Wall clock time and date at job start Fri Apr 10 2020 18:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00260 * 2 1 4 4 H 1.48505 * 109.46801 * 239.99700 * 3 2 1 5 5 H 1.48496 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47253 * 120.00063 * 3 2 1 7 7 C 1.38949 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00131 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00102 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00071 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00247 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47479 * 180.02562 * 12 10 9 14 14 C 1.46903 * 111.00471 * 179.97438 * 13 12 10 15 15 H 1.09005 * 110.88057 * 31.11928 * 14 13 12 16 16 C 1.55157 * 111.00462 * 267.19701 * 14 13 12 17 17 C 1.54325 * 102.94110 * 206.41792 * 16 14 13 18 18 N 1.47033 * 107.27007 * 22.19430 * 17 16 14 19 19 C 1.34773 * 125.64787 * 181.02197 * 18 17 16 20 20 O 1.21281 * 120.00016 * 174.97291 * 19 18 17 21 21 C 1.50703 * 120.00117 * 354.96973 * 19 18 17 22 22 C 1.53177 * 109.54448 * 214.48150 * 21 19 18 23 23 C 1.53102 * 109.15676 * 183.24324 * 22 21 19 24 24 O 1.42907 * 109.48905 * 57.47294 * 23 22 21 25 25 C 1.42901 * 114.09438 * 298.89024 * 24 23 22 26 26 C 1.53089 * 109.41789 * 61.15860 * 25 24 23 27 27 C 1.47426 * 108.70035 * 1.05919 * 18 17 16 28 28 H 0.97004 * 119.99936 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99870 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.47549 * 59.99575 * 12 10 9 31 31 H 1.09010 * 109.46614 * 300.00048 * 12 10 9 32 32 H 1.00904 * 111.00499 * 56.04031 * 13 12 10 33 33 H 1.08996 * 110.71878 * 324.78242 * 16 14 13 34 34 H 1.09006 * 110.71973 * 88.06194 * 16 14 13 35 35 H 1.08998 * 109.88685 * 262.77866 * 17 16 14 36 36 H 1.08999 * 110.00900 * 141.67858 * 17 16 14 37 37 H 1.08996 * 109.54241 * 334.65908 * 21 19 18 38 38 H 1.09007 * 109.51944 * 303.05414 * 22 21 19 39 39 H 1.09000 * 109.52371 * 63.24312 * 22 21 19 40 40 H 1.09004 * 109.40418 * 297.48942 * 23 22 21 41 41 H 1.08996 * 109.49235 * 177.50960 * 23 22 21 42 42 H 1.09002 * 109.48401 * 301.17195 * 25 24 23 43 43 H 1.09000 * 109.49095 * 181.15043 * 25 24 23 44 44 H 1.09003 * 109.52397 * 182.48545 * 26 25 24 45 45 H 1.09000 * 109.52365 * 62.29322 * 26 25 24 46 46 H 1.09008 * 110.36094 * 217.03244 * 27 18 17 47 47 H 1.08995 * 110.45898 * 94.76137 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9970 -3.5579 0.0016 11 8 3.2099 -3.5580 0.0011 12 6 1.2435 -4.8629 0.0022 13 7 2.1979 -5.9795 0.0027 14 6 1.4976 -7.2709 0.0039 15 1 0.5458 -7.1972 -0.5222 16 6 1.2953 -7.7925 1.4511 17 6 1.2173 -9.3218 1.2595 18 7 1.8799 -9.6364 -0.0148 19 6 2.0055 -10.8660 -0.5522 20 8 2.4924 -10.9990 -1.6550 21 6 1.5410 -12.0757 0.2172 22 6 2.4645 -13.2601 -0.0838 23 6 1.9381 -14.5037 0.6378 24 8 0.5952 -14.7627 0.2233 25 6 -0.3216 -13.7085 0.5236 26 6 0.1126 -12.4337 -0.2043 27 6 2.3848 -8.3842 -0.6068 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6164 -4.9209 -0.8875 31 1 0.6171 -4.9204 0.8925 32 1 2.8329 -5.9122 0.7840 33 1 2.1447 -7.5253 2.0796 34 1 0.3662 -7.4089 1.8729 35 1 0.1749 -9.6383 1.2233 36 1 1.7298 -9.8268 2.0783 37 1 1.5625 -11.8589 1.2852 38 1 2.4823 -13.4442 -1.1581 39 1 3.4722 -13.0342 0.2648 40 1 1.9601 -14.3341 1.7143 41 1 2.5660 -15.3599 0.3918 42 1 -0.3293 -13.5286 1.5986 43 1 -1.3217 -13.9918 0.1954 44 1 -0.5601 -11.6172 0.0583 45 1 0.0815 -12.6005 -1.2810 46 1 2.2741 -8.4057 -1.6911 47 1 3.4290 -8.2287 -0.3359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180634348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:51 Heat of formation + Delta-G solvation = -119.115468 kcal Electronic energy + Delta-G solvation = -27330.662978 eV Core-core repulsion = 23319.958671 eV Total energy + Delta-G solvation = -4010.704306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.79862 -39.34974 -38.40459 -37.65559 -34.84341 -34.08198 -33.79049 -31.59666 -31.29478 -30.69592 -29.15624 -26.80503 -25.66932 -24.06176 -23.94270 -23.28425 -21.31520 -20.82135 -19.37909 -19.32237 -17.96839 -17.64288 -16.80790 -16.51785 -16.33404 -16.00999 -15.54462 -15.30145 -15.16710 -14.67189 -14.55089 -14.16182 -14.10656 -13.86398 -13.68729 -13.58766 -13.05660 -12.94571 -12.87533 -12.70472 -12.39807 -12.09955 -11.93108 -11.73627 -11.67672 -11.51784 -11.41115 -11.19263 -11.06687 -11.02724 -10.88667 -10.46577 -10.29546 -10.24445 -9.76641 -9.53495 -8.89822 -8.52603 -8.15177 -7.99993 -6.45012 -3.85986 2.34883 2.64457 3.18019 3.24084 3.28456 3.43338 3.85654 3.95904 4.03969 4.19575 4.22754 4.27320 4.39982 4.51513 4.54626 4.67978 4.73507 4.79446 4.96237 5.02180 5.06808 5.08377 5.13472 5.17181 5.20917 5.22380 5.25401 5.34667 5.51505 5.53982 5.63371 5.65238 5.70225 5.80786 5.85088 5.86042 5.91279 6.03069 6.22136 6.73387 7.07772 7.25940 7.51882 7.52321 7.91677 8.02272 8.57149 9.14261 9.50038 10.01227 10.72523 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.042025 B = 0.001815 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.115883 B =15425.207640 C =15704.920104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.656 5.656 14 C 0.079 3.921 15 H 0.093 0.907 16 C -0.166 4.166 17 C 0.104 3.896 18 N -0.619 5.619 19 C 0.534 3.466 20 O -0.535 6.535 21 C -0.104 4.104 22 C -0.141 4.141 23 C 0.063 3.937 24 O -0.382 6.382 25 C 0.064 3.936 26 C -0.144 4.144 27 C 0.114 3.886 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.354 0.646 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 -25.993 5.873 26.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.288 5.288 14 C -0.033 4.033 15 H 0.111 0.889 16 C -0.206 4.206 17 C -0.019 4.019 18 N -0.354 5.354 19 C 0.323 3.677 20 O -0.411 6.411 21 C -0.125 4.125 22 C -0.179 4.179 23 C -0.014 4.014 24 O -0.300 6.300 25 C -0.013 4.013 26 C -0.182 4.182 27 C -0.008 4.008 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.175 0.825 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.788 -26.098 4.465 26.623 hybrid contribution -0.521 1.293 1.188 1.832 sum -3.309 -24.804 5.653 25.654 Atomic orbital electron populations 1.69602 1.05940 1.28317 1.50409 1.25269 0.95650 0.99760 0.97231 0.85905 0.78761 0.80386 0.79102 1.19852 1.20964 1.19910 1.19659 0.93367 0.82215 1.47778 0.87939 1.41849 1.09200 1.04593 1.64223 1.19771 0.88390 0.84691 0.84713 1.90532 1.13731 1.87028 1.55456 1.21706 0.94249 0.90752 1.01320 1.59892 1.18366 0.99058 1.51469 1.22740 0.97126 0.89547 0.93916 0.88883 1.23448 1.03726 0.94099 0.99292 1.21985 0.97455 0.96509 0.85970 1.48523 1.57357 1.06721 1.22809 1.20191 0.78500 0.82899 0.86147 1.90720 1.45008 1.85460 1.19948 1.21324 0.97126 0.93568 1.00522 1.22107 0.98716 0.93626 1.03496 1.22603 0.83457 0.97766 0.97600 1.87959 1.18194 1.41464 1.82406 1.22571 0.93486 0.86755 0.98491 1.22141 0.94390 0.98961 1.02755 1.22185 0.98193 0.81167 0.99285 0.91788 0.77449 0.89445 0.93645 0.82539 0.89956 0.89680 0.91312 0.91361 0.89217 0.89453 0.90452 0.93061 0.88358 0.92908 0.88348 0.90342 0.89986 0.89798 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 10 C 0.44 10.06 7.82 -10.99 -0.09 9.98 16 11 O -0.58 -15.54 15.78 5.55 0.09 -15.45 16 12 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 13 N -0.66 -9.80 6.04 -105.72 -0.64 -10.44 16 14 C 0.08 0.88 3.38 -65.56 -0.22 0.66 16 15 H 0.09 1.02 7.83 -51.93 -0.41 0.61 16 16 C -0.17 -1.38 6.55 -24.90 -0.16 -1.55 16 17 C 0.10 0.76 6.16 -3.06 -0.02 0.74 16 18 N -0.62 -6.43 3.33 -170.51 -0.57 -7.00 16 19 C 0.53 6.15 6.85 -10.99 -0.08 6.08 16 20 O -0.54 -8.36 16.44 5.56 0.09 -8.27 16 21 C -0.10 -0.83 2.23 -91.59 -0.20 -1.03 16 22 C -0.14 -1.13 5.14 -26.59 -0.14 -1.26 16 23 C 0.06 0.41 6.84 37.21 0.25 0.66 16 24 O -0.38 -3.21 10.77 -35.23 -0.38 -3.59 16 25 C 0.06 0.39 6.84 37.20 0.25 0.65 16 26 C -0.14 -1.02 5.41 -26.59 -0.14 -1.16 16 27 C 0.11 1.38 6.63 -2.53 -0.02 1.36 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 30 H 0.09 1.34 8.09 -51.93 -0.42 0.92 16 31 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.35 5.40 7.89 -39.29 -0.31 5.09 16 33 H 0.08 0.70 7.75 -51.93 -0.40 0.30 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.40 7.72 -51.93 -0.40 0.00 16 37 H 0.09 0.55 6.97 -51.93 -0.36 0.18 16 38 H 0.09 0.87 7.76 -51.93 -0.40 0.47 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.15 7.99 -51.92 -0.41 0.73 16 47 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -33.64 381.55 -8.44 -42.08 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -7.60 Total: 10.52 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.83 Total: 8.03 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.54 Total: -54.90 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.20 Total: -27.31 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.64 -8.44 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180634348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.035 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds