Wall clock time and date at job start Fri Apr 10 2020 18:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48506 * 109.47036 * 269.99821 * 3 2 1 5 5 H 1.48502 * 109.47092 * 29.99365 * 3 2 1 6 6 H 1.48489 * 109.47511 * 149.99940 * 3 2 1 7 7 C 1.37869 * 120.00459 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00322 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99907 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.64025 * 56.85978 * 9 7 2 11 11 C 1.55155 * 110.72055 * 180.02562 * 9 7 2 12 12 C 1.54906 * 101.58202 * 154.04440 * 11 9 7 13 13 N 1.47426 * 104.82959 * 322.98796 * 12 11 9 14 14 C 1.34784 * 125.64631 * 204.09278 * 13 12 11 15 15 O 1.21588 * 119.99858 * 180.02562 * 14 13 12 16 16 N 1.34773 * 119.99935 * 359.75267 * 14 13 12 17 17 C 1.46496 * 119.99973 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47316 * 179.97438 * 17 16 14 19 19 O 1.21280 * 119.99644 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99967 * 179.97438 * 18 17 16 21 21 C 1.46929 * 120.63092 * 359.72440 * 20 18 17 22 22 C 1.53622 * 108.54274 * 126.36350 * 21 20 18 23 23 C 1.53051 * 109.24027 * 54.85700 * 22 21 20 24 24 C 1.53042 * 109.53632 * 298.50916 * 23 22 21 25 25 C 1.46931 * 120.63031 * 179.97438 * 20 18 17 26 26 C 1.47018 * 108.70612 * 24.35650 * 13 12 11 27 27 H 0.97003 * 120.00323 * 0.02562 * 1 2 3 28 28 H 0.96700 * 113.99531 * 303.14127 * 10 9 7 29 29 H 1.08996 * 111.00485 * 35.96668 * 11 9 7 30 30 H 1.09002 * 111.03305 * 272.13361 * 11 9 7 31 31 H 1.09004 * 110.36614 * 204.15475 * 12 11 9 32 32 H 1.08999 * 110.37158 * 81.82525 * 12 11 9 33 33 H 0.97004 * 120.00018 * 359.97438 * 16 14 13 34 34 H 1.09007 * 109.47081 * 299.99672 * 17 16 14 35 35 H 1.08997 * 109.47795 * 59.99548 * 17 16 14 36 36 H 1.08996 * 109.58298 * 246.19741 * 21 20 18 37 37 H 1.09000 * 109.58394 * 6.62520 * 21 20 18 38 38 H 1.08997 * 109.63861 * 294.86791 * 22 21 20 39 39 H 1.08996 * 109.43201 * 174.72135 * 22 21 20 40 40 H 1.08999 * 109.45434 * 178.48896 * 23 22 21 41 41 H 1.09001 * 109.44613 * 58.52105 * 23 22 21 42 42 H 1.09000 * 109.49535 * 301.41409 * 24 23 22 43 43 H 1.09002 * 109.52126 * 181.33356 * 24 23 22 44 44 H 1.09004 * 109.58244 * 353.37434 * 25 20 18 45 45 H 1.09001 * 109.58574 * 113.65717 * 25 20 18 46 46 H 1.09004 * 109.88164 * 118.12840 * 26 13 12 47 47 H 1.08996 * 109.88548 * 239.29371 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 0.3666 -2.5701 -1.1195 11 6 2.2335 -3.7001 0.0018 12 6 1.3738 -4.8044 0.6658 13 7 0.5895 -4.1024 1.6981 14 6 0.0637 -4.6661 2.8037 15 8 -0.5686 -3.9876 3.5900 16 7 0.2341 -5.9829 3.0349 17 6 -0.3379 -6.5957 4.2364 18 6 -0.0068 -8.0657 4.2568 19 8 0.6426 -8.5536 3.3561 20 7 -0.4324 -8.8382 5.2759 21 6 -1.2148 -8.2605 6.3772 22 6 -2.5104 -9.0709 6.5336 23 6 -2.1611 -10.5494 6.7193 24 6 -1.4207 -11.0598 5.4810 25 6 -0.1180 -10.2731 5.3095 26 6 0.4705 -2.6871 1.3186 27 1 -0.4851 0.8400 -0.0004 28 1 -0.2680 -1.8420 -1.1662 29 1 3.1179 -3.4808 0.6000 30 1 2.5113 -3.9794 -1.0145 31 1 2.0133 -5.5593 1.1234 32 1 0.7109 -5.2620 -0.0684 33 1 0.7349 -6.5250 2.4054 34 1 0.0792 -6.1166 5.1223 35 1 -1.4203 -6.4675 4.2296 36 1 -0.6370 -8.3081 7.3001 37 1 -1.4568 -7.2226 6.1482 38 1 -3.1268 -8.9519 5.6426 39 1 -3.0582 -8.7142 7.4059 40 1 -3.0769 -11.1242 6.8576 41 1 -1.5242 -10.6645 7.5964 42 1 -2.0474 -10.9220 4.5999 43 1 -1.1930 -12.1187 5.6035 44 1 0.3638 -10.5635 4.3759 45 1 0.5496 -10.4814 6.1455 46 1 -0.5784 -2.4300 1.1703 47 1 0.9024 -2.0572 2.0962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591911094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:12 Heat of formation + Delta-G solvation = -136.188898 kcal Electronic energy + Delta-G solvation = -28245.633039 eV Core-core repulsion = 24234.188374 eV Total energy + Delta-G solvation = -4011.444666 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.68416 -40.96244 -39.18626 -38.42955 -36.11235 -35.55004 -34.16205 -34.01653 -32.22997 -31.74472 -29.79541 -28.94021 -26.86052 -25.89482 -24.33608 -23.94232 -21.96822 -21.43712 -21.18423 -20.16621 -19.32055 -19.01629 -18.01724 -17.55878 -17.24424 -17.01541 -16.62264 -16.47428 -16.11222 -15.54351 -15.37398 -15.22065 -14.90423 -14.76744 -14.75190 -14.66822 -14.28156 -14.03503 -13.85591 -13.53894 -13.47866 -13.27084 -13.25860 -12.85026 -12.55971 -12.31067 -12.27790 -12.22243 -12.10076 -11.89155 -11.65708 -11.49732 -11.40800 -11.20252 -11.01248 -10.63116 -10.40180 -10.29998 -9.75146 -9.46602 -8.26141 -6.42022 1.34893 1.37192 1.43951 1.44866 1.54466 1.98705 2.05981 2.38783 2.99459 3.00092 3.27298 3.79737 3.82379 3.97501 3.98308 4.06174 4.11835 4.14989 4.23576 4.25743 4.35613 4.36031 4.49351 4.57611 4.61000 4.70753 4.82095 4.90371 4.91993 5.02175 5.03730 5.11624 5.15164 5.20127 5.22078 5.27304 5.35951 5.44882 5.46885 5.51097 5.75966 5.98153 6.09850 6.19583 6.64352 6.89064 6.96358 7.29830 7.39463 7.45546 8.80358 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.029926 B = 0.002371 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.406970 B =11806.287411 C =12242.796150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.233 3.767 10 O -0.590 6.590 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.633 5.633 14 C 0.717 3.283 15 O -0.634 6.634 16 N -0.728 5.728 17 C 0.122 3.878 18 C 0.515 3.485 19 O -0.572 6.572 20 N -0.602 5.602 21 C 0.094 3.906 22 C -0.135 4.135 23 C -0.118 4.118 24 C -0.131 4.131 25 C 0.107 3.893 26 C 0.138 3.862 27 H 0.272 0.728 28 H 0.379 0.621 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.410 0.590 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.030 0.970 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 -21.498 14.213 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.193 3.807 10 O -0.399 6.399 11 C -0.148 4.148 12 C -0.015 4.015 13 N -0.369 5.369 14 C 0.418 3.582 15 O -0.517 6.517 16 N -0.388 5.388 17 C -0.006 4.006 18 C 0.303 3.697 19 O -0.452 6.452 20 N -0.335 5.335 21 C -0.028 4.028 22 C -0.173 4.173 23 C -0.156 4.156 24 C -0.169 4.169 25 C -0.015 4.015 26 C 0.014 3.986 27 H 0.081 0.919 28 H 0.230 0.770 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.248 0.752 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.048 0.952 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.533 -21.760 14.275 26.147 hybrid contribution -0.069 1.506 -0.294 1.536 sum -2.602 -20.254 13.981 24.748 Atomic orbital electron populations 1.69683 1.07126 1.28595 1.50292 1.25836 0.95836 1.02880 0.93038 0.85432 0.78605 0.78516 0.78347 1.19785 1.21000 1.19222 1.21834 0.93997 0.91229 1.52364 0.91328 1.19716 0.86358 0.93528 0.81101 1.86066 1.51489 1.53044 1.49329 1.22728 0.97128 0.93437 1.01505 1.22381 0.93838 0.95442 0.89875 1.47848 1.55822 1.11326 1.21953 1.15508 0.79709 0.81967 0.80988 1.90845 1.48339 1.63350 1.49132 1.44684 1.60245 1.06855 1.27006 1.21012 1.00798 0.89668 0.89085 1.20498 0.78941 0.88581 0.81708 1.90671 1.41497 1.75134 1.37854 1.48129 1.53403 1.09675 1.22316 1.22228 0.92665 0.98310 0.89568 1.22009 0.96289 0.95858 1.03139 1.21535 1.00997 0.95376 0.97662 1.21888 0.95695 1.00358 0.98931 1.21751 0.98075 0.78430 1.03242 1.22446 0.99094 0.78332 0.98680 0.91898 0.77049 0.89706 0.89140 0.88827 0.91340 0.75178 0.87604 0.87987 0.88757 0.89062 0.92466 0.88605 0.90711 0.90446 0.92934 0.89034 0.90848 0.89585 0.95199 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.25 10.97 21.44 0.24 -50.02 16 2 C 0.02 1.30 5.28 84.65 0.45 1.75 16 3 Si 0.97 42.27 29.54 68.60 2.03 44.30 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.56 -29.49 8.12 25.60 0.21 -29.28 16 8 H 0.07 3.53 7.76 -2.91 -0.02 3.50 16 9 C 0.23 11.59 0.86 -10.35 -0.01 11.58 16 10 O -0.59 -30.76 13.07 -148.98 -1.95 -32.71 16 11 C -0.11 -4.37 6.23 31.98 0.20 -4.17 16 12 C 0.11 3.81 6.56 86.85 0.57 4.38 16 13 N -0.63 -27.21 3.33 -829.73 -2.76 -29.96 16 14 C 0.72 29.73 8.49 179.05 1.52 31.25 16 15 O -0.63 -30.56 16.67 -3.99 -0.07 -30.63 16 16 N -0.73 -23.34 5.49 -482.30 -2.65 -25.98 16 17 C 0.12 3.03 4.50 85.63 0.39 3.42 16 18 C 0.51 12.05 7.77 87.66 0.68 12.73 16 19 O -0.57 -17.09 15.08 -3.03 -0.05 -17.13 16 20 N -0.60 -9.95 2.97 -818.13 -2.43 -12.37 16 21 C 0.09 1.00 6.37 86.51 0.55 1.55 16 22 C -0.13 -1.16 6.10 30.82 0.19 -0.97 16 23 C -0.12 -0.86 5.88 30.63 0.18 -0.68 16 24 C -0.13 -1.32 6.08 30.66 0.19 -1.14 16 25 C 0.11 1.49 6.43 86.35 0.55 2.04 16 26 C 0.14 7.05 5.54 86.73 0.48 7.53 16 27 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.38 20.64 6.98 -74.06 -0.52 20.12 16 29 H 0.08 3.20 8.03 -2.39 -0.02 3.19 16 30 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 31 H 0.09 2.70 7.31 -2.38 -0.02 2.69 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.41 12.51 5.92 -92.71 -0.55 11.96 16 34 H 0.11 2.42 7.93 -2.38 -0.02 2.40 16 35 H 0.10 2.40 7.70 -2.39 -0.02 2.39 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 1.00 5.93 -2.39 -0.01 0.98 16 38 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 1.35 7.01 -2.39 -0.02 1.33 16 45 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.03 1.68 8.07 -2.38 -0.02 1.66 16 47 H 0.04 1.98 7.82 -2.39 -0.02 1.96 16 Total: -1.00 -70.07 372.82 -1.56 -71.64 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: -0.08 Total: 42.88 kcal Atomic # 6 Polarization: 33.85 SS G_CDS: 6.14 Total: 40.00 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -7.60 Total: -118.34 kcal Atomic # 8 Polarization: -78.41 SS G_CDS: -2.06 Total: -80.47 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -70.07 -1.56 -71.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591911094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.554 kcal (2) G-P(sol) polarization free energy of solvation -70.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds