Wall clock time and date at job start Fri Apr 10 2020 18:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99776 * 2 1 4 4 C 1.53002 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46751 * 54.99725 * 4 3 2 6 6 C 1.53001 * 109.47172 * 295.00321 * 4 3 2 7 7 N 1.46499 * 109.47195 * 175.00039 * 4 3 2 8 8 C 1.34958 * 125.97492 * 84.99738 * 7 4 3 9 9 C 1.35245 * 107.85922 * 179.97438 * 8 7 4 10 10 C 1.40403 * 107.86382 * 0.02562 * 9 8 7 11 11 N 1.40201 * 125.96925 * 179.97438 * 10 9 8 12 12 C 1.34779 * 120.00212 * 359.97438 * 11 10 9 13 13 O 1.21587 * 119.99920 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99975 * 180.02562 * 12 11 10 15 15 C 1.46492 * 119.99900 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47159 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99790 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00177 * 179.97438 * 16 15 14 19 19 C 1.37101 * 120.00475 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99357 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00404 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00047 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00049 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.46978 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47149 * 119.99903 * 23 21 19 26 26 H 1.48499 * 109.46959 * 239.99578 * 23 21 19 27 27 N 1.31205 * 108.05774 * 359.97438 * 10 9 8 28 28 H 1.08994 * 109.47392 * 300.00106 * 1 2 3 29 29 H 1.09000 * 109.46906 * 60.00648 * 1 2 3 30 30 H 1.09007 * 109.47198 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47091 * 59.99925 * 3 2 1 32 32 H 1.08996 * 109.46896 * 299.99491 * 3 2 1 33 33 H 1.08995 * 109.47615 * 59.99723 * 6 4 3 34 34 H 1.09001 * 109.47114 * 180.02562 * 6 4 3 35 35 H 1.09004 * 109.47121 * 299.99815 * 6 4 3 36 36 H 1.07999 * 126.07233 * 0.02562 * 8 7 4 37 37 H 1.07998 * 126.07039 * 179.73402 * 9 8 7 38 38 H 0.97006 * 119.99497 * 180.02562 * 11 10 9 39 39 H 0.97006 * 119.99739 * 0.02562 * 14 12 11 40 40 H 1.09004 * 109.47086 * 299.99876 * 15 14 12 41 41 H 1.09001 * 109.47416 * 60.00000 * 15 14 12 42 42 H 0.97002 * 120.00085 * 0.02562 * 18 16 15 43 43 H 0.97004 * 120.00196 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5682 -0.8409 6 6 3.9952 0.5369 1.3083 7 7 4.1309 2.5178 -0.1197 8 6 4.3732 3.3725 0.8962 9 6 4.9270 4.4906 0.3744 10 6 5.0271 4.3137 -1.0148 11 7 5.5475 5.2418 -1.9278 12 6 6.0087 6.4306 -1.4913 13 8 5.9739 6.6980 -0.3057 14 7 6.5084 7.3230 -2.3690 15 6 7.0103 8.6149 -1.8946 16 6 7.5102 9.4205 -3.0659 17 8 7.4534 8.9605 -4.1867 18 7 8.0205 10.6521 -2.8680 19 6 8.4749 11.3853 -3.9337 20 1 8.4235 10.9760 -4.9318 21 6 9.0014 12.6548 -3.7296 22 7 9.0635 13.1530 -2.5153 23 14 9.6199 13.6540 -5.1818 24 1 9.4393 12.8737 -6.4323 25 1 8.8519 14.9216 -5.2734 26 1 11.0607 13.9606 -4.9939 27 7 4.5486 3.1280 -1.3093 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.5522 -0.4549 1.3979 34 1 5.0818 0.4513 1.3089 35 1 3.6792 1.1533 2.1499 36 1 4.1630 3.1949 1.9405 37 1 5.2332 5.3662 0.9275 38 1 5.5748 5.0285 -2.8737 39 1 6.5358 7.1097 -3.3150 40 1 6.2057 9.1568 -1.3973 41 1 7.8270 8.4514 -1.1914 42 1 8.0663 11.0199 -1.9716 43 1 9.4314 14.0391 -2.3727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588282525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:05 Heat of formation + Delta-G solvation = -44.646189 kcal Electronic energy + Delta-G solvation = -26174.186620 eV Core-core repulsion = 22063.171201 eV Total energy + Delta-G solvation = -4111.015420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.49354 -41.19386 -40.03979 -39.11963 -36.61786 -36.19512 -35.40277 -34.86198 -33.35182 -31.13678 -30.32453 -28.96925 -28.36729 -26.62095 -26.37205 -23.79573 -23.24847 -21.57335 -21.26610 -21.11657 -20.05404 -19.33417 -18.46065 -17.95855 -17.39827 -17.18860 -17.00088 -16.93979 -16.50766 -16.41999 -16.08362 -15.86771 -15.66922 -15.21549 -15.14657 -14.62709 -14.37646 -13.98265 -13.88323 -13.79712 -13.54146 -13.53486 -13.16422 -12.91116 -12.62267 -12.42714 -12.38513 -12.25356 -12.10414 -11.80344 -11.73706 -11.56363 -11.25637 -10.75826 -10.54420 -10.32075 -10.07327 -9.88045 -9.22418 -8.49592 -5.99463 0.77244 0.87430 1.36409 1.44457 1.57330 1.58077 1.69521 1.92502 2.29261 2.29473 2.82129 2.99513 3.17968 3.21520 3.47563 3.79924 3.90898 4.04491 4.14938 4.22077 4.37325 4.43936 4.47216 4.48437 4.54238 4.56270 4.61181 4.78947 4.82787 4.84790 4.92810 5.05184 5.21656 5.33311 5.40800 5.64249 5.81534 5.94035 6.00505 6.14633 6.49542 6.55225 6.94797 7.05616 7.31923 7.46804 7.96720 8.67406 Molecular weight = 325.16amu Principal moments of inertia in cm(-1) A = 0.042481 B = 0.001684 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.960563 B =16622.129118 C =16887.990765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.057 3.943 4 C 0.164 3.836 5 H 0.101 0.899 6 C -0.152 4.152 7 N -0.361 5.361 8 C 0.086 3.914 9 C -0.293 4.293 10 C 0.306 3.694 11 N -0.641 5.641 12 C 0.718 3.282 13 O -0.594 6.594 14 N -0.714 5.714 15 C 0.142 3.858 16 C 0.433 3.567 17 O -0.625 6.625 18 N -0.558 5.558 19 C -0.337 4.337 20 H 0.086 0.914 21 C -0.009 4.009 22 N -0.915 5.915 23 Si 0.996 3.004 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.272 1.272 27 N -0.350 5.350 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.217 0.783 37 H 0.160 0.840 38 H 0.422 0.578 39 H 0.413 0.587 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.400 0.600 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.273 -24.213 10.373 29.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.021 4.021 4 C 0.062 3.938 5 H 0.119 0.881 6 C -0.210 4.210 7 N -0.146 5.146 8 C -0.060 4.060 9 C -0.323 4.323 10 C 0.049 3.951 11 N -0.292 5.292 12 C 0.417 3.583 13 O -0.472 6.472 14 N -0.371 5.371 15 C 0.014 3.986 16 C 0.220 3.780 17 O -0.513 6.513 18 N -0.194 5.194 19 C -0.466 4.466 20 H 0.104 0.896 21 C -0.210 4.210 22 N -0.555 5.555 23 Si 0.819 3.181 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.197 1.197 27 N -0.180 5.180 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.233 0.767 37 H 0.177 0.823 38 H 0.259 0.741 39 H 0.251 0.749 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.234 0.766 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.426 -25.121 9.839 30.594 hybrid contribution 0.409 1.624 -0.736 1.829 sum -14.017 -23.497 9.103 28.835 Atomic orbital electron populations 1.22967 0.78914 1.04244 1.00853 1.87777 1.21714 1.26694 1.95619 1.22764 0.92378 0.85497 1.01423 1.21148 0.91471 0.78376 1.02774 0.88079 1.22139 1.02443 1.02486 0.93970 1.48352 1.48712 1.14495 1.03088 1.23019 0.97695 0.88733 0.96569 1.21907 1.14950 1.03029 0.92463 1.19058 0.96584 0.89194 0.90217 1.41432 1.63484 1.13748 1.10550 1.15523 0.78235 0.79699 0.84825 1.90833 1.62737 1.78299 1.15364 1.44605 1.65473 1.15927 1.11133 1.20676 1.00719 0.82979 0.94182 1.20416 0.83797 0.83403 0.90372 1.90481 1.62835 1.71648 1.26320 1.41815 1.53357 1.13697 1.10515 1.19771 1.39131 0.98163 0.89563 0.89611 1.26090 0.96779 0.97664 1.00473 1.69679 1.45244 1.18825 1.21741 0.84825 0.78050 0.77698 0.77482 1.19534 1.19693 1.19698 1.77290 1.25955 1.07888 1.06877 0.92706 0.93903 0.87778 0.91144 0.93920 0.88335 0.91438 0.89929 0.76680 0.82304 0.74065 0.74931 0.88289 0.88304 0.76585 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.40 -5.29 10.24 -148.98 -1.53 -6.81 16 3 C 0.06 0.76 5.64 71.98 0.41 1.16 16 4 C 0.16 2.32 3.63 44.99 0.16 2.48 16 5 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 6 C -0.15 -1.30 8.73 71.98 0.63 -0.67 16 7 N -0.36 -7.25 3.52 -327.53 -1.15 -8.40 16 8 C 0.09 1.59 10.58 83.52 0.88 2.48 16 9 C -0.29 -7.81 9.61 22.11 0.21 -7.60 16 10 C 0.31 8.75 8.11 133.31 1.08 9.83 16 11 N -0.64 -17.67 5.46 -321.23 -1.75 -19.42 16 12 C 0.72 22.94 8.53 179.05 1.53 24.46 16 13 O -0.59 -21.63 13.47 -3.99 -0.05 -21.69 16 14 N -0.71 -22.95 5.53 -482.31 -2.67 -25.62 16 15 C 0.14 5.00 6.15 85.63 0.53 5.53 16 16 C 0.43 19.52 7.85 87.66 0.69 20.21 16 17 O -0.62 -31.77 15.24 -3.06 -0.05 -31.81 16 18 N -0.56 -27.51 5.29 -307.00 -1.62 -29.14 16 19 C -0.34 -18.39 9.68 84.04 0.81 -17.57 16 20 H 0.09 4.95 7.16 -2.91 -0.02 4.92 16 21 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 22 N -0.91 -48.08 13.05 21.66 0.28 -47.79 16 23 Si 1.00 41.54 29.55 68.60 2.03 43.57 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 N -0.35 -9.39 12.59 -54.43 -0.69 -10.07 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 0.71 7.82 -2.39 -0.02 0.69 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.44 7.15 -2.39 -0.02 0.43 16 36 H 0.22 1.98 7.25 -2.91 -0.02 1.95 16 37 H 0.16 4.79 5.91 -2.91 -0.02 4.77 16 38 H 0.42 9.62 8.84 -92.70 -0.82 8.80 16 39 H 0.41 12.98 7.45 -92.70 -0.69 12.29 16 40 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.40 18.85 7.90 -92.71 -0.73 18.11 16 43 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -70.55 371.36 0.29 -70.26 By element: Atomic # 1 Polarization: 46.32 SS G_CDS: -1.16 Total: 45.16 kcal Atomic # 6 Polarization: 33.12 SS G_CDS: 8.65 Total: 41.76 kcal Atomic # 7 Polarization: -132.84 SS G_CDS: -7.60 Total: -140.44 kcal Atomic # 8 Polarization: -58.69 SS G_CDS: -1.63 Total: -60.31 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -70.55 0.29 -70.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588282525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.616 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds