Wall clock time and date at job start Fri Apr 10 2020 18:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.64192 * 34.29602 * 10 9 7 12 12 C 1.55154 * 110.71933 * 271.15564 * 10 9 7 13 13 C 1.54912 * 101.58394 * 206.13135 * 12 10 9 14 14 N 1.47420 * 104.83066 * 37.00976 * 13 12 10 15 15 C 1.34771 * 125.64997 * 155.83681 * 14 13 12 16 16 O 1.21288 * 120.00158 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99919 * 0.02562 * 15 14 13 18 18 C 1.53002 * 109.46988 * 180.02562 * 17 15 14 19 19 C 1.50707 * 109.46810 * 179.97438 * 18 17 15 20 20 O 1.21281 * 119.99965 * 0.02562 * 19 18 17 21 21 N 1.34771 * 119.99741 * 179.97438 * 19 18 17 22 22 C 1.47154 * 120.98366 * 359.71874 * 21 19 18 23 23 C 1.53713 * 108.16151 * 129.43191 * 22 21 19 24 24 O 1.42961 * 109.14523 * 52.53856 * 23 22 21 25 25 C 1.42960 * 114.16897 * 297.28758 * 24 23 22 26 26 C 1.47155 * 120.98187 * 180.02562 * 21 19 18 27 27 C 1.47321 * 108.73540 * 335.71290 * 14 13 12 28 28 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 30 30 H 1.08997 * 111.00426 * 324.20763 * 12 10 9 31 31 H 1.09009 * 111.00378 * 88.05839 * 12 10 9 32 32 H 1.09004 * 110.36587 * 155.84869 * 13 12 10 33 33 H 1.08996 * 110.36564 * 278.06258 * 13 12 10 34 34 H 1.09004 * 109.46821 * 300.00003 * 17 15 14 35 35 H 1.08993 * 109.46959 * 60.00041 * 17 15 14 36 36 H 1.08994 * 109.47317 * 299.99474 * 18 17 15 37 37 H 1.08993 * 109.47304 * 60.00170 * 18 17 15 38 38 H 1.09001 * 109.68049 * 249.21124 * 22 21 19 39 39 H 1.08996 * 109.68422 * 9.76536 * 22 21 19 40 40 H 1.08998 * 109.65797 * 292.57470 * 23 22 21 41 41 H 1.09001 * 109.48664 * 172.39843 * 23 22 21 42 42 H 1.09004 * 109.51030 * 302.65734 * 25 24 23 43 43 H 1.09000 * 109.55862 * 182.53203 * 25 24 23 44 44 H 1.08994 * 109.68088 * 350.23576 * 26 21 19 45 45 H 1.09002 * 109.68311 * 110.75209 * 26 21 19 46 46 H 1.08999 * 110.06765 * 241.87056 * 27 14 13 47 47 H 1.09008 * 109.84983 * 120.61189 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5748 -3.2248 -0.5741 12 6 4.3608 -2.9610 1.4520 13 6 5.6352 -3.8238 1.2747 14 7 6.4391 -3.1070 0.2681 15 6 7.7756 -3.1979 0.1204 16 8 8.3349 -2.5591 -0.7458 17 6 8.5753 -4.0930 1.0316 18 6 10.0559 -4.0130 0.6543 19 6 10.8556 -4.9078 1.5660 20 8 10.2963 -5.5468 2.4319 21 7 12.1921 -4.9985 1.4184 22 6 12.8919 -4.2384 0.3705 23 6 14.0655 -3.4908 1.0237 24 8 14.8564 -4.4196 1.7690 25 6 14.1620 -5.0426 2.8523 26 6 12.9940 -5.8658 2.2961 27 6 5.5398 -2.2771 -0.5521 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3620 0.0007 30 1 4.5474 -2.1214 2.1215 31 1 3.5265 -3.5652 1.8086 32 1 6.1802 -3.8932 2.2161 33 1 5.3728 -4.8186 0.9148 34 1 8.4458 -3.7691 2.0643 35 1 8.2283 -5.1210 0.9271 36 1 10.1857 -4.3367 -0.3783 37 1 10.4025 -2.9850 0.7592 38 1 13.2668 -4.9225 -0.3908 39 1 12.2066 -3.5229 -0.0837 40 1 13.6825 -2.7199 1.6924 41 1 14.6787 -3.0295 0.2496 42 1 13.7794 -4.2773 3.5276 43 1 14.8438 -5.6982 3.3939 44 1 12.3763 -6.2284 3.1176 45 1 13.3785 -6.7109 1.7252 46 1 5.5807 -2.5976 -1.5931 47 1 5.8288 -1.2290 -0.4733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187644188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:36 Heat of formation + Delta-G solvation = -116.557471 kcal Electronic energy + Delta-G solvation = -27464.123202 eV Core-core repulsion = 23453.529819 eV Total energy + Delta-G solvation = -4010.593383 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.55789 -40.95867 -39.39922 -38.75223 -36.02948 -35.85089 -34.16070 -33.48707 -32.33138 -31.28620 -29.83048 -28.98905 -26.80864 -25.26299 -24.75762 -23.95646 -22.84511 -21.71521 -20.36386 -20.01975 -19.74143 -18.78122 -17.84959 -17.61788 -17.37096 -17.04314 -16.70567 -16.46408 -16.34852 -16.05177 -15.89638 -15.67252 -15.43794 -14.80383 -14.73873 -14.49016 -14.40732 -13.94773 -13.74354 -13.51042 -13.45922 -13.29901 -13.12810 -13.06766 -12.75171 -12.62435 -12.38332 -12.31401 -12.20948 -12.19364 -11.82744 -11.77264 -11.67146 -11.26429 -10.99804 -10.96609 -10.90835 -9.71938 -9.66566 -9.34863 -8.03337 -5.38017 1.38376 1.39709 1.46888 1.48007 1.56442 1.66644 2.01762 2.46968 2.84836 3.23661 3.28589 3.52487 3.63292 3.69505 3.76948 3.83688 3.98592 4.01537 4.05730 4.08802 4.20685 4.24751 4.26107 4.35635 4.44773 4.46253 4.56914 4.63966 4.67556 4.74171 4.77391 4.82916 4.84433 4.88481 4.91790 4.97580 5.15340 5.25009 5.33068 5.39445 5.75978 6.08415 6.19832 6.20085 6.49580 6.99644 7.04002 7.07387 7.79313 7.97078 9.17375 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.028414 B = 0.002044 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.189590 B =13693.199863 C =14159.343896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.061 4.061 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.256 1.256 6 H -0.297 1.297 7 C -0.228 4.228 8 H 0.065 0.935 9 N -0.745 5.745 10 C 0.167 3.833 11 H 0.071 0.929 12 C -0.147 4.147 13 C 0.105 3.895 14 N -0.615 5.615 15 C 0.526 3.474 16 O -0.582 6.582 17 C -0.110 4.110 18 C -0.117 4.117 19 C 0.519 3.481 20 O -0.574 6.574 21 N -0.619 5.619 22 C 0.067 3.933 23 C 0.044 3.956 24 O -0.396 6.396 25 C 0.051 3.949 26 C 0.074 3.926 27 C 0.107 3.893 28 H 0.258 0.742 29 H 0.364 0.636 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.057 0.943 41 H 0.128 0.872 42 H 0.053 0.947 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.887 -12.069 4.234 34.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.252 4.252 3 Si 0.778 3.222 4 H -0.205 1.205 5 H -0.181 1.181 6 H -0.224 1.224 7 C -0.359 4.359 8 H 0.083 0.917 9 N -0.388 5.388 10 C 0.058 3.942 11 H 0.089 0.911 12 C -0.188 4.188 13 C -0.017 4.017 14 N -0.348 5.348 15 C 0.316 3.684 16 O -0.463 6.463 17 C -0.150 4.150 18 C -0.157 4.157 19 C 0.309 3.691 20 O -0.454 6.454 21 N -0.353 5.353 22 C -0.055 4.055 23 C -0.033 4.033 24 O -0.314 6.314 25 C -0.026 4.026 26 C -0.049 4.049 27 C -0.017 4.017 28 H 0.067 0.933 29 H 0.198 0.802 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.075 0.925 41 H 0.146 0.854 42 H 0.071 0.929 43 H 0.143 0.857 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 31.942 -12.200 4.169 34.446 hybrid contribution -0.589 1.301 -0.034 1.429 sum 31.353 -10.899 4.135 33.450 Atomic orbital electron populations 1.69865 1.06954 1.26621 1.59550 1.25438 0.96046 1.01013 1.02751 0.85491 0.78565 0.80186 0.78007 1.20522 1.18100 1.22356 1.18999 0.82079 0.93649 1.41128 0.91661 1.42708 1.02724 1.03357 1.90030 1.21362 0.89500 0.88066 0.95304 0.91146 1.23359 0.97253 0.99769 0.98396 1.22528 0.91170 0.95869 0.92162 1.48623 1.05992 1.45392 1.34799 1.20788 0.80585 0.82356 0.84623 1.90676 1.70193 1.48126 1.37310 1.21299 0.93349 1.00662 0.99703 1.21362 0.93123 1.00956 1.00302 1.20893 0.82134 0.81888 0.84159 1.90693 1.70442 1.47493 1.36732 1.48265 1.06300 1.45961 1.34778 1.22793 0.95763 0.96854 0.90096 1.23228 0.92977 0.90761 0.96383 1.87959 1.38852 1.59152 1.45466 1.23055 0.94231 0.96668 0.88694 1.22373 0.93255 0.93695 0.95530 1.22079 0.89476 0.95056 0.95065 0.93338 0.80198 0.91668 0.89732 0.88258 0.89072 0.87474 0.87168 0.87134 0.87315 0.89163 0.87007 0.92479 0.85404 0.92889 0.85683 0.89026 0.89856 0.91328 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.61 13.97 21.65 0.30 -61.31 16 2 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.95 45.04 27.74 68.60 1.90 46.95 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.26 -11.13 6.52 99.48 0.65 -10.48 16 6 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 7 C -0.23 -12.45 10.45 84.03 0.88 -11.57 16 8 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 9 N -0.75 -33.31 5.04 -317.34 -1.60 -34.91 16 10 C 0.17 5.84 3.59 46.18 0.17 6.00 16 11 H 0.07 2.52 8.11 -2.38 -0.02 2.50 16 12 C -0.15 -4.23 6.77 31.99 0.22 -4.01 16 13 C 0.10 2.24 6.69 86.86 0.58 2.82 16 14 N -0.61 -16.12 3.33 -811.03 -2.70 -18.82 16 15 C 0.53 13.40 7.85 87.66 0.69 14.09 16 16 O -0.58 -18.49 16.31 -3.05 -0.05 -18.54 16 17 C -0.11 -2.02 4.00 29.85 0.12 -1.90 16 18 C -0.12 -1.86 3.36 29.85 0.10 -1.76 16 19 C 0.52 9.35 7.71 87.66 0.68 10.03 16 20 O -0.57 -14.14 15.45 -3.03 -0.05 -14.19 16 21 N -0.62 -8.58 3.01 -816.46 -2.46 -11.04 16 22 C 0.07 0.59 6.57 86.49 0.57 1.15 16 23 C 0.04 0.37 7.00 72.22 0.51 0.87 16 24 O -0.40 -4.98 10.74 -148.98 -1.60 -6.58 16 25 C 0.05 0.51 6.99 72.09 0.50 1.02 16 26 C 0.07 0.91 6.64 86.37 0.57 1.49 16 27 C 0.11 3.38 6.64 86.67 0.58 3.96 16 28 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.36 16.03 5.40 -92.71 -0.50 15.53 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.10 1.68 7.48 -2.39 -0.02 1.66 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.11 1.87 7.80 -2.39 -0.02 1.85 16 35 H 0.11 1.86 8.10 -2.39 -0.02 1.84 16 36 H 0.11 1.60 7.96 -2.39 -0.02 1.58 16 37 H 0.11 1.59 7.63 -2.39 -0.02 1.57 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.11 0.75 6.05 -2.39 -0.01 0.73 16 40 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.09 1.35 7.08 -2.39 -0.02 1.34 16 45 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.05 1.88 7.70 -2.38 -0.02 1.86 16 Total: -1.00 -75.41 377.17 0.78 -74.63 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.41 Total: 24.67 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 6.62 Total: 19.15 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -6.46 Total: -126.09 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.70 Total: -39.31 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.95 kcal Total: -75.41 0.78 -74.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187644188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.924 kcal (2) G-P(sol) polarization free energy of solvation -75.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds