Wall clock time and date at job start Fri Apr 10 2020 18:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34221 * 117.00297 * 2 1 4 4 O 1.20830 * 120.00016 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47326 * 59.99171 * 5 3 2 7 7 C 1.53002 * 109.46654 * 299.99765 * 5 3 2 8 8 C 1.52997 * 109.47175 * 180.02562 * 7 5 3 9 9 C 1.53001 * 109.47322 * 59.99783 * 8 7 5 10 10 C 1.53002 * 109.47173 * 300.00218 * 9 8 7 11 11 H 1.08996 * 109.47241 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47119 * 299.99918 * 10 9 8 13 13 O 1.21282 * 119.99989 * 1.27042 * 12 10 9 14 14 N 1.34772 * 120.00028 * 181.26453 * 12 10 9 15 15 C 1.47431 * 125.64955 * 4.74386 * 14 12 10 16 16 C 1.55128 * 104.72151 * 155.81481 * 15 14 12 17 17 C 1.55150 * 101.48739 * 37.29293 * 16 15 14 18 18 O 1.42899 * 110.86996 * 82.76964 * 17 16 15 19 19 C 1.50700 * 110.71877 * 205.96742 * 17 16 15 20 20 H 1.08003 * 119.99979 * 116.63421 * 19 17 16 21 21 C 1.37881 * 120.00257 * 296.62455 * 19 17 16 22 22 N 1.31514 * 119.99412 * 5.58704 * 21 19 17 23 23 Si 1.86796 * 119.99967 * 185.57850 * 21 19 17 24 24 H 1.48493 * 109.47166 * 94.98674 * 23 21 19 25 25 H 1.48503 * 109.47005 * 214.98470 * 23 21 19 26 26 H 1.48494 * 109.47432 * 334.98120 * 23 21 19 27 27 C 1.47021 * 125.64825 * 185.04418 * 14 12 10 28 28 C 1.52996 * 109.47120 * 180.02562 * 5 3 2 29 29 H 1.08999 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46844 * 300.00485 * 1 2 3 31 31 H 1.08999 * 109.46941 * 60.00140 * 1 2 3 32 32 H 1.08993 * 109.47489 * 59.99643 * 7 5 3 33 33 H 1.09000 * 109.47293 * 299.99794 * 7 5 3 34 34 H 1.09000 * 109.47267 * 300.00276 * 8 7 5 35 35 H 1.08996 * 109.47375 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47279 * 59.99913 * 9 8 7 37 37 H 1.08994 * 109.47600 * 180.02562 * 9 8 7 38 38 H 1.09000 * 110.36560 * 274.74195 * 15 14 12 39 39 H 1.09001 * 110.36458 * 37.06205 * 15 14 12 40 40 H 1.09003 * 111.19051 * 279.18885 * 16 15 14 41 41 H 1.09002 * 110.93418 * 155.29177 * 16 15 14 42 42 H 0.96699 * 114.00706 * 60.42879 * 18 17 16 43 43 H 0.97006 * 119.99512 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.88638 * 300.44502 * 27 14 12 45 45 H 1.08998 * 109.88185 * 61.45944 * 27 14 12 46 46 H 1.09004 * 109.47313 * 299.99292 * 28 5 3 47 47 H 1.09000 * 109.47429 * 59.99837 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7807 -0.8907 7 6 4.1138 0.5810 1.2484 8 6 5.6417 0.6615 1.2482 9 6 6.0751 2.1289 1.2486 10 6 5.5276 2.8227 -0.0004 11 1 5.8360 3.8681 0.0001 12 6 6.0665 2.1401 -1.2311 13 8 6.7963 1.1777 -1.1204 14 7 5.7373 2.5989 -2.4548 15 6 4.9450 3.8105 -2.7338 16 6 5.3651 4.2353 -4.1654 17 6 5.5338 2.8580 -4.8594 18 8 4.2735 2.3568 -5.3093 19 6 6.5071 2.9543 -6.0059 20 1 7.4315 2.3965 -5.9779 21 6 6.2174 3.7545 -7.0908 22 7 5.1465 4.5177 -7.0775 23 14 7.3462 3.7546 -8.5791 24 1 6.8287 2.8009 -9.5929 25 1 7.3953 5.1192 -9.1630 26 1 8.7118 3.3441 -8.1648 27 6 6.1036 1.9706 -3.7326 28 6 4.0002 2.7419 0.0002 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.8047 -0.4642 1.2484 33 1 3.7245 1.0749 2.1386 34 1 6.0315 0.1679 0.3580 35 1 6.0317 0.1677 2.1382 36 1 5.6853 2.6226 2.1388 37 1 7.1635 2.1863 1.2480 38 1 3.8795 3.5830 -2.7003 39 1 5.1887 4.5961 -2.0185 40 1 6.3065 4.7846 -4.1531 41 1 4.5799 4.8205 -4.6441 42 1 3.8300 2.9272 -5.9519 43 1 4.9428 5.0809 -7.8406 44 1 7.1886 1.9123 -3.8195 45 1 5.6729 0.9711 -3.7911 46 1 3.6102 3.2366 -0.8894 47 1 3.6108 3.2355 0.8906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:38 Heat of formation + Delta-G solvation = -183.151340 kcal Electronic energy + Delta-G solvation = -29768.546564 eV Core-core repulsion = 25722.772703 eV Total energy + Delta-G solvation = -4045.773861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.177 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01241 -39.95819 -37.98764 -36.81230 -36.21717 -34.42508 -32.24164 -31.66656 -31.17709 -29.47007 -28.27594 -27.83332 -25.37293 -23.92500 -23.55311 -22.05719 -21.17109 -20.38593 -19.58067 -18.37630 -17.66578 -17.26648 -16.91900 -16.55407 -16.12025 -15.32225 -15.18178 -14.91906 -14.85424 -14.38633 -14.07206 -14.01752 -13.52890 -13.28199 -12.98491 -12.71047 -12.66696 -12.53827 -12.30174 -12.15797 -12.04135 -11.79071 -11.53060 -11.38754 -11.31072 -11.27341 -10.95810 -10.90143 -10.80795 -10.66620 -10.56401 -10.48321 -10.22940 -10.15843 -10.07781 -9.40958 -9.11102 -8.71398 -8.23922 -8.00947 -6.30194 -4.37374 2.15827 2.62901 3.01288 3.19312 3.27247 3.30533 3.51736 4.25977 4.44504 4.56152 4.60220 4.85730 4.96519 4.97466 5.05192 5.08230 5.13400 5.16320 5.29815 5.36804 5.39709 5.48174 5.55078 5.61063 5.70411 5.83956 5.87383 5.91383 5.98001 6.04010 6.05329 6.13886 6.21098 6.28184 6.33999 6.41451 6.57122 6.68571 6.89689 6.95638 7.27316 7.34371 7.68463 7.71646 8.00627 8.10454 8.60666 8.65571 9.27414 9.34764 10.76936 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.003733 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.902736 B = 7499.251152 C = 8472.353700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.507 6.507 5 C -0.081 4.081 6 H 0.110 0.890 7 C -0.107 4.107 8 C -0.133 4.133 9 C -0.097 4.097 10 C -0.104 4.104 11 H 0.099 0.901 12 C 0.524 3.476 13 O -0.548 6.548 14 N -0.606 5.606 15 C 0.092 3.908 16 C -0.133 4.133 17 C 0.247 3.753 18 O -0.585 6.585 19 C -0.535 4.535 20 H 0.064 0.936 21 C 0.073 3.927 22 N -0.894 5.894 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.272 1.272 27 C 0.123 3.877 28 C -0.099 4.099 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.381 0.619 43 H 0.267 0.733 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 -3.301 15.707 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.394 6.394 5 C -0.100 4.100 6 H 0.128 0.872 7 C -0.144 4.144 8 C -0.170 4.170 9 C -0.135 4.135 10 C -0.125 4.125 11 H 0.117 0.883 12 C 0.313 3.687 13 O -0.428 6.428 14 N -0.339 5.339 15 C -0.030 4.030 16 C -0.172 4.172 17 C 0.206 3.794 18 O -0.393 6.393 19 C -0.574 4.574 20 H 0.082 0.918 21 C -0.129 4.129 22 N -0.534 5.534 23 Si 0.729 3.271 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.197 1.197 27 C 0.001 3.999 28 C -0.137 4.137 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.230 0.770 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.268 -3.898 16.133 17.414 hybrid contribution 0.058 0.770 -1.374 1.576 sum -5.211 -3.128 14.759 15.961 Atomic orbital electron populations 1.23259 0.76555 1.03593 1.02522 1.86519 1.23266 1.33594 1.84035 1.23827 0.91994 0.81241 0.71761 1.90654 1.67192 1.36303 1.45240 1.21137 0.86666 0.99503 1.02702 0.87225 1.21530 0.97117 1.00624 0.95170 1.21814 0.93723 0.97083 1.04363 1.21335 1.01148 0.95794 0.95235 1.21314 0.95806 1.01353 0.94053 0.88252 1.20145 0.80823 0.84275 0.83465 1.90579 1.37666 1.28460 1.86085 1.48684 1.52503 1.26985 1.05687 1.22649 0.95024 0.85936 0.99405 1.23352 1.02025 1.00629 0.91187 1.19451 0.82892 0.87184 0.89828 1.86140 1.35709 1.52972 1.64489 1.21521 1.05040 1.27793 1.03017 0.91771 1.24976 0.95498 0.93896 0.98557 1.69748 1.26528 1.25937 1.31141 0.86423 0.80936 0.77390 0.82364 1.20432 1.21093 1.19700 1.22061 0.99675 0.96820 0.81339 1.21506 0.93476 0.93910 1.04763 0.88181 0.92057 0.91772 0.90729 0.91766 0.88230 0.91803 0.91587 0.91058 0.91804 0.92080 0.91377 0.89352 0.76961 0.92273 0.90979 0.92266 0.89660 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.56 10.47 -39.23 -0.41 -4.97 16 3 C 0.47 6.59 7.25 36.01 0.26 6.85 16 4 O -0.51 -8.11 15.73 -18.75 -0.30 -8.41 16 5 C -0.08 -1.07 2.41 -91.77 -0.22 -1.29 16 6 H 0.11 1.67 7.22 -51.93 -0.37 1.30 16 7 C -0.11 -1.18 5.13 -26.73 -0.14 -1.32 16 8 C -0.13 -1.56 5.63 -26.73 -0.15 -1.71 16 9 C -0.10 -1.11 5.10 -26.73 -0.14 -1.25 16 10 C -0.10 -1.36 2.39 -91.79 -0.22 -1.57 16 11 H 0.10 1.15 7.71 -51.93 -0.40 0.75 16 12 C 0.52 9.05 5.68 -10.99 -0.06 8.99 16 13 O -0.55 -10.77 13.95 5.56 0.08 -10.70 16 14 N -0.61 -11.41 3.31 -170.38 -0.56 -11.97 16 15 C 0.09 1.63 5.35 -2.41 -0.01 1.62 16 16 C -0.13 -2.82 5.48 -24.47 -0.13 -2.95 16 17 C 0.25 5.82 0.84 -89.94 -0.08 5.74 16 18 O -0.58 -14.39 13.07 -35.23 -0.46 -14.85 16 19 C -0.54 -13.84 8.20 -34.44 -0.28 -14.12 16 20 H 0.06 1.67 7.56 -52.48 -0.40 1.28 16 21 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 22 N -0.89 -22.70 10.72 55.43 0.59 -22.10 16 23 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.12 2.69 6.22 -3.06 -0.02 2.67 16 28 C -0.10 -1.27 3.88 -26.75 -0.10 -1.37 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 32 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.47 5.46 -51.93 -0.28 1.19 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 38 H 0.06 1.13 6.94 -51.93 -0.36 0.77 16 39 H 0.06 0.91 7.47 -51.93 -0.39 0.52 16 40 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 41 H 0.09 1.96 7.52 -51.93 -0.39 1.57 16 42 H 0.38 9.37 7.56 45.56 0.34 9.71 16 43 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 44 H 0.07 1.63 7.65 -51.93 -0.40 1.23 16 45 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 46 H 0.08 1.21 5.28 -51.93 -0.27 0.93 16 47 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -28.86 365.46 -7.59 -36.45 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -6.69 Total: 12.47 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -0.32 Total: 3.45 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.03 Total: -34.07 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.09 Total: -38.92 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.86 -7.59 -36.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.702 kcal (2) G-P(sol) polarization free energy of solvation -28.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds