Wall clock time and date at job start Fri Apr 10 2020 18:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00260 * 2 1 4 4 H 1.48505 * 109.46801 * 239.99700 * 3 2 1 5 5 H 1.48496 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47253 * 120.00063 * 3 2 1 7 7 C 1.38949 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00131 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00102 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00071 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00247 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47479 * 180.02562 * 12 10 9 14 14 C 1.46903 * 111.00471 * 179.97438 * 13 12 10 15 15 H 1.09005 * 110.88057 * 31.11928 * 14 13 12 16 16 C 1.55157 * 111.00462 * 267.19701 * 14 13 12 17 17 C 1.54325 * 102.94110 * 206.41792 * 16 14 13 18 18 N 1.47033 * 107.27007 * 22.19430 * 17 16 14 19 19 C 1.34773 * 125.64787 * 181.02197 * 18 17 16 20 20 O 1.21281 * 120.00016 * 174.97291 * 19 18 17 21 21 C 1.50703 * 120.00117 * 354.96973 * 19 18 17 22 22 C 1.53177 * 109.54448 * 214.48150 * 21 19 18 23 23 C 1.53102 * 109.15676 * 183.24324 * 22 21 19 24 24 O 1.42907 * 109.48905 * 57.47294 * 23 22 21 25 25 C 1.42901 * 114.09438 * 298.89024 * 24 23 22 26 26 C 1.53089 * 109.41789 * 61.15860 * 25 24 23 27 27 C 1.47426 * 108.70035 * 1.05919 * 18 17 16 28 28 H 0.97004 * 119.99936 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99870 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.47549 * 59.99575 * 12 10 9 31 31 H 1.09010 * 109.46614 * 300.00048 * 12 10 9 32 32 H 1.00904 * 111.00499 * 56.04031 * 13 12 10 33 33 H 1.08996 * 110.71878 * 324.78242 * 16 14 13 34 34 H 1.09006 * 110.71973 * 88.06194 * 16 14 13 35 35 H 1.08998 * 109.88685 * 262.77866 * 17 16 14 36 36 H 1.08999 * 110.00900 * 141.67858 * 17 16 14 37 37 H 1.08996 * 109.54241 * 334.65908 * 21 19 18 38 38 H 1.09007 * 109.51944 * 303.05414 * 22 21 19 39 39 H 1.09000 * 109.52371 * 63.24312 * 22 21 19 40 40 H 1.09004 * 109.40418 * 297.48942 * 23 22 21 41 41 H 1.08996 * 109.49235 * 177.50960 * 23 22 21 42 42 H 1.09002 * 109.48401 * 301.17195 * 25 24 23 43 43 H 1.09000 * 109.49095 * 181.15043 * 25 24 23 44 44 H 1.09003 * 109.52397 * 182.48545 * 26 25 24 45 45 H 1.09000 * 109.52365 * 62.29322 * 26 25 24 46 46 H 1.09008 * 110.36094 * 217.03244 * 27 18 17 47 47 H 1.08995 * 110.45898 * 94.76137 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9970 -3.5579 0.0016 11 8 3.2099 -3.5580 0.0011 12 6 1.2435 -4.8629 0.0022 13 7 2.1979 -5.9795 0.0027 14 6 1.4976 -7.2709 0.0039 15 1 0.5458 -7.1972 -0.5222 16 6 1.2953 -7.7925 1.4511 17 6 1.2173 -9.3218 1.2595 18 7 1.8799 -9.6364 -0.0148 19 6 2.0055 -10.8660 -0.5522 20 8 2.4924 -10.9990 -1.6550 21 6 1.5410 -12.0757 0.2172 22 6 2.4645 -13.2601 -0.0838 23 6 1.9381 -14.5037 0.6378 24 8 0.5952 -14.7627 0.2233 25 6 -0.3216 -13.7085 0.5236 26 6 0.1126 -12.4337 -0.2043 27 6 2.3848 -8.3842 -0.6068 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6164 -4.9209 -0.8875 31 1 0.6171 -4.9204 0.8925 32 1 2.8329 -5.9122 0.7840 33 1 2.1447 -7.5253 2.0796 34 1 0.3662 -7.4089 1.8729 35 1 0.1749 -9.6383 1.2233 36 1 1.7298 -9.8268 2.0783 37 1 1.5625 -11.8589 1.2852 38 1 2.4823 -13.4442 -1.1581 39 1 3.4722 -13.0342 0.2648 40 1 1.9601 -14.3341 1.7143 41 1 2.5660 -15.3599 0.3918 42 1 -0.3293 -13.5286 1.5986 43 1 -1.3217 -13.9918 0.1954 44 1 -0.5601 -11.6172 0.0583 45 1 0.0815 -12.6005 -1.2810 46 1 2.2741 -8.4057 -1.6911 47 1 3.4290 -8.2287 -0.3359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180634348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:50 Heat of formation + Delta-G solvation = -145.346003 kcal Electronic energy + Delta-G solvation = -27331.800419 eV Core-core repulsion = 23319.958671 eV Total energy + Delta-G solvation = -4011.841748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.58627 -40.29521 -39.80324 -38.71365 -36.21984 -35.59450 -34.70321 -33.27126 -32.11913 -31.63796 -30.06171 -28.08242 -26.76189 -25.49756 -24.55176 -24.06607 -22.07814 -21.59432 -21.08641 -20.11878 -19.92585 -18.49928 -17.75944 -17.54796 -17.06460 -16.98552 -16.76811 -16.34726 -16.26385 -15.91067 -15.69299 -15.47759 -15.21721 -14.67275 -14.64586 -14.56497 -14.12912 -14.07220 -13.81724 -13.71051 -13.47506 -13.28588 -13.12277 -12.93492 -12.72072 -12.52222 -12.44022 -12.39131 -12.27118 -12.12416 -11.79400 -11.74089 -11.50763 -11.49936 -10.98097 -10.46193 -10.35843 -10.01681 -9.74517 -9.32405 -8.46747 -5.95306 1.39750 1.42129 1.48439 1.52615 1.81561 2.05406 2.29473 2.89725 2.97529 3.20638 3.29884 3.45068 3.61670 3.67382 3.71936 3.83405 3.98683 4.00757 4.15635 4.26420 4.27865 4.29793 4.36111 4.47308 4.49532 4.57795 4.58479 4.62359 4.65824 4.74311 4.78602 4.81844 4.85454 4.98904 5.04818 5.06864 5.07761 5.16146 5.28321 5.40997 5.87474 6.08089 6.27016 6.35593 6.44566 6.60141 7.05104 7.12683 7.56416 8.11859 8.70202 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.042025 B = 0.001815 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.115883 B =15425.207640 C =15704.920104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.069 3.931 13 N -0.675 5.675 14 C 0.083 3.917 15 H 0.101 0.899 16 C -0.156 4.156 17 C 0.102 3.898 18 N -0.617 5.617 19 C 0.527 3.473 20 O -0.589 6.589 21 C -0.096 4.096 22 C -0.141 4.141 23 C 0.065 3.935 24 O -0.406 6.406 25 C 0.062 3.938 26 C -0.141 4.141 27 C 0.114 3.886 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.350 0.650 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 -26.734 8.177 28.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.063 4.063 13 N -0.307 5.307 14 C -0.028 4.028 15 H 0.119 0.881 16 C -0.196 4.196 17 C -0.020 4.020 18 N -0.350 5.350 19 C 0.317 3.683 20 O -0.469 6.469 21 C -0.117 4.117 22 C -0.179 4.179 23 C -0.012 4.012 24 O -0.325 6.325 25 C -0.014 4.014 26 C -0.179 4.179 27 C -0.009 4.009 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.171 0.829 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.095 0.905 43 H 0.127 0.873 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.538 -26.852 6.801 28.069 hybrid contribution 0.044 1.485 0.437 1.549 sum -4.493 -25.367 7.238 26.759 Atomic orbital electron populations 1.69657 1.06741 1.29359 1.50188 1.26016 0.96559 1.02349 0.96282 0.85006 0.77781 0.76768 0.78897 1.19973 1.19464 1.19613 1.19619 0.92698 0.84094 1.50051 0.90399 1.41914 1.09367 1.04667 1.64973 1.20922 0.88259 0.86253 0.82232 1.90502 1.15989 1.87988 1.56718 1.21539 0.93785 0.87469 1.03476 1.59801 1.18888 1.00169 1.51888 1.22683 0.96502 0.87306 0.96310 0.88100 1.23396 1.04759 0.94652 0.96777 1.22258 0.98970 0.95953 0.84836 1.48605 1.56881 1.05778 1.23738 1.20935 0.77609 0.83971 0.85743 1.90694 1.47509 1.86257 1.22472 1.21372 0.97388 0.91485 1.01486 1.22091 0.99238 0.94759 1.01861 1.22679 0.82856 0.97069 0.98552 1.87934 1.19066 1.42550 1.82946 1.22732 0.93428 0.85497 0.99728 1.22134 0.94110 1.00353 1.01280 1.22013 0.98013 0.82851 0.98059 0.91281 0.76867 0.87922 0.90443 0.82939 0.90024 0.87630 0.88688 0.88945 0.86112 0.92552 0.90213 0.90713 0.87710 0.90468 0.87348 0.88524 0.92746 0.92409 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.75 13.05 21.66 0.28 -48.47 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 0.99 42.52 29.55 68.60 2.03 44.54 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 N -0.57 -28.62 5.29 -306.99 -1.62 -30.24 16 10 C 0.44 20.06 7.82 87.66 0.69 20.74 16 11 O -0.63 -34.11 15.78 -3.06 -0.05 -34.16 16 12 C 0.07 2.18 6.03 85.56 0.52 2.69 16 13 N -0.68 -19.59 6.04 -488.40 -2.95 -22.54 16 14 C 0.08 1.72 3.38 46.31 0.16 1.87 16 15 H 0.10 1.96 7.83 -2.38 -0.02 1.94 16 16 C -0.16 -2.07 6.55 31.78 0.21 -1.86 16 17 C 0.10 1.09 6.16 86.73 0.53 1.62 16 18 N -0.62 -11.94 3.33 -811.77 -2.70 -14.64 16 19 C 0.53 11.94 6.85 87.66 0.60 12.54 16 20 O -0.59 -19.41 16.44 -3.03 -0.05 -19.46 16 21 C -0.10 -1.35 2.23 -11.42 -0.03 -1.38 16 22 C -0.14 -2.17 5.14 30.69 0.16 -2.01 16 23 C 0.06 0.73 6.84 72.02 0.49 1.22 16 24 O -0.41 -6.12 10.77 -148.98 -1.60 -7.72 16 25 C 0.06 0.59 6.84 72.01 0.49 1.09 16 26 C -0.14 -1.72 5.41 30.68 0.17 -1.55 16 27 C 0.11 2.77 6.63 86.85 0.58 3.34 16 28 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.40 18.70 7.90 -92.71 -0.73 17.97 16 30 H 0.10 2.95 8.09 -2.38 -0.02 2.93 16 31 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.35 10.51 7.89 -89.69 -0.71 9.80 16 33 H 0.08 1.14 7.75 -2.39 -0.02 1.12 16 34 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.63 7.72 -2.39 -0.02 0.61 16 37 H 0.12 0.96 6.97 -2.39 -0.02 0.94 16 38 H 0.06 1.21 7.76 -2.38 -0.02 1.19 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 1.68 7.99 -2.38 -0.02 1.66 16 47 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -76.64 381.55 -1.28 -77.91 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -0.45 Total: 34.61 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 5.84 Total: 20.16 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -6.99 Total: -115.89 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -1.70 Total: -61.34 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -76.64 -1.28 -77.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180634348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.435 kcal (2) G-P(sol) polarization free energy of solvation -76.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds