Wall clock time and date at job start Fri Apr 10 2020 18:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99684 * 2 1 4 4 C 1.53001 * 109.46853 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47338 * 185.00025 * 4 3 2 6 6 C 1.52999 * 109.47007 * 305.00293 * 4 3 2 7 7 O 1.42902 * 109.47204 * 55.00182 * 6 4 3 8 8 N 1.46907 * 109.47061 * 65.00018 * 4 3 2 9 9 C 1.46897 * 110.99858 * 155.00062 * 8 4 3 10 10 C 1.52999 * 109.47078 * 180.02562 * 9 8 4 11 11 H 1.09001 * 109.47304 * 305.00167 * 10 9 8 12 12 O 1.42900 * 109.47080 * 65.00171 * 10 9 8 13 13 C 1.53005 * 109.47241 * 184.99834 * 10 9 8 14 14 O 1.42892 * 109.46985 * 175.00242 * 13 10 9 15 15 C 1.35680 * 117.00054 * 180.02562 * 14 13 10 16 16 C 1.39312 * 119.81278 * 359.72406 * 15 14 13 17 17 C 1.36441 * 120.18082 * 179.75841 * 16 15 14 18 18 C 1.40833 * 119.81104 * 0.51581 * 17 16 15 19 19 C 1.41222 * 120.17699 * 179.71924 * 18 17 16 20 20 H 1.07995 * 119.99904 * 24.56856 * 19 18 17 21 21 C 1.39888 * 119.99495 * 204.56804 * 19 18 17 22 22 N 1.30879 * 120.00217 * 17.93473 * 21 19 18 23 23 Si 1.86805 * 119.99765 * 197.92897 * 21 19 18 24 24 H 1.48502 * 109.46611 * 60.00499 * 23 21 19 25 25 H 1.48494 * 109.47117 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47309 * 300.00664 * 23 21 19 27 27 C 1.40829 * 119.64270 * 359.73789 * 18 17 16 28 28 C 1.36438 * 119.81406 * 0.02562 * 27 18 17 29 29 H 1.09001 * 109.47602 * 299.99752 * 1 2 3 30 30 H 1.08998 * 109.47840 * 59.99741 * 1 2 3 31 31 H 1.09004 * 109.47342 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46874 * 60.00587 * 3 2 1 33 33 H 1.09000 * 109.47266 * 300.00095 * 3 2 1 34 34 H 1.09005 * 109.46946 * 174.99980 * 6 4 3 35 35 H 1.09003 * 109.47366 * 294.99682 * 6 4 3 36 36 H 0.96701 * 113.99767 * 180.02562 * 7 6 4 37 37 H 1.00895 * 110.99899 * 278.95340 * 8 4 3 38 38 H 1.09002 * 109.47189 * 300.00267 * 9 8 4 39 39 H 1.09000 * 109.47569 * 60.00123 * 9 8 4 40 40 H 0.96702 * 114.00539 * 59.99602 * 12 10 9 41 41 H 1.09000 * 109.46768 * 294.99775 * 13 10 9 42 42 H 1.08995 * 109.46469 * 55.00063 * 13 10 9 43 43 H 1.07999 * 119.90641 * 0.02562 * 16 15 14 44 44 H 1.08000 * 120.09241 * 180.25351 * 17 16 15 45 45 H 0.97004 * 119.99969 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.09203 * 179.97438 * 27 18 17 47 47 H 1.08002 * 119.90981 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1765 0.0889 6 6 3.9789 0.3194 1.1806 7 8 3.3075 -0.9410 1.1264 8 7 3.9768 0.5628 -1.2562 9 6 5.3585 0.9455 -1.5760 10 6 5.7815 0.2805 -2.8874 11 1 5.6353 -0.7970 -2.8120 12 8 4.9890 0.7948 -3.9595 13 6 7.2581 0.5774 -3.1567 14 8 7.6835 -0.1379 -4.3183 15 6 8.9772 0.0160 -4.6970 16 6 9.8195 0.8481 -3.9629 17 6 11.1231 1.0045 -4.3341 18 6 11.6135 0.3305 -5.4693 19 6 12.9599 0.4914 -5.8639 20 1 13.7050 0.7784 -5.1368 21 6 13.3281 0.2791 -7.1967 22 7 12.4164 0.2798 -8.1356 23 14 15.1213 -0.0052 -7.6362 24 1 15.6185 -1.2131 -6.9298 25 1 15.2463 -0.2022 -9.1027 26 1 15.9247 1.1743 -7.2254 27 6 10.7539 -0.5046 -6.2089 28 6 9.4543 -0.6540 -5.8214 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6885 1.8463 0.8901 33 1 1.6885 1.8464 -0.8900 34 1 5.0560 0.1597 1.1298 35 1 3.7300 0.8238 2.1143 36 1 3.5408 -1.5421 1.8470 37 1 3.8796 -0.4407 -1.2164 38 1 5.4203 2.0286 -1.6818 39 1 6.0206 0.6206 -0.7734 40 1 5.0696 1.7503 -4.0851 41 1 7.3896 1.6470 -3.3203 42 1 7.8537 0.2649 -2.2991 43 1 9.4407 1.3674 -3.0950 44 1 11.7759 1.6467 -3.7616 45 1 12.6718 0.1330 -9.0598 46 1 11.1222 -1.0247 -7.0808 47 1 8.7936 -1.2938 -6.3877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592430738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:33 Heat of formation + Delta-G solvation = -184.761677 kcal Electronic energy + Delta-G solvation = -26997.053350 eV Core-core repulsion = 22951.209659 eV Total energy + Delta-G solvation = -4045.843691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.66851 -39.72930 -38.76043 -37.76734 -37.35920 -35.69096 -35.17556 -32.40137 -31.64260 -30.94959 -29.83613 -27.64320 -26.83175 -26.12616 -25.55239 -23.25700 -22.45704 -22.27815 -21.44134 -19.25151 -18.83112 -18.36320 -17.69931 -17.33206 -17.10627 -17.03079 -16.91861 -16.28957 -16.04505 -15.78277 -15.68302 -15.32458 -15.26873 -14.87170 -14.74174 -14.39422 -14.06847 -13.92416 -13.53724 -13.41484 -13.26705 -13.17444 -12.97328 -12.78426 -12.62825 -12.49061 -12.38166 -12.25132 -11.92579 -11.81774 -11.70381 -11.58610 -11.20827 -10.93544 -10.86499 -10.76910 -10.34667 -9.56346 -9.28260 -8.92449 -8.59201 -6.22542 0.95514 1.02667 1.39918 1.50965 1.55124 2.22898 2.39282 2.73041 3.02872 3.18408 3.51860 3.63009 3.70496 3.88533 3.98344 4.03628 4.08124 4.24894 4.29080 4.33673 4.36531 4.45808 4.47335 4.50324 4.55112 4.63086 4.65151 4.69567 4.81101 4.87325 4.91444 4.96923 5.04722 5.08048 5.21803 5.28430 5.58934 5.64397 5.88424 6.04825 6.05869 6.26355 6.39987 6.48790 6.56852 6.80841 6.90724 6.95158 7.00297 7.10709 8.37262 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.037918 B = 0.001812 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.251789 B =15449.002367 C =15770.607551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.379 6.379 3 C 0.073 3.927 4 C 0.085 3.915 5 H 0.119 0.881 6 C 0.049 3.951 7 O -0.564 6.564 8 N -0.677 5.677 9 C 0.040 3.960 10 C 0.124 3.876 11 H 0.088 0.912 12 O -0.562 6.562 13 C 0.031 3.969 14 O -0.333 6.333 15 C 0.000 4.000 16 C -0.164 4.164 17 C -0.207 4.207 18 C 0.053 3.947 19 C -0.499 4.499 20 H 0.077 0.923 21 C 0.033 3.967 22 N -0.832 5.832 23 Si 0.983 3.017 24 H -0.261 1.261 25 H -0.270 1.270 26 H -0.259 1.259 27 C -0.153 4.153 28 C -0.136 4.136 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.384 0.616 37 H 0.349 0.651 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.383 0.617 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.131 0.869 44 H 0.107 0.893 45 H 0.287 0.713 46 H 0.109 0.891 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.435 3.151 18.611 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.297 6.297 3 C -0.004 4.004 4 C -0.024 4.024 5 H 0.136 0.864 6 C -0.031 4.031 7 O -0.369 6.369 8 N -0.308 5.308 9 C -0.089 4.089 10 C 0.064 3.936 11 H 0.106 0.894 12 O -0.368 6.368 13 C -0.045 4.045 14 O -0.249 6.249 15 C -0.044 4.044 16 C -0.183 4.183 17 C -0.226 4.226 18 C 0.051 3.949 19 C -0.529 4.529 20 H 0.096 0.904 21 C -0.181 4.181 22 N -0.459 5.459 23 Si 0.803 3.197 24 H -0.186 1.186 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.173 4.173 28 C -0.155 4.155 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.231 0.769 37 H 0.168 0.832 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.232 0.768 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.149 0.851 44 H 0.125 0.875 45 H 0.098 0.902 46 H 0.127 0.873 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.224 2.999 17.279 25.292 hybrid contribution 1.593 0.024 0.812 1.788 sum -16.631 3.023 18.091 24.759 Atomic orbital electron populations 1.22776 0.81579 1.02789 0.99800 1.88115 1.19139 1.27239 1.95201 1.22528 0.92677 0.85299 0.99916 1.21962 0.94601 0.98528 0.87350 0.86350 1.22787 0.95212 0.86264 0.98822 1.86698 1.69504 1.26831 1.53911 1.60356 1.21127 1.16085 1.33259 1.22516 0.89788 1.01453 0.95190 1.21767 0.85916 0.99150 0.86794 0.89376 1.86613 1.68464 1.28469 1.53251 1.23502 0.96645 0.96775 0.87620 1.85887 1.24718 1.68270 1.46009 1.18700 0.83680 1.03768 0.98236 1.20705 0.94562 1.01825 1.01208 1.20807 0.95476 1.04609 1.01741 1.17968 0.94167 0.90601 0.92145 1.19690 0.94295 1.43855 0.95061 0.90446 1.26757 1.04233 0.91504 0.95644 1.69891 1.37737 1.35986 1.02238 0.85246 0.76685 0.79960 0.77762 1.18567 1.19409 1.18284 1.20897 0.93064 1.01319 1.01976 1.20015 0.96000 1.02620 0.96819 0.93652 0.94527 0.89730 0.92236 0.93551 0.93735 0.92308 0.76877 0.83216 0.88763 0.93009 0.76798 0.91506 0.91206 0.85147 0.87457 0.90216 0.87301 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.38 -7.53 8.21 -126.65 -1.04 -8.57 16 3 C 0.07 1.14 5.77 71.98 0.42 1.56 16 4 C 0.09 1.21 2.91 44.91 0.13 1.34 16 5 H 0.12 1.19 7.80 -2.39 -0.02 1.17 16 6 C 0.05 0.61 6.72 71.98 0.48 1.09 16 7 O -0.56 -8.92 10.59 -126.65 -1.34 -10.26 16 8 N -0.68 -12.64 6.15 -491.57 -3.02 -15.66 16 9 C 0.04 0.67 5.12 86.30 0.44 1.12 16 10 C 0.12 2.99 3.43 30.60 0.10 3.10 16 11 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 12 O -0.56 -15.50 13.25 -144.33 -1.91 -17.41 16 13 C 0.03 0.88 4.36 71.98 0.31 1.19 16 14 O -0.33 -13.48 10.09 -85.33 -0.86 -14.34 16 15 C 0.00 0.00 6.71 22.79 0.15 0.15 16 16 C -0.16 -7.17 8.96 22.11 0.20 -6.98 16 17 C -0.21 -10.11 9.74 22.48 0.22 -9.89 16 18 C 0.05 2.93 5.57 -21.28 -0.12 2.81 16 19 C -0.50 -27.16 9.04 23.40 0.21 -26.95 16 20 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 21 C 0.03 1.66 5.13 85.23 0.44 2.10 16 22 N -0.83 -44.48 10.96 21.82 0.24 -44.24 16 23 Si 0.98 38.61 29.60 68.60 2.03 40.64 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 25 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 27 C -0.15 -8.37 8.64 22.48 0.19 -8.18 16 28 C -0.14 -6.84 9.92 22.11 0.22 -6.62 16 29 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.04 0.52 7.35 -2.38 -0.02 0.50 16 35 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.38 3.21 9.12 -74.06 -0.68 2.53 16 37 H 0.35 7.81 7.94 -89.70 -0.71 7.10 16 38 H 0.09 1.30 8.06 -2.39 -0.02 1.28 16 39 H 0.05 0.76 7.36 -2.39 -0.02 0.74 16 40 H 0.38 7.88 9.05 -74.06 -0.67 7.21 16 41 H 0.07 1.73 7.64 -2.39 -0.02 1.71 16 42 H 0.07 1.80 7.66 -2.39 -0.02 1.78 16 43 H 0.13 4.59 6.27 -2.91 -0.02 4.57 16 44 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 45 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 46 H 0.11 6.19 6.16 -2.91 -0.02 6.17 16 47 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -69.61 386.91 -2.31 -71.92 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -1.06 Total: 40.43 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 4.65 Total: -42.50 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -2.78 Total: -59.90 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -5.15 Total: -50.58 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -69.61 -2.31 -71.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592430738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.838 kcal (2) G-P(sol) polarization free energy of solvation -69.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds