Wall clock time and date at job start Fri Apr 10 2020 18:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99600 * 2 1 4 4 H 1.48498 * 109.47349 * 264.77204 * 3 2 1 5 5 H 1.48509 * 109.47374 * 24.77349 * 3 2 1 6 6 H 1.48496 * 109.47253 * 144.77041 * 3 2 1 7 7 C 1.37868 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00132 * 6.05180 * 7 2 1 9 9 C 1.50705 * 119.99964 * 186.04711 * 7 2 1 10 10 O 1.42901 * 110.35101 * 61.58218 * 9 7 2 11 11 C 1.54599 * 110.30801 * 183.71926 * 9 7 2 12 12 C 1.54937 * 102.91796 * 140.87806 * 11 9 7 13 13 N 1.48535 * 103.22562 * 322.58465 * 12 11 9 14 14 C 1.46901 * 110.99756 * 159.72560 * 13 12 11 15 15 C 1.50701 * 109.47088 * 52.60210 * 14 13 12 16 16 O 1.21229 * 120.00184 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99476 * 179.72470 * 15 14 13 18 18 C 1.34782 * 119.99622 * 180.27804 * 17 15 14 19 19 O 1.21541 * 120.00217 * 359.97438 * 18 17 15 20 20 N 1.34774 * 119.99964 * 180.02562 * 18 17 15 21 21 C 1.46499 * 120.00008 * 179.97438 * 20 18 17 22 22 C 1.54266 * 110.03222 * 272.16751 * 21 20 18 23 23 C 1.54892 * 104.19304 * 217.10803 * 22 21 20 24 24 C 1.54886 * 102.75212 * 37.94020 * 23 22 21 25 25 C 1.53876 * 110.03232 * 154.99992 * 21 20 18 26 26 C 1.47894 * 105.82150 * 39.20971 * 13 12 11 27 27 H 0.96996 * 120.00772 * 0.02562 * 1 2 3 28 28 H 0.96697 * 114.00100 * 57.85707 * 10 9 7 29 29 H 1.08998 * 110.72405 * 259.23265 * 11 9 7 30 30 H 1.09000 * 110.72194 * 22.34155 * 11 9 7 31 31 H 1.09005 * 110.66517 * 204.15162 * 12 11 9 32 32 H 1.08998 * 110.66958 * 81.02154 * 12 11 9 33 33 H 1.09001 * 109.46763 * 292.60370 * 14 13 12 34 34 H 1.09003 * 109.46905 * 172.60209 * 14 13 12 35 35 H 0.97000 * 120.00644 * 0.27679 * 17 15 14 36 36 H 0.97001 * 119.99724 * 359.97438 * 20 18 17 37 37 H 1.08999 * 110.01809 * 33.61008 * 21 20 18 38 38 H 1.09003 * 110.48862 * 335.77900 * 22 21 20 39 39 H 1.08995 * 110.48473 * 98.42850 * 22 21 20 40 40 H 1.08999 * 110.75378 * 279.62473 * 23 22 21 41 41 H 1.09000 * 110.91374 * 156.33560 * 23 22 21 42 42 H 1.09000 * 110.48759 * 203.37862 * 24 23 22 43 43 H 1.09003 * 110.48296 * 80.73999 * 24 23 22 44 44 H 1.09002 * 110.03463 * 238.57181 * 25 21 20 45 45 H 1.09003 * 110.02984 * 359.95339 * 25 21 20 46 46 H 1.08998 * 109.91829 * 94.01833 * 26 13 12 47 47 H 1.09001 * 109.91864 * 215.11720 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6070 1.9827 -1.3942 5 1 1.3956 2.6821 0.5867 6 1 3.4870 1.4748 0.8076 7 6 2.0046 -1.1939 0.0005 8 1 1.4692 -2.1267 -0.0977 9 6 3.5053 -1.1974 0.1380 10 8 3.8912 -0.6234 1.3885 11 6 4.0518 -2.6386 0.0179 12 6 5.3516 -2.4488 -0.8037 13 7 4.9870 -1.3867 -1.7760 14 6 6.1867 -0.7330 -2.3159 15 6 7.1287 -1.7783 -2.8553 16 8 6.8300 -2.9518 -2.7963 17 7 8.3005 -1.4081 -3.4088 18 6 9.1405 -2.3427 -3.8963 19 8 8.8415 -3.5192 -3.8364 20 7 10.3125 -1.9726 -4.4494 21 6 11.2258 -2.9884 -4.9787 22 6 12.1616 -3.4918 -3.8605 23 6 13.5202 -3.7100 -4.5718 24 6 13.5802 -2.5235 -5.5656 25 6 12.1277 -2.3728 -6.0629 26 6 4.1506 -0.4242 -1.0269 27 1 -0.4851 0.8399 -0.0004 28 1 3.5144 -1.0697 2.1591 29 1 4.2745 -3.0500 1.0024 30 1 3.3455 -3.2758 -0.5142 31 1 5.6171 -3.3702 -1.3221 32 1 6.1680 -2.1186 -0.1614 33 1 6.6821 -0.1715 -1.5238 34 1 5.9000 -0.0534 -3.1185 35 1 8.5393 -0.4692 -3.4564 36 1 10.5513 -1.0337 -4.4969 37 1 10.6577 -3.8208 -5.3941 38 1 12.2579 -2.7406 -3.0765 39 1 11.7921 -4.4304 -3.4476 40 1 13.5290 -4.6609 -5.1045 41 1 14.3444 -3.6600 -3.8602 42 1 14.2459 -2.7555 -6.3969 43 1 13.9055 -1.6160 -5.0570 44 1 11.9979 -2.9069 -7.0042 45 1 11.8853 -1.3184 -6.1957 46 1 4.7712 0.3831 -0.6380 47 1 3.3781 -0.0171 -1.6793 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:26 Heat of formation + Delta-G solvation = -91.554125 kcal Electronic energy + Delta-G solvation = -28152.607284 eV Core-core repulsion = 24143.098127 eV Total energy + Delta-G solvation = -4009.509157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30477 -39.50554 -38.47859 -37.43794 -34.86363 -34.70509 -33.73659 -32.32630 -30.85095 -29.19091 -28.33509 -28.20385 -26.74490 -24.04513 -22.66275 -21.19022 -20.96071 -20.79410 -20.43182 -19.61440 -18.99199 -17.18570 -17.05462 -16.40840 -16.22321 -15.83544 -15.42508 -15.40391 -14.87343 -14.70197 -14.56497 -14.10825 -13.86710 -13.82444 -13.46705 -12.98775 -12.77167 -12.55269 -12.44429 -12.00304 -11.87114 -11.84361 -11.64077 -11.52856 -11.49961 -11.23632 -11.08545 -11.01127 -10.87737 -10.67545 -10.38245 -10.16700 -10.10162 -9.96152 -9.43673 -9.36682 -8.96221 -8.64809 -8.33192 -7.95242 -6.13616 -4.21839 2.08244 2.14602 3.17806 3.29441 3.40586 3.59320 3.62887 4.08013 4.17695 4.40543 4.42884 4.46550 4.54839 4.93486 4.99140 5.05283 5.08547 5.15808 5.19184 5.21866 5.29632 5.32327 5.44446 5.45151 5.60050 5.64040 5.72711 5.79233 5.84957 5.87340 5.95150 6.02901 6.09338 6.18980 6.33805 6.36721 6.61219 6.80479 6.97282 7.10830 7.27288 7.39881 7.50253 7.62363 8.06359 8.22921 8.29978 8.85474 9.00810 9.50357 10.97417 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.032605 B = 0.002336 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.561269 B =11982.080871 C =12280.492261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.083 3.917 3 Si 0.870 3.130 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.231 1.231 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.211 3.789 10 O -0.583 6.583 11 C -0.135 4.135 12 C 0.032 3.968 13 N -0.495 5.495 14 C 0.028 3.972 15 C 0.515 3.485 16 O -0.444 6.444 17 N -0.694 5.694 18 C 0.693 3.307 19 O -0.529 6.529 20 N -0.736 5.736 21 C 0.156 3.844 22 C -0.137 4.137 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.131 4.131 26 C 0.044 3.956 27 H 0.265 0.735 28 H 0.365 0.635 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.030 0.970 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.407 0.593 36 H 0.396 0.604 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.037 0.963 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.818 0.736 -10.197 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.121 4.121 3 Si 0.698 3.302 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.154 1.154 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.172 3.828 10 O -0.389 6.389 11 C -0.173 4.173 12 C -0.095 4.095 13 N -0.220 5.220 14 C -0.104 4.104 15 C 0.301 3.699 16 O -0.309 6.309 17 N -0.361 5.361 18 C 0.393 3.607 19 O -0.400 6.400 20 N -0.393 5.393 21 C 0.050 3.950 22 C -0.176 4.176 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.169 4.169 26 C -0.083 4.083 27 H 0.075 0.925 28 H 0.212 0.788 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.242 0.758 36 H 0.231 0.769 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.056 0.944 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 27.190 -0.839 -10.935 29.318 hybrid contribution 0.713 2.110 0.821 2.374 sum 27.903 1.271 -10.113 29.706 Atomic orbital electron populations 1.69942 1.06579 1.27353 1.48766 1.25014 0.94607 0.99557 0.92924 0.87114 0.82007 0.82612 0.78505 1.20978 1.22547 1.15432 1.21365 0.89038 0.95035 1.52493 0.90412 1.19823 0.94055 0.87745 0.81224 1.86436 1.75467 1.60710 1.16313 1.23078 0.95992 0.99450 0.98777 1.23476 0.96804 0.96511 0.92740 1.64835 1.13015 1.10488 1.33678 1.22305 0.91808 0.94938 1.01315 1.20970 0.80314 0.91127 0.77496 1.90785 1.72112 1.18764 1.49287 1.44281 1.20420 1.11478 1.59971 1.16191 0.80331 0.85379 0.78755 1.91073 1.74902 1.15377 1.58677 1.45488 1.18767 1.10354 1.64699 1.21586 0.89478 0.90640 0.93251 1.22825 0.94761 1.02078 0.97908 1.22484 0.97089 0.98547 0.98168 1.22360 0.95967 0.98803 0.99053 1.22449 0.94787 1.01443 0.98262 1.23350 0.96062 0.93586 0.95297 0.92542 0.78750 0.92116 0.90358 0.88209 0.95175 0.91486 0.87370 0.75821 0.76934 0.88786 0.91138 0.90836 0.91161 0.91280 0.91318 0.91456 0.90494 0.90982 0.94432 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.96 55.43 0.77 -26.13 16 2 C 0.08 2.37 5.39 -17.82 -0.10 2.27 16 3 Si 0.87 21.38 23.85 -169.99 -4.05 17.32 16 4 H -0.28 -6.71 6.94 56.52 0.39 -6.31 16 5 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.23 -5.55 5.42 56.52 0.31 -5.25 16 7 C -0.54 -15.01 8.67 -34.44 -0.30 -15.31 16 8 H 0.08 2.35 7.82 -52.48 -0.41 1.94 16 9 C 0.21 4.96 0.84 -90.41 -0.08 4.88 16 10 O -0.58 -13.15 10.44 -35.23 -0.37 -13.52 16 11 C -0.13 -2.84 6.34 -24.87 -0.16 -3.00 16 12 C 0.03 0.62 5.30 -1.90 -0.01 0.61 16 13 N -0.49 -9.70 5.26 -231.89 -1.22 -10.92 16 14 C 0.03 0.41 5.52 -4.97 -0.03 0.38 16 15 C 0.52 7.71 7.48 -10.98 -0.08 7.63 16 16 O -0.44 -8.81 11.92 -18.20 -0.22 -9.03 16 17 N -0.69 -7.31 5.24 -15.78 -0.08 -7.39 16 18 C 0.69 8.57 8.50 -86.92 -0.74 7.83 16 19 O -0.53 -9.46 14.40 -18.48 -0.27 -9.73 16 20 N -0.74 -5.67 5.04 -57.59 -0.29 -5.96 16 21 C 0.16 1.18 3.25 -66.81 -0.22 0.97 16 22 C -0.14 -1.02 6.53 -25.07 -0.16 -1.19 16 23 C -0.12 -0.67 6.91 -24.74 -0.17 -0.85 16 24 C -0.12 -0.54 6.83 -25.08 -0.17 -0.71 16 25 C -0.13 -0.64 6.57 -25.61 -0.17 -0.81 16 26 C 0.04 0.97 4.11 -2.76 -0.01 0.95 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.37 7.25 9.07 45.56 0.41 7.66 16 29 H 0.06 1.16 8.08 -51.93 -0.42 0.75 16 30 H 0.08 1.74 7.70 -51.93 -0.40 1.34 16 31 H 0.10 2.06 5.97 -51.93 -0.31 1.75 16 32 H 0.03 0.57 8.02 -51.93 -0.42 0.15 16 33 H 0.07 0.85 7.81 -51.93 -0.41 0.44 16 34 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.41 2.24 8.71 -40.82 -0.36 1.89 16 36 H 0.40 1.66 8.33 -40.82 -0.34 1.32 16 37 H 0.09 0.93 7.56 -51.93 -0.39 0.54 16 38 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.27 7.62 -51.93 -0.40 -0.12 16 46 H 0.04 0.79 6.53 -51.93 -0.34 0.45 16 47 H 0.09 2.21 5.80 -51.93 -0.30 1.91 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -37.54 364.19 -9.31 -46.85 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.69 Total: 9.34 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.39 Total: 3.67 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.82 Total: -50.40 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.85 Total: -32.27 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.05 Total: 17.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.54 -9.31 -46.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.700 kcal (2) G-P(sol) polarization free energy of solvation -37.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds