 * 359.97438 * 25 24 23 28 28 H 1.08999 * 109.47163 * 296.04800 * 1 2 3 29 29 H 1.09002 * 109.46815 * 56.04792 * 1 2 3 30 30 H 1.08998 * 109.46868 * 176.04409 * 1 2 3 31 31 H 1.09001 * 109.47017 * 183.95213 * 3 2 1 32 32 H 1.08996 * 109.47008 * 303.94930 * 3 2 1 33 33 H 1.08997 * 109.47043 * 63.95433 * 3 2 1 34 34 H 1.08997 * 109.47212 * 50.00160 * 4 2 1 35 35 H 1.09004 * 109.46927 * 289.99899 * 4 2 1 36 36 H 1.09006 * 109.46906 * 60.00325 * 5 4 2 37 37 H 1.08997 * 109.47563 * 300.00084 * 5 4 2 38 38 H 1.08998 * 109.46855 * 59.99847 * 6 5 4 39 39 H 1.08997 * 109.47198 * 300.00524 * 6 5 4 40 40 H 1.09002 * 109.47205 * 34.79669 * 8 7 6 41 41 H 1.09005 * 109.46979 * 154.78912 * 8 7 6 42 42 H 0.97006 * 120.00132 * 179.97438 * 12 11 9 43 43 H 1.07998 * 126.29030 * 359.95711 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9703 6 6 4.0528 -1.7526 2.1555 7 7 5.4978 -1.9334 1.9957 8 6 6.0151 -3.1046 1.2836 9 6 6.1261 -4.2648 2.2390 10 1 5.8395 -4.1421 3.2730 11 6 6.5925 -5.4831 1.7927 12 7 6.9410 -5.6326 0.5334 13 14 6.7293 -6.9214 2.9767 14 1 6.2774 -6.4966 4.3260 15 1 5.8765 -8.0390 2.4986 16 1 8.1426 -7.3721 3.0468 17 6 6.3512 -1.0224 2.5037 18 8 5.9274 -0.0971 3.1693 19 6 7.7986 -1.1475 2.2525 20 6 8.5648 -2.2830 2.4238 21 7 9.8270 -1.9701 2.0899 22 1 10.5863 -2.5732 2.1158 23 7 9.8621 -0.6278 1.6956 24 6 8.6610 -0.1279 1.7913 25 7 8.2702 1.2636 1.4725 26 8 7.1115 1.6157 1.6024 27 8 9.1077 2.0568 1.0812 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3433 -0.0708 32 1 1.5899 1.9163 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5090 -1.7407 1.1756 35 1 1.7975 -0.2247 2.0628 36 1 3.9909 0.0194 0.9323 37 1 3.7024 -1.4966 0.0452 38 1 3.5663 -2.7272 2.1940 39 1 3.8549 -1.2111 3.0805 40 1 5.3359 -3.3658 0.4721 41 1 6.9991 -2.8756 0.8743 42 1 7.2695 -6.4896 0.2195 43 1 8.2142 -3.2448 2.7677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549204835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:44 Heat of formation + Delta-G solvation = 50.637526 kcal Electronic energy + Delta-G solvation = -28655.293834 eV Core-core repulsion = 24548.410226 eV Total energy + Delta-G solvation = -4106.883608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.21771 -41.20356 -38.92975 -37.48402 -36.30580 -35.26303 -33.15644 -32.41353 -31.84838 -30.25649 -27.60859 -27.49847 -27.01001 -25.96266 -23.47670 -23.07705 -22.11812 -21.45268 -20.58145 -19.56964 -18.30037 -17.77125 -17.53004 -17.44009 -16.77949 -16.30436 -15.75433 -15.35492 -15.02835 -14.95973 -14.61850 -14.50544 -14.08915 -13.69892 -13.48494 -12.87951 -12.42634 -12.34065 -12.12962 -11.81468 -11.72185 -11.52974 -11.44179 -11.34587 -11.32733 -11.25178 -11.04221 -11.02952 -10.91134 -10.87505 -10.40425 -10.31967 -10.14189 -9.93277 -9.39743 -8.99612 -8.74046 -8.27962 -7.83485 -6.43762 -4.54851 0.25669 1.01404 1.58429 2.20557 2.71783 3.00760 3.13550 3.16053 3.34636 3.77264 4.08250 4.12090 4.44796 4.81514 4.92133 5.13677 5.18913 5.22186 5.33429 5.42524 5.44947 5.64522 5.68799 5.72650 5.74642 5.83340 5.85218 5.97924 6.07734 6.19858 6.49565 6.51167 6.56852 6.69416 6.71654 6.92620 7.01772 7.10506 7.13852 7.39299 7.52170 7.80682 7.91418 8.17395 8.56260 8.86074 9.14699 10.60848 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.007718 B = 0.005728 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3627.131334 B = 4887.261881 C = 7941.620921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.021 3.979 4 C 0.060 3.940 5 C -0.131 4.131 6 C 0.126 3.874 7 N -0.585 5.585 8 C 0.231 3.769 9 C -0.548 4.548 10 H 0.067 0.933 11 C 0.067 3.933 12 N -0.882 5.882 13 Si 0.892 3.108 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.282 1.282 17 C 0.586 3.414 18 O -0.539 6.539 19 C -0.223 4.223 20 C 0.147 3.853 21 N -0.424 5.424 22 H 0.458 0.542 23 N -0.230 5.230 24 C 0.161 3.839 25 N 0.055 4.945 26 O -0.094 6.094 27 O -0.150 6.150 28 H 0.022 0.978 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.037 0.963 42 H 0.268 0.732 43 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.495 4.512 1.084 5.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.127 4.127 4 C -0.068 4.068 5 C -0.170 4.170 6 C 0.002 3.998 7 N -0.315 5.315 8 C 0.110 3.890 9 C -0.586 4.586 10 H 0.085 0.915 11 C -0.138 4.138 12 N -0.519 5.519 13 Si 0.718 3.282 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.208 1.208 17 C 0.371 3.629 18 O -0.417 6.417 19 C -0.240 4.240 20 C -0.004 4.004 21 N -0.137 5.137 22 H 0.306 0.694 23 N -0.062 5.062 24 C -0.084 4.084 25 N 0.582 4.418 26 O -0.319 6.319 27 O -0.363 6.363 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.128 4.257 0.677 4.456 hybrid contribution -0.550 -0.926 1.218 1.626 sum -1.678 3.331 1.895 4.184 Atomic orbital electron populations 1.22362 0.87766 1.02058 1.00124 1.61971 1.07395 1.14137 1.43702 1.22440 1.01709 0.88515 1.00020 1.22060 0.95913 0.97937 0.90925 1.21965 0.93850 1.01442 0.99785 1.21216 0.80329 1.00370 0.97866 1.47964 1.05357 1.23575 1.54622 1.19552 0.95714 0.81226 0.92459 1.21622 1.44948 0.95217 0.96824 0.91466 1.25002 0.94981 0.98547 0.95230 1.69950 1.42270 1.25404 1.14286 0.86532 0.77990 0.82381 0.81251 1.19372 1.20548 1.20780 1.16933 0.83590 0.82348 0.79984 1.90757 1.78035 1.33345 1.39565 1.20091 0.97089 0.91358 1.15431 1.24301 0.82319 1.00494 0.93245 1.46112 1.10415 1.07730 1.49448 0.69440 1.76975 1.17640 0.91949 1.19678 1.22576 0.93235 0.85554 1.07034 1.42156 1.00967 0.99955 0.98706 1.94695 1.02429 1.80550 1.54205 1.94556 1.47183 1.47289 1.47303 0.95913 0.91671 0.91454 0.90592 0.91836 0.95671 0.90734 0.94733 0.91392 0.90979 0.90114 0.90759 0.94274 0.94514 0.92255 0.75514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.57 60.06 0.57 0.84 16 2 N -0.55 -7.23 5.02 -251.26 -1.26 -8.50 16 3 C 0.02 0.26 9.32 60.07 0.56 0.82 16 4 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 5 C -0.13 -2.09 5.46 -26.73 -0.15 -2.24 16 6 C 0.13 2.18 5.46 -4.04 -0.02 2.16 16 7 N -0.59 -11.50 2.46 -176.33 -0.43 -11.93 16 8 C 0.23 4.90 4.71 -5.19 -0.02 4.87 16 9 C -0.55 -12.07 7.41 -34.44 -0.26 -12.32 16 10 H 0.07 1.51 7.81 -52.49 -0.41 1.10 16 11 C 0.07 1.52 5.46 -17.82 -0.10 1.42 16 12 N -0.88 -21.35 13.29 55.43 0.74 -20.61 16 13 Si 0.89 17.72 29.54 -169.99 -5.02 12.70 16 14 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 15 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 17 C 0.59 12.02 6.88 -12.52 -0.09 11.93 16 18 O -0.54 -12.07 15.01 -14.65 -0.22 -12.29 16 19 C -0.22 -4.22 5.01 -105.06 -0.53 -4.74 16 20 C 0.15 2.33 9.82 -16.56 -0.16 2.17 16 21 N -0.42 -5.67 7.29 30.85 0.22 -5.45 16 22 H 0.46 4.05 8.96 -182.72 -1.64 2.41 16 23 N -0.23 -3.84 12.60 33.24 0.42 -3.42 16 24 C 0.16 3.05 8.20 -146.19 -1.20 1.85 16 25 N 0.05 1.08 4.45 33.23 0.15 1.23 16 26 O -0.09 -1.94 16.78 -35.88 -0.60 -2.55 16 27 O -0.15 -2.87 19.23 -29.46 -0.57 -3.44 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.08 1.03 6.47 -51.93 -0.34 0.70 16 32 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 35 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 36 H 0.07 1.18 6.55 -51.93 -0.34 0.84 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.35 8.07 -51.93 -0.42 0.94 16 39 H 0.07 1.29 7.36 -51.93 -0.38 0.91 16 40 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 41 H 0.04 0.81 5.59 -51.93 -0.29 0.52 16 42 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 43 H 0.23 3.59 5.93 -52.49 -0.31 3.28 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -28.28 367.38 -9.50 -37.78 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.06 Total: 3.38 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -1.40 Total: 7.56 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.17 Total: -48.68 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -1.39 Total: -18.27 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.02 Total: 12.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.28 -9.50 -37.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549204835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.416 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds