Wall clock time and date at job start Fri Apr 10 2020 18:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99710 * 2 1 4 4 C 1.53006 * 109.46875 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47153 * 180.02562 * 4 3 2 6 6 N 1.46493 * 109.46814 * 179.97438 * 5 4 3 7 7 C 1.34965 * 125.97624 * 125.02772 * 6 5 4 8 8 C 1.35244 * 107.85999 * 179.97438 * 7 6 5 9 9 C 1.40401 * 107.86868 * 359.97438 * 8 7 6 10 10 N 1.40193 * 125.97600 * 179.97438 * 9 8 7 11 11 C 1.34777 * 119.99728 * 0.02562 * 10 9 8 12 12 O 1.21589 * 119.99982 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99754 * 179.97438 * 11 10 9 14 14 C 1.46509 * 119.99703 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46993 * 179.97438 * 14 13 11 16 16 O 1.21295 * 119.99668 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99812 * 179.97438 * 15 14 13 18 18 C 1.37103 * 119.99786 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99596 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00004 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00280 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99892 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47048 * 89.99931 * 22 20 18 24 24 H 1.48501 * 109.47069 * 210.00036 * 22 20 18 25 25 H 1.48499 * 109.47186 * 329.99563 * 22 20 18 26 26 N 1.31214 * 108.05413 * 359.97438 * 9 8 7 27 27 H 1.09000 * 109.47353 * 60.00095 * 1 2 3 28 28 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46991 * 299.99707 * 1 2 3 30 30 H 1.08998 * 109.47232 * 60.00635 * 3 2 1 31 31 H 1.08997 * 109.47568 * 299.99955 * 3 2 1 32 32 H 1.08996 * 109.47229 * 59.99596 * 4 3 2 33 33 H 1.09007 * 109.46620 * 300.00154 * 4 3 2 34 34 H 1.09003 * 109.46953 * 59.99661 * 5 4 3 35 35 H 1.08999 * 109.46502 * 299.99671 * 5 4 3 36 36 H 1.07999 * 126.06908 * 359.96859 * 7 6 5 37 37 H 1.07998 * 126.06683 * 179.97438 * 8 7 6 38 38 H 0.96999 * 120.00586 * 179.97438 * 10 9 8 39 39 H 0.96999 * 120.00560 * 359.97438 * 13 11 10 40 40 H 1.09000 * 109.47295 * 299.99904 * 14 13 11 41 41 H 1.08996 * 109.46572 * 60.00480 * 14 13 11 42 42 H 0.96995 * 119.99868 * 0.02562 * 17 15 14 43 43 H 0.97003 * 120.00581 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6182 2.4667 0.0000 7 6 6.4581 3.0294 -0.8941 8 6 7.7204 2.6875 -0.5495 9 6 7.6507 1.8849 0.6004 10 7 8.7406 1.3215 1.2787 11 6 9.9947 1.5351 0.8338 12 8 10.1809 2.2160 -0.1562 13 7 11.0425 0.9938 1.4863 14 6 12.4058 1.2256 1.0022 15 6 13.3855 0.5170 1.9019 16 8 12.9843 -0.1194 2.8534 17 7 14.7072 0.5895 1.6485 18 6 15.5985 -0.0547 2.4672 19 1 15.2413 -0.6206 3.3149 20 6 16.9611 0.0206 2.2064 21 7 17.8154 -0.5973 2.9908 22 14 17.5788 1.0000 0.7406 23 1 17.8329 2.4033 1.1545 24 1 18.8389 0.3964 0.2374 25 1 16.5557 0.9789 -0.3355 26 7 6.3872 1.7543 0.9292 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8568 0.6439 -0.8908 33 1 3.8574 0.6435 0.8892 34 1 3.8365 3.1228 0.8904 35 1 3.8358 3.1238 -0.8896 36 1 6.1728 3.6435 -1.7354 37 1 8.6221 2.9800 -1.0670 38 1 8.5922 0.7786 2.0687 39 1 10.8941 0.4509 2.2762 40 1 12.5010 0.8414 -0.0133 41 1 12.6162 2.2950 1.0075 42 1 15.0279 1.0981 0.8874 43 1 18.7668 -0.5445 2.8089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588249266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:59 Heat of formation + Delta-G solvation = -17.096617 kcal Electronic energy + Delta-G solvation = -25784.548634 eV Core-core repulsion = 21674.727853 eV Total energy + Delta-G solvation = -4109.820780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.46162 -39.93202 -38.52910 -38.39395 -35.60590 -34.56225 -34.17499 -33.76612 -31.81075 -30.73969 -30.02529 -27.97897 -27.18650 -25.30270 -24.35631 -22.54726 -21.96685 -21.01880 -20.29399 -19.61342 -18.77837 -18.01777 -17.64566 -16.95206 -16.75928 -16.17705 -15.85420 -15.69754 -15.42817 -15.21129 -14.99067 -14.70803 -14.52750 -14.21241 -14.09869 -13.54962 -13.16514 -13.07262 -12.88368 -12.69335 -12.51577 -12.28112 -12.18652 -12.16201 -11.64128 -11.55806 -11.24300 -10.86628 -10.76689 -10.64319 -10.21101 -10.06994 -10.02924 -9.70371 -9.06775 -8.89726 -8.78734 -8.31303 -8.21928 -6.40978 -3.93819 1.71496 1.90042 2.63386 2.73337 2.99793 3.04472 3.12887 3.25944 3.42262 3.56681 4.03279 4.11145 4.20493 4.46796 4.53381 4.55025 4.64054 4.69722 4.78962 4.84350 4.87368 4.93729 5.13898 5.17240 5.19731 5.50431 5.57403 5.64158 5.70154 5.75721 5.77412 5.81038 6.14013 6.54295 6.60748 6.69555 6.84270 6.93910 7.43946 7.58569 7.99137 8.05179 8.42829 8.54469 8.81294 9.29188 9.62334 10.71100 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.033861 B = 0.001663 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.720170 B =16837.272170 C =17415.231398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.065 3.935 4 C -0.134 4.134 5 C 0.146 3.854 6 N -0.373 5.373 7 C 0.058 3.942 8 C -0.262 4.262 9 C 0.325 3.675 10 N -0.649 5.649 11 C 0.716 3.284 12 O -0.574 6.574 13 N -0.716 5.716 14 C 0.126 3.874 15 C 0.437 3.563 16 O -0.579 6.579 17 N -0.575 5.575 18 C -0.311 4.311 19 H 0.122 0.878 20 C 0.046 3.954 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.266 1.266 26 N -0.326 5.326 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.413 0.587 39 H 0.411 0.589 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.375 0.625 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.557 8.420 -9.681 33.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.013 4.013 4 C -0.172 4.172 5 C 0.025 3.975 6 N -0.158 5.158 7 C -0.086 4.086 8 C -0.292 4.292 9 C 0.068 3.932 10 N -0.300 5.300 11 C 0.415 3.585 12 O -0.450 6.450 13 N -0.374 5.374 14 C -0.002 4.002 15 C 0.223 3.777 16 O -0.463 6.463 17 N -0.213 5.213 18 C -0.439 4.439 19 H 0.139 0.861 20 C -0.158 4.158 21 N -0.513 5.513 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 N -0.157 5.157 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.193 0.807 37 H 0.192 0.808 38 H 0.249 0.751 39 H 0.249 0.751 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.208 0.792 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -31.136 7.880 -9.065 33.372 hybrid contribution 0.867 0.747 -0.883 1.446 sum -30.268 8.627 -9.948 33.009 Atomic orbital electron populations 1.22767 0.80687 1.03028 1.00027 1.87903 1.19947 1.27644 1.95424 1.22401 0.93335 0.85121 1.00421 1.21780 0.93152 0.96902 1.05360 1.21449 0.74572 0.97672 1.03850 1.48020 1.05610 1.40610 1.21536 1.22593 0.89986 0.99906 0.96163 1.21915 0.98513 1.07931 1.00848 1.18830 0.86424 0.95092 0.92873 1.41599 1.02555 1.54131 1.31704 1.15543 0.79561 0.80477 0.82943 1.90836 1.84036 1.43261 1.26899 1.44693 1.04383 1.55399 1.32883 1.20874 0.80121 1.01207 0.98024 1.19613 0.83215 0.86709 0.88133 1.90547 1.77788 1.46104 1.31863 1.42101 1.05434 1.46580 1.27148 1.19444 0.86370 1.28645 1.09469 0.86065 1.25061 0.95620 0.97309 0.97845 1.69616 1.02877 1.41410 1.37366 0.86670 0.79655 0.80823 0.82344 1.19382 1.19998 1.19170 1.77312 1.00704 1.22188 1.15453 0.93991 0.89442 0.93923 0.92885 0.93064 0.90388 0.89350 0.89760 0.88423 0.80750 0.80779 0.75132 0.75090 0.89500 0.89502 0.79194 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.17 10.70 -35.23 -0.38 -3.55 16 3 C 0.06 0.36 5.94 37.16 0.22 0.58 16 4 C -0.13 -0.93 5.77 -26.73 -0.15 -1.09 16 5 C 0.15 0.87 6.51 -4.04 -0.03 0.84 16 6 N -0.37 -3.76 3.68 -61.38 -0.23 -3.99 16 7 C 0.06 0.57 11.44 -17.24 -0.20 0.37 16 8 C -0.26 -3.45 9.61 -39.83 -0.38 -3.84 16 9 C 0.32 4.56 8.11 -154.36 -1.25 3.31 16 10 N -0.65 -8.70 5.46 -15.51 -0.08 -8.78 16 11 C 0.72 11.09 8.53 -86.92 -0.74 10.34 16 12 O -0.57 -10.09 13.47 5.29 0.07 -10.02 16 13 N -0.72 -11.14 5.53 -66.41 -0.37 -11.51 16 14 C 0.13 2.10 6.15 -5.19 -0.03 2.07 16 15 C 0.44 9.40 7.85 -10.98 -0.09 9.31 16 16 O -0.58 -14.36 15.24 5.54 0.08 -14.28 16 17 N -0.58 -13.13 5.09 -10.96 -0.06 -13.19 16 18 C -0.31 -8.48 10.16 -14.93 -0.15 -8.64 16 19 H 0.12 3.77 7.39 -52.49 -0.39 3.39 16 20 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 21 N -0.87 -24.81 13.96 55.50 0.77 -24.03 16 22 Si 0.88 18.80 27.74 -169.99 -4.71 14.08 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 26 N -0.33 -4.29 12.43 31.44 0.39 -3.90 16 27 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.28 8.07 -51.93 -0.42 -0.14 16 36 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.18 2.54 5.91 -52.49 -0.31 2.23 16 38 H 0.41 4.58 8.84 -40.82 -0.36 4.21 16 39 H 0.41 6.25 7.45 -40.82 -0.30 5.95 16 40 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 43 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -35.17 371.80 -6.52 -41.69 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -5.84 Total: 16.21 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: -1.79 Total: 15.67 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: 0.43 Total: -65.40 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.22 Total: -27.85 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.71 Total: 14.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.17 -6.52 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588249266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.593 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds