Wall clock time and date at job start Fri Apr 10 2020 18:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34221 * 117.00297 * 2 1 4 4 O 1.20830 * 120.00016 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00302 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47326 * 59.99171 * 5 3 2 7 7 C 1.53002 * 109.46654 * 299.99765 * 5 3 2 8 8 C 1.52997 * 109.47175 * 180.02562 * 7 5 3 9 9 C 1.53001 * 109.47322 * 59.99783 * 8 7 5 10 10 C 1.53002 * 109.47173 * 300.00218 * 9 8 7 11 11 H 1.08996 * 109.47241 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47119 * 299.99918 * 10 9 8 13 13 O 1.21282 * 119.99989 * 1.27042 * 12 10 9 14 14 N 1.34772 * 120.00028 * 181.26453 * 12 10 9 15 15 C 1.47431 * 125.64955 * 4.74386 * 14 12 10 16 16 C 1.55128 * 104.72151 * 155.81481 * 15 14 12 17 17 C 1.55150 * 101.48739 * 37.29293 * 16 15 14 18 18 O 1.42899 * 110.86996 * 82.76964 * 17 16 15 19 19 C 1.50700 * 110.71877 * 205.96742 * 17 16 15 20 20 H 1.08003 * 119.99979 * 116.63421 * 19 17 16 21 21 C 1.37881 * 120.00257 * 296.62455 * 19 17 16 22 22 N 1.31514 * 119.99412 * 5.58704 * 21 19 17 23 23 Si 1.86796 * 119.99967 * 185.57850 * 21 19 17 24 24 H 1.48493 * 109.47166 * 94.98674 * 23 21 19 25 25 H 1.48503 * 109.47005 * 214.98470 * 23 21 19 26 26 H 1.48494 * 109.47432 * 334.98120 * 23 21 19 27 27 C 1.47021 * 125.64825 * 185.04418 * 14 12 10 28 28 C 1.52996 * 109.47120 * 180.02562 * 5 3 2 29 29 H 1.08999 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46844 * 300.00485 * 1 2 3 31 31 H 1.08999 * 109.46941 * 60.00140 * 1 2 3 32 32 H 1.08993 * 109.47489 * 59.99643 * 7 5 3 33 33 H 1.09000 * 109.47293 * 299.99794 * 7 5 3 34 34 H 1.09000 * 109.47267 * 300.00276 * 8 7 5 35 35 H 1.08996 * 109.47375 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47279 * 59.99913 * 9 8 7 37 37 H 1.08994 * 109.47600 * 180.02562 * 9 8 7 38 38 H 1.09000 * 110.36560 * 274.74195 * 15 14 12 39 39 H 1.09001 * 110.36458 * 37.06205 * 15 14 12 40 40 H 1.09003 * 111.19051 * 279.18885 * 16 15 14 41 41 H 1.09002 * 110.93418 * 155.29177 * 16 15 14 42 42 H 0.96699 * 114.00706 * 60.42879 * 18 17 16 43 43 H 0.97006 * 119.99512 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.88638 * 300.44502 * 27 14 12 45 45 H 1.08998 * 109.88185 * 61.45944 * 27 14 12 46 46 H 1.09004 * 109.47313 * 299.99292 * 28 5 3 47 47 H 1.09000 * 109.47429 * 59.99837 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7807 -0.8907 7 6 4.1138 0.5810 1.2484 8 6 5.6417 0.6615 1.2482 9 6 6.0751 2.1289 1.2486 10 6 5.5276 2.8227 -0.0004 11 1 5.8360 3.8681 0.0001 12 6 6.0665 2.1401 -1.2311 13 8 6.7963 1.1777 -1.1204 14 7 5.7373 2.5989 -2.4548 15 6 4.9450 3.8105 -2.7338 16 6 5.3651 4.2353 -4.1654 17 6 5.5338 2.8580 -4.8594 18 8 4.2735 2.3568 -5.3093 19 6 6.5071 2.9543 -6.0059 20 1 7.4315 2.3965 -5.9779 21 6 6.2174 3.7545 -7.0908 22 7 5.1465 4.5177 -7.0775 23 14 7.3462 3.7546 -8.5791 24 1 6.8287 2.8009 -9.5929 25 1 7.3953 5.1192 -9.1630 26 1 8.7118 3.3441 -8.1648 27 6 6.1036 1.9706 -3.7326 28 6 4.0002 2.7419 0.0002 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.8047 -0.4642 1.2484 33 1 3.7245 1.0749 2.1386 34 1 6.0315 0.1679 0.3580 35 1 6.0317 0.1677 2.1382 36 1 5.6853 2.6226 2.1388 37 1 7.1635 2.1863 1.2480 38 1 3.8795 3.5830 -2.7003 39 1 5.1887 4.5961 -2.0185 40 1 6.3065 4.7846 -4.1531 41 1 4.5799 4.8205 -4.6441 42 1 3.8300 2.9272 -5.9519 43 1 4.9428 5.0809 -7.8406 44 1 7.1886 1.9123 -3.8195 45 1 5.6729 0.9711 -3.7911 46 1 3.6102 3.2366 -0.8894 47 1 3.6108 3.2355 0.8906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:37 Heat of formation + Delta-G solvation = -201.434153 kcal Electronic energy + Delta-G solvation = -29769.339366 eV Core-core repulsion = 25722.772703 eV Total energy + Delta-G solvation = -4046.566664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.13710 -41.21277 -39.49887 -38.04605 -37.35563 -36.15484 -34.22463 -32.75891 -32.25886 -31.02461 -29.96782 -28.64936 -27.14919 -24.92540 -24.88939 -23.36137 -22.32559 -21.56588 -21.23272 -19.76046 -19.11131 -18.73438 -18.04781 -17.67596 -17.33017 -16.96137 -16.79429 -16.32456 -16.05750 -15.95970 -15.33168 -15.15798 -14.79834 -14.68201 -14.17900 -14.07436 -13.96099 -13.70641 -13.51958 -13.44753 -13.26055 -13.16843 -12.99848 -12.92123 -12.82524 -12.63281 -12.43330 -12.30179 -12.27153 -12.00273 -11.89388 -11.80230 -11.64912 -11.25530 -11.17403 -11.08588 -10.71371 -10.44098 -10.13952 -9.56759 -8.25254 -6.39214 1.08025 1.39938 1.43737 1.52135 1.63846 1.70539 2.07238 2.39256 2.99558 3.43175 3.47974 3.62100 3.75720 3.87649 3.98789 4.07918 4.13179 4.20034 4.27857 4.30653 4.30941 4.35529 4.38911 4.43783 4.52881 4.60774 4.67214 4.68917 4.70986 4.91003 4.98151 5.00019 5.03359 5.15025 5.17220 5.23108 5.28485 5.31460 5.38737 5.45467 5.53759 5.63096 5.75810 6.08150 6.61028 6.64281 6.68715 7.20300 7.30481 7.36076 8.80263 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.003733 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.902736 B = 7499.251152 C = 8472.353700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.470 3.530 4 O -0.529 6.529 5 C -0.082 4.082 6 H 0.081 0.919 7 C -0.099 4.099 8 C -0.131 4.131 9 C -0.096 4.096 10 C -0.095 4.095 11 H 0.124 0.876 12 C 0.520 3.480 13 O -0.575 6.575 14 N -0.611 5.611 15 C 0.105 3.895 16 C -0.124 4.124 17 C 0.235 3.765 18 O -0.592 6.592 19 C -0.564 4.564 20 H 0.050 0.950 21 C 0.039 3.961 22 N -0.904 5.904 23 Si 0.956 3.044 24 H -0.278 1.278 25 H -0.277 1.277 26 H -0.275 1.275 27 C 0.131 3.869 28 C -0.095 4.095 29 H 0.131 0.869 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.378 0.622 43 H 0.271 0.729 44 H 0.057 0.943 45 H 0.041 0.959 46 H 0.070 0.930 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.960 -2.498 17.806 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.314 3.686 4 O -0.418 6.418 5 C -0.101 4.101 6 H 0.099 0.901 7 C -0.137 4.137 8 C -0.169 4.169 9 C -0.133 4.133 10 C -0.116 4.116 11 H 0.142 0.858 12 C 0.311 3.689 13 O -0.456 6.456 14 N -0.344 5.344 15 C -0.017 4.017 16 C -0.163 4.163 17 C 0.195 3.805 18 O -0.401 6.401 19 C -0.602 4.602 20 H 0.069 0.931 21 C -0.162 4.162 22 N -0.542 5.542 23 Si 0.782 3.218 24 H -0.204 1.204 25 H -0.202 1.202 26 H -0.200 1.200 27 C 0.008 3.992 28 C -0.132 4.132 29 H 0.149 0.851 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.227 0.773 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.745 -3.101 18.252 19.384 hybrid contribution 0.169 0.422 -2.047 2.097 sum -5.576 -2.679 16.204 17.345 Atomic orbital electron populations 1.23564 0.74766 1.05713 1.02577 1.86510 1.25092 1.32964 1.83578 1.23953 0.92254 0.81255 0.71123 1.90638 1.67723 1.36986 1.46487 1.21150 0.86333 1.00000 1.02629 0.90069 1.21511 0.96486 1.00851 0.94811 1.21750 0.94102 0.97439 1.03562 1.21400 1.00898 0.95496 0.95523 1.21404 0.95823 1.02269 0.92077 0.85821 1.21082 0.79965 0.83903 0.83936 1.90580 1.38831 1.29697 1.86457 1.48742 1.53089 1.27334 1.05206 1.22590 0.94852 0.86277 0.97992 1.23120 1.01143 0.98802 0.93217 1.19582 0.82071 0.88959 0.89901 1.86129 1.36162 1.53314 1.64450 1.21734 1.05320 1.28435 1.04712 0.93142 1.25559 0.96772 0.93495 1.00411 1.69804 1.27037 1.25755 1.31646 0.85572 0.79174 0.77547 0.79474 1.20390 1.20220 1.19969 1.21725 0.98477 0.96014 0.83003 1.21496 0.92991 0.93525 1.05189 0.85129 0.91191 0.92548 0.90510 0.89459 0.91820 0.89787 0.88087 0.91650 0.91641 0.88274 0.92374 0.90463 0.77296 0.91963 0.92431 0.94078 0.91107 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.37 -8.90 10.47 -51.33 -0.54 -9.44 16 3 C 0.47 12.68 7.25 71.24 0.52 13.20 16 4 O -0.53 -16.26 15.73 21.95 0.35 -15.91 16 5 C -0.08 -2.06 2.41 -11.54 -0.03 -2.09 16 6 H 0.08 2.53 7.22 -2.39 -0.02 2.51 16 7 C -0.10 -1.97 5.13 30.59 0.16 -1.81 16 8 C -0.13 -2.83 5.63 30.59 0.17 -2.65 16 9 C -0.10 -1.89 5.10 30.60 0.16 -1.73 16 10 C -0.09 -2.23 2.39 -11.55 -0.03 -2.25 16 11 H 0.12 2.37 7.71 -2.39 -0.02 2.35 16 12 C 0.52 17.71 5.68 87.66 0.50 18.21 16 13 O -0.57 -22.92 13.95 -3.04 -0.04 -22.96 16 14 N -0.61 -23.05 3.31 -811.34 -2.69 -25.74 16 15 C 0.10 3.60 5.35 86.93 0.46 4.06 16 16 C -0.12 -5.28 5.48 32.06 0.18 -5.11 16 17 C 0.23 11.40 0.84 -10.35 -0.01 11.39 16 18 O -0.59 -30.03 13.07 -148.98 -1.95 -31.98 16 19 C -0.56 -29.97 8.20 25.60 0.21 -29.76 16 20 H 0.05 2.74 7.56 -2.91 -0.02 2.72 16 21 C 0.04 2.02 5.28 84.66 0.45 2.46 16 22 N -0.90 -46.07 10.72 21.45 0.23 -45.84 16 23 Si 0.96 41.51 29.54 68.60 2.03 43.53 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 27 C 0.13 5.97 6.22 86.73 0.54 6.51 16 28 C -0.09 -2.19 3.88 30.58 0.12 -2.07 16 29 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 32 H 0.08 1.49 8.11 -2.39 -0.02 1.47 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.87 5.46 -2.39 -0.01 1.86 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.40 8.11 -2.39 -0.02 1.38 16 38 H 0.07 2.25 6.94 -2.39 -0.02 2.24 16 39 H 0.10 2.67 7.47 -2.39 -0.02 2.65 16 40 H 0.06 2.56 8.04 -2.39 -0.02 2.54 16 41 H 0.08 3.44 7.52 -2.39 -0.02 3.42 16 42 H 0.38 19.13 7.56 -74.06 -0.56 18.57 16 43 H 0.27 13.15 8.31 -92.70 -0.77 12.38 16 44 H 0.06 2.74 7.65 -2.39 -0.02 2.72 16 45 H 0.04 1.97 8.07 -2.39 -0.02 1.95 16 46 H 0.07 1.87 5.28 -2.38 -0.01 1.85 16 47 H 0.11 2.00 8.10 -2.39 -0.02 1.98 16 Total: -1.00 -63.88 365.46 2.40 -61.49 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.42 Total: 36.83 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 4.59 Total: 10.02 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -2.46 Total: -71.58 kcal Atomic # 8 Polarization: -78.11 SS G_CDS: -2.18 Total: -80.29 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -63.88 2.40 -61.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.949 kcal (2) G-P(sol) polarization free energy of solvation -63.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds