Wall clock time and date at job start Fri Apr 10 2020 18:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99776 * 2 1 4 4 C 1.53002 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46751 * 54.99725 * 4 3 2 6 6 C 1.53001 * 109.47172 * 295.00321 * 4 3 2 7 7 N 1.46499 * 109.47195 * 175.00039 * 4 3 2 8 8 C 1.34958 * 125.97492 * 84.99738 * 7 4 3 9 9 C 1.35245 * 107.85922 * 179.97438 * 8 7 4 10 10 C 1.40403 * 107.86382 * 0.02562 * 9 8 7 11 11 N 1.40201 * 125.96925 * 179.97438 * 10 9 8 12 12 C 1.34779 * 120.00212 * 359.97438 * 11 10 9 13 13 O 1.21587 * 119.99920 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99975 * 180.02562 * 12 11 10 15 15 C 1.46492 * 119.99900 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47159 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99790 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00177 * 179.97438 * 16 15 14 19 19 C 1.37101 * 120.00475 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99357 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00404 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00047 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00049 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.46978 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47149 * 119.99903 * 23 21 19 26 26 H 1.48499 * 109.46959 * 239.99578 * 23 21 19 27 27 N 1.31205 * 108.05774 * 359.97438 * 10 9 8 28 28 H 1.08994 * 109.47392 * 300.00106 * 1 2 3 29 29 H 1.09000 * 109.46906 * 60.00648 * 1 2 3 30 30 H 1.09007 * 109.47198 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47091 * 59.99925 * 3 2 1 32 32 H 1.08996 * 109.46896 * 299.99491 * 3 2 1 33 33 H 1.08995 * 109.47615 * 59.99723 * 6 4 3 34 34 H 1.09001 * 109.47114 * 180.02562 * 6 4 3 35 35 H 1.09004 * 109.47121 * 299.99815 * 6 4 3 36 36 H 1.07999 * 126.07233 * 0.02562 * 8 7 4 37 37 H 1.07998 * 126.07039 * 179.73402 * 9 8 7 38 38 H 0.97006 * 119.99497 * 180.02562 * 11 10 9 39 39 H 0.97006 * 119.99739 * 0.02562 * 14 12 11 40 40 H 1.09004 * 109.47086 * 299.99876 * 15 14 12 41 41 H 1.09001 * 109.47416 * 60.00000 * 15 14 12 42 42 H 0.97002 * 120.00085 * 0.02562 * 18 16 15 43 43 H 0.97004 * 120.00196 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5682 -0.8409 6 6 3.9952 0.5369 1.3083 7 7 4.1309 2.5178 -0.1197 8 6 4.3732 3.3725 0.8962 9 6 4.9270 4.4906 0.3744 10 6 5.0271 4.3137 -1.0148 11 7 5.5475 5.2418 -1.9278 12 6 6.0087 6.4306 -1.4913 13 8 5.9739 6.6980 -0.3057 14 7 6.5084 7.3230 -2.3690 15 6 7.0103 8.6149 -1.8946 16 6 7.5102 9.4205 -3.0659 17 8 7.4534 8.9605 -4.1867 18 7 8.0205 10.6521 -2.8680 19 6 8.4749 11.3853 -3.9337 20 1 8.4235 10.9760 -4.9318 21 6 9.0014 12.6548 -3.7296 22 7 9.0635 13.1530 -2.5153 23 14 9.6199 13.6540 -5.1818 24 1 9.4393 12.8737 -6.4323 25 1 8.8519 14.9216 -5.2734 26 1 11.0607 13.9606 -4.9939 27 7 4.5486 3.1280 -1.3093 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.5522 -0.4549 1.3979 34 1 5.0818 0.4513 1.3089 35 1 3.6792 1.1533 2.1499 36 1 4.1630 3.1949 1.9405 37 1 5.2332 5.3662 0.9275 38 1 5.5748 5.0285 -2.8737 39 1 6.5358 7.1097 -3.3150 40 1 6.2057 9.1568 -1.3973 41 1 7.8270 8.4514 -1.1914 42 1 8.0663 11.0199 -1.9716 43 1 9.4314 14.0391 -2.3727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588282525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:05 Heat of formation + Delta-G solvation = -19.701864 kcal Electronic energy + Delta-G solvation = -26173.104953 eV Core-core repulsion = 22063.171201 eV Total energy + Delta-G solvation = -4109.933752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.52584 -39.92118 -38.59567 -38.21831 -35.66401 -34.49670 -34.05540 -33.66566 -31.39371 -30.18396 -29.37555 -27.94796 -27.46366 -26.06081 -24.58105 -22.99860 -22.05371 -20.51865 -20.15301 -19.53813 -18.27659 -17.94350 -17.65997 -17.07106 -16.43004 -16.32313 -15.82123 -15.66624 -15.54345 -14.85313 -14.66901 -14.62506 -14.12095 -14.06282 -13.97645 -13.60963 -13.49004 -13.14586 -12.94106 -12.68663 -12.22825 -12.19190 -12.03926 -11.83368 -11.64215 -11.59015 -11.15464 -10.82510 -10.81007 -10.41427 -10.33349 -10.24335 -9.97874 -9.65914 -9.00693 -8.87114 -8.65319 -8.21755 -8.11169 -6.52562 -3.94601 1.69085 1.84297 2.65864 2.71211 3.09827 3.22438 3.29066 3.42211 3.47581 3.73152 4.04913 4.09655 4.25633 4.36810 4.60718 4.67207 4.80246 4.82326 4.85228 4.93675 4.98649 5.16179 5.16700 5.19455 5.27418 5.43020 5.59255 5.64533 5.76406 5.86281 5.95206 6.04291 6.18102 6.51069 6.64867 6.72940 6.87740 6.96170 7.45444 7.61985 7.91232 8.09072 8.43333 8.59271 9.03666 9.37877 9.85494 10.64286 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.042481 B = 0.001684 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.960563 B =16622.129118 C =16887.990765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.051 3.949 4 C 0.169 3.831 5 H 0.110 0.890 6 C -0.159 4.159 7 N -0.368 5.368 8 C 0.060 3.940 9 C -0.259 4.259 10 C 0.327 3.673 11 N -0.649 5.649 12 C 0.714 3.286 13 O -0.573 6.573 14 N -0.715 5.715 15 C 0.128 3.872 16 C 0.428 3.572 17 O -0.597 6.597 18 N -0.548 5.548 19 C -0.305 4.305 20 H 0.106 0.894 21 C 0.026 3.974 22 N -0.894 5.894 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.329 5.329 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.412 0.588 39 H 0.410 0.590 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.534 -23.119 9.238 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.027 4.027 4 C 0.067 3.933 5 H 0.128 0.872 6 C -0.217 4.217 7 N -0.154 5.154 8 C -0.085 4.085 9 C -0.290 4.290 10 C 0.070 3.930 11 N -0.301 5.301 12 C 0.414 3.586 13 O -0.449 6.449 14 N -0.372 5.372 15 C 0.000 4.000 16 C 0.213 3.787 17 O -0.484 6.484 18 N -0.183 5.183 19 C -0.435 4.435 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.534 5.534 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.159 5.159 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.191 0.809 37 H 0.193 0.807 38 H 0.248 0.752 39 H 0.248 0.752 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.666 -23.985 8.712 28.947 hybrid contribution 0.280 1.455 -0.428 1.542 sum -13.385 -22.531 8.283 27.485 Atomic orbital electron populations 1.22783 0.80184 1.03064 1.00343 1.87798 1.20319 1.26863 1.95547 1.22889 0.92923 0.85345 1.01572 1.20882 0.91023 0.79834 1.01572 0.87239 1.22150 1.02558 1.01986 0.95041 1.48069 1.49789 1.13840 1.03733 1.22521 1.00461 0.90366 0.95118 1.21939 1.12432 1.01986 0.92621 1.18845 0.95643 0.88793 0.89745 1.41632 1.64052 1.14438 1.09945 1.15567 0.78424 0.79343 0.85315 1.90838 1.61860 1.77713 1.14522 1.44717 1.65227 1.16314 1.10983 1.20857 0.99944 0.82869 0.96299 1.19718 0.85484 0.83920 0.89558 1.90501 1.62194 1.71118 1.24578 1.41782 1.52597 1.13044 1.10853 1.19784 1.37116 0.96958 0.89596 0.87595 1.25322 0.97197 0.97263 0.97898 1.69620 1.45062 1.18314 1.20388 0.85755 0.78272 0.79233 0.80812 1.19138 1.20620 1.20616 1.77353 1.25462 1.07994 1.05058 0.93822 0.93800 0.89207 0.92516 0.92244 0.89276 0.91239 0.91620 0.80870 0.80676 0.75192 0.75227 0.89631 0.89623 0.76986 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.91 10.24 -35.23 -0.36 -3.27 16 3 C 0.05 0.38 5.64 37.16 0.21 0.59 16 4 C 0.17 1.35 3.63 -67.93 -0.25 1.10 16 5 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 6 C -0.16 -0.90 8.73 37.16 0.32 -0.58 16 7 N -0.37 -3.98 3.52 -54.88 -0.19 -4.17 16 8 C 0.06 0.62 10.58 -17.24 -0.18 0.44 16 9 C -0.26 -3.53 9.61 -39.83 -0.38 -3.91 16 10 C 0.33 4.70 8.11 -154.36 -1.25 3.45 16 11 N -0.65 -8.94 5.46 -15.50 -0.08 -9.02 16 12 C 0.71 11.46 8.53 -86.92 -0.74 10.72 16 13 O -0.57 -10.45 13.47 5.29 0.07 -10.38 16 14 N -0.72 -11.59 5.53 -66.42 -0.37 -11.96 16 15 C 0.13 2.28 6.15 -5.20 -0.03 2.25 16 16 C 0.43 9.57 7.85 -10.99 -0.09 9.48 16 17 O -0.60 -14.99 15.24 5.55 0.08 -14.90 16 18 N -0.55 -13.33 5.29 -10.97 -0.06 -13.39 16 19 C -0.31 -8.19 9.68 -14.93 -0.14 -8.34 16 20 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 22 N -0.89 -23.59 13.05 55.50 0.72 -22.87 16 23 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 N -0.33 -4.48 12.59 31.44 0.40 -4.09 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.45 7.82 -51.93 -0.41 0.04 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.31 7.15 -51.93 -0.37 -0.06 16 36 H 0.17 1.14 7.25 -52.49 -0.38 0.76 16 37 H 0.18 2.63 5.91 -52.49 -0.31 2.32 16 38 H 0.41 4.68 8.84 -40.82 -0.36 4.32 16 39 H 0.41 6.45 7.45 -40.82 -0.30 6.15 16 40 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.40 9.24 7.90 -40.82 -0.32 8.92 16 43 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -32.71 371.36 -6.50 -39.22 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -5.77 Total: 16.84 kcal Atomic # 6 Polarization: 18.58 SS G_CDS: -1.52 Total: 17.06 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: 0.42 Total: -65.50 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.20 Total: -28.55 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.71 -6.50 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588282525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.516 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds