Wall clock time and date at job start Fri Apr 10 2020 18:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99936 * 2 1 4 4 C 1.46903 * 110.99965 * 123.95388 * 2 1 3 5 5 C 1.53000 * 109.47002 * 169.99893 * 4 2 1 6 6 C 1.53002 * 109.47020 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47176 * 180.02562 * 6 5 4 8 8 C 1.46503 * 119.99972 * 269.99959 * 7 6 5 9 9 C 1.50694 * 109.47289 * 274.79129 * 8 7 6 10 10 H 1.07999 * 120.00001 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00066 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99783 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00143 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47129 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.46981 * 120.00483 * 13 11 9 16 16 H 1.48502 * 109.47189 * 240.00629 * 13 11 9 17 17 C 1.34773 * 119.99886 * 90.00220 * 7 6 5 18 18 O 1.21604 * 120.00310 * 4.80093 * 17 7 6 19 19 C 1.47435 * 120.00201 * 184.79957 * 17 7 6 20 20 C 1.38046 * 126.41168 * 310.71251 * 19 17 7 21 21 N 1.34262 * 107.41431 * 180.22167 * 20 19 17 22 22 H 0.96999 * 125.75504 * 179.76394 * 21 20 19 23 23 N 1.39941 * 108.49046 * 359.64062 * 21 20 19 24 24 C 1.30447 * 108.89724 * 0.36513 * 23 21 20 25 25 N 1.48005 * 125.98841 * 179.78444 * 24 23 21 26 26 O 1.21799 * 120.00100 * 180.02562 * 25 24 23 27 27 O 1.21802 * 119.99504 * 359.97438 * 25 24 23 28 28 H 1.08999 * 109.47163 * 296.04800 * 1 2 3 29 29 H 1.09002 * 109.46815 * 56.04792 * 1 2 3 30 30 H 1.08998 * 109.46868 * 176.04409 * 1 2 3 31 31 H 1.09001 * 109.47017 * 183.95213 * 3 2 1 32 32 H 1.08996 * 109.47008 * 303.94930 * 3 2 1 33 33 H 1.08997 * 109.47043 * 63.95433 * 3 2 1 34 34 H 1.08997 * 109.47212 * 50.00160 * 4 2 1 35 35 H 1.09004 * 109.46927 * 289.99899 * 4 2 1 36 36 H 1.09006 * 109.46906 * 60.00325 * 5 4 2 37 37 H 1.08997 * 109.47563 * 300.00084 * 5 4 2 38 38 H 1.08998 * 109.46855 * 59.99847 * 6 5 4 39 39 H 1.08997 * 109.47198 * 300.00524 * 6 5 4 40 40 H 1.09002 * 109.47205 * 34.79669 * 8 7 6 41 41 H 1.09005 * 109.46979 * 154.78912 * 8 7 6 42 42 H 0.97006 * 120.00132 * 179.97438 * 12 11 9 43 43 H 1.07998 * 126.29030 * 359.95711 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9703 6 6 4.0528 -1.7526 2.1555 7 7 5.4978 -1.9334 1.9957 8 6 6.0151 -3.1046 1.2836 9 6 6.1261 -4.2648 2.2390 10 1 5.8395 -4.1421 3.2730 11 6 6.5925 -5.4831 1.7927 12 7 6.9410 -5.6326 0.5334 13 14 6.7293 -6.9214 2.9767 14 1 6.2774 -6.4966 4.3260 15 1 5.8765 -8.0390 2.4986 16 1 8.1426 -7.3721 3.0468 17 6 6.3512 -1.0224 2.5037 18 8 5.9274 -0.0971 3.1693 19 6 7.7986 -1.1475 2.2525 20 6 8.5648 -2.2830 2.4238 21 7 9.8270 -1.9701 2.0899 22 1 10.5863 -2.5732 2.1158 23 7 9.8621 -0.6278 1.6956 24 6 8.6610 -0.1279 1.7913 25 7 8.2702 1.2636 1.4725 26 8 7.1115 1.6157 1.6024 27 8 9.1077 2.0568 1.0812 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3433 -0.0708 32 1 1.5899 1.9163 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5090 -1.7407 1.1756 35 1 1.7975 -0.2247 2.0628 36 1 3.9909 0.0194 0.9323 37 1 3.7024 -1.4966 0.0452 38 1 3.5663 -2.7272 2.1940 39 1 3.8549 -1.2111 3.0805 40 1 5.3359 -3.3658 0.4721 41 1 6.9991 -2.8756 0.8743 42 1 7.2695 -6.4896 0.2195 43 1 8.2142 -3.2448 2.7677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549204835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:43 Heat of formation + Delta-G solvation = 34.324948 kcal Electronic energy + Delta-G solvation = -28656.001200 eV Core-core repulsion = 24548.410226 eV Total energy + Delta-G solvation = -4107.590974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.67668 -42.64650 -40.48932 -38.58753 -37.83815 -36.87075 -34.79778 -33.78355 -33.29420 -31.62328 -29.26583 -28.49430 -28.44924 -27.25874 -25.08297 -24.47142 -23.49420 -22.86099 -21.75367 -21.02724 -19.82839 -19.23062 -18.98975 -18.92330 -18.50516 -17.82559 -17.16930 -16.51079 -16.42089 -16.20722 -16.15346 -15.73405 -15.41567 -14.94486 -14.90569 -14.44309 -14.06904 -13.50638 -13.33980 -13.23286 -12.96513 -12.90854 -12.86073 -12.82481 -12.65057 -12.59573 -12.54291 -12.43748 -12.36763 -12.31347 -11.96427 -11.66208 -11.61912 -11.47971 -11.02415 -10.64745 -10.28773 -9.46740 -9.28545 -8.19003 -6.35894 -1.24987 -0.40633 0.22545 0.70247 1.43927 1.47044 1.53615 1.61055 1.81087 2.25290 2.45891 3.01645 3.06718 3.10521 3.43290 3.78540 3.88903 4.05841 4.15668 4.26541 4.39869 4.46839 4.48939 4.55040 4.67530 4.70258 4.78492 4.84690 4.90889 4.98224 5.03601 5.04730 5.17451 5.23696 5.33507 5.35415 5.68805 5.81765 5.84154 6.04960 6.08203 6.15876 6.37603 6.52956 6.81387 7.23776 7.39085 8.85625 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.007718 B = 0.005728 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3627.131334 B = 4887.261881 C = 7941.620921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.565 5.565 3 C 0.023 3.977 4 C 0.067 3.933 5 C -0.117 4.117 6 C 0.125 3.875 7 N -0.586 5.586 8 C 0.246 3.754 9 C -0.545 4.545 10 H 0.065 0.935 11 C 0.036 3.964 12 N -0.912 5.912 13 Si 0.950 3.050 14 H -0.268 1.268 15 H -0.290 1.290 16 H -0.272 1.272 17 C 0.583 3.417 18 O -0.564 6.564 19 C -0.248 4.248 20 C 0.165 3.835 21 N -0.389 5.389 22 H 0.480 0.520 23 N -0.223 5.223 24 C 0.144 3.856 25 N 0.055 4.945 26 O -0.135 6.135 27 O -0.131 6.131 28 H 0.029 0.971 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.017 0.983 41 H 0.031 0.969 42 H 0.269 0.731 43 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 3.456 1.581 4.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.289 5.289 3 C -0.125 4.125 4 C -0.062 4.062 5 C -0.156 4.156 6 C 0.002 3.998 7 N -0.315 5.315 8 C 0.125 3.875 9 C -0.583 4.583 10 H 0.083 0.917 11 C -0.167 4.167 12 N -0.550 5.550 13 Si 0.776 3.224 14 H -0.192 1.192 15 H -0.216 1.216 16 H -0.198 1.198 17 C 0.370 3.630 18 O -0.444 6.444 19 C -0.265 4.265 20 C 0.013 3.987 21 N -0.106 5.106 22 H 0.333 0.667 23 N -0.057 5.057 24 C -0.101 4.101 25 N 0.579 4.421 26 O -0.349 6.349 27 O -0.351 6.351 28 H 0.048 0.952 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.035 0.965 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.814 3.193 1.191 3.503 hybrid contribution -0.574 -0.613 1.019 1.321 sum -1.388 2.580 2.210 3.670 Atomic orbital electron populations 1.22422 0.85881 1.02882 1.01051 1.61960 1.09183 1.14362 1.43419 1.22414 1.00581 0.88571 1.00922 1.21959 0.94010 0.98775 0.91409 1.21784 0.95679 0.99789 0.98369 1.21332 0.79300 1.00851 0.98362 1.48006 1.06290 1.23094 1.54155 1.19270 0.94784 0.81598 0.91854 1.21661 1.44606 0.95432 0.96591 0.91699 1.25542 0.94558 1.00368 0.96190 1.70039 1.43206 1.26006 1.15771 0.85628 0.78086 0.79298 0.79419 1.19179 1.21627 1.19759 1.17165 0.84429 0.81907 0.79534 1.90730 1.78713 1.34187 1.40746 1.20094 0.96631 0.92594 1.17165 1.24183 0.82675 0.99595 0.92248 1.46118 1.10521 1.06837 1.47145 0.66682 1.76945 1.16524 0.93122 1.19119 1.22534 0.93912 0.85036 1.08575 1.42276 1.00826 1.00486 0.98467 1.94708 1.02833 1.81154 1.56205 1.94517 1.46893 1.47674 1.45990 0.95230 0.90394 0.90784 0.92556 0.90150 0.95394 0.89640 0.94409 0.93243 0.92457 0.89498 0.90868 0.96484 0.95128 0.92176 0.74912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.57 127.69 1.22 1.72 16 2 N -0.57 -14.54 5.02 -948.84 -4.76 -19.30 16 3 C 0.02 0.57 9.32 127.69 1.19 1.76 16 4 C 0.07 1.79 4.96 86.30 0.43 2.22 16 5 C -0.12 -3.84 5.46 30.59 0.17 -3.67 16 6 C 0.12 4.38 5.46 86.38 0.47 4.85 16 7 N -0.59 -23.37 2.46 -830.04 -2.04 -25.41 16 8 C 0.25 10.48 4.71 85.63 0.40 10.88 16 9 C -0.54 -23.53 7.41 25.60 0.19 -23.34 16 10 H 0.06 2.83 7.81 -2.91 -0.02 2.81 16 11 C 0.04 1.56 5.46 84.65 0.46 2.02 16 12 N -0.91 -43.36 13.29 21.45 0.28 -43.08 16 13 Si 0.95 35.13 29.54 68.60 2.03 37.15 16 14 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 15 H -0.29 -11.20 7.11 99.48 0.71 -10.49 16 16 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 17 C 0.58 24.29 6.88 86.67 0.60 24.88 16 18 O -0.56 -25.89 15.01 15.01 0.23 -25.66 16 19 C -0.25 -9.30 5.01 -20.15 -0.10 -9.40 16 20 C 0.16 4.98 9.82 84.28 0.83 5.81 16 21 N -0.39 -9.48 7.29 -56.31 -0.41 -9.89 16 22 H 0.48 6.91 8.96 -213.42 -1.91 5.00 16 23 N -0.22 -7.07 12.60 -48.75 -0.61 -7.69 16 24 C 0.14 5.38 8.20 130.80 1.07 6.45 16 25 N 0.05 2.18 4.45 -48.79 -0.22 1.96 16 26 O -0.13 -5.74 16.78 25.02 0.42 -5.32 16 27 O -0.13 -4.95 19.23 18.88 0.36 -4.58 16 28 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 30 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 31 H 0.06 1.59 6.47 -2.39 -0.02 1.58 16 32 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 33 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 2.10 8.06 -2.39 -0.02 2.08 16 35 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 36 H 0.05 1.80 6.55 -2.38 -0.02 1.78 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.09 2.92 8.07 -2.39 -0.02 2.90 16 39 H 0.07 2.59 7.36 -2.39 -0.02 2.57 16 40 H 0.02 0.80 8.11 -2.39 -0.02 0.78 16 41 H 0.03 1.35 5.59 -2.38 -0.01 1.34 16 42 H 0.27 12.21 8.31 -92.70 -0.77 11.44 16 43 H 0.23 6.94 5.93 -2.91 -0.02 6.93 16 Total: -1.00 -59.84 367.38 1.35 -58.49 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -0.86 Total: 19.15 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 6.93 Total: 24.19 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -7.76 Total: -103.40 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: 1.01 Total: -35.57 kcal Atomic # 14 Polarization: 35.13 SS G_CDS: 2.03 Total: 37.15 kcal Total: -59.84 1.35 -58.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549204835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.816 kcal (2) G-P(sol) polarization free energy of solvation -59.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds