Wall clock time and date at job start Fri Apr 10 2020 18:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 119.99887 * 2 1 4 4 H 1.48502 * 109.47028 * 239.99399 * 3 2 1 5 5 H 1.48497 * 109.47531 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47039 * 120.00146 * 3 2 1 7 7 C 1.38945 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00271 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99634 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72687 * 10 9 7 13 13 N 1.46904 * 109.47192 * 180.28082 * 12 10 9 14 14 C 1.48527 * 111.00161 * 52.60036 * 13 12 10 15 15 C 1.54935 * 103.22844 * 159.72210 * 14 13 12 16 16 H 1.09002 * 110.72154 * 80.94403 * 15 14 13 17 17 O 1.42902 * 110.87816 * 204.15397 * 15 14 13 18 18 C 1.54594 * 102.92096 * 322.58764 * 15 14 13 19 19 H 1.08993 * 110.30963 * 263.03413 * 18 15 14 20 20 N 1.46506 * 110.39007 * 140.91389 * 18 15 14 21 21 C 1.34779 * 119.99790 * 157.78064 * 20 18 15 22 22 O 1.21290 * 119.99698 * 0.02562 * 21 20 18 23 23 C 1.50695 * 120.00217 * 180.02562 * 21 20 18 24 24 C 1.52998 * 109.47385 * 180.02562 * 23 21 20 25 25 C 1.53780 * 113.61134 * 272.49530 * 24 23 21 26 26 C 1.53785 * 87.08200 * 220.01616 * 25 24 23 27 27 C 1.53782 * 87.07991 * 25.43297 * 26 25 24 28 28 C 1.47903 * 111.00038 * 170.00163 * 13 12 10 29 29 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99881 * 0.02562 * 9 7 2 31 31 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 32 32 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 33 33 H 1.09003 * 110.66931 * 278.16000 * 14 13 12 34 34 H 1.09001 * 110.66633 * 41.28520 * 14 13 12 35 35 H 0.96692 * 114.00290 * 293.59170 * 17 15 14 36 36 H 0.96997 * 120.00554 * 337.77805 * 20 18 15 37 37 H 1.09005 * 109.46727 * 300.00264 * 23 21 20 38 38 H 1.09001 * 109.47324 * 59.99415 * 23 21 20 39 39 H 1.09003 * 112.85233 * 43.80399 * 24 23 21 40 40 H 1.08993 * 113.61781 * 334.56477 * 25 24 23 41 41 H 1.09001 * 113.61166 * 105.47192 * 25 24 23 42 42 H 1.08995 * 113.61563 * 270.88819 * 26 25 24 43 43 H 1.08997 * 113.61287 * 139.97688 * 26 25 24 44 44 H 1.08995 * 113.61773 * 220.01660 * 27 26 25 45 45 H 1.09000 * 113.61280 * 89.11196 * 27 26 25 46 46 H 1.09001 * 109.91673 * 333.50350 * 28 13 12 47 47 H 1.08999 * 109.91977 * 94.60341 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0068 13 7 2.1982 -5.9795 0.0123 14 6 3.1842 -5.8315 1.1132 15 6 3.7280 -7.2705 1.2979 16 1 4.4915 -7.4928 0.5524 17 8 4.2440 -7.4545 2.6177 18 6 2.4735 -8.1456 1.0739 19 1 2.0239 -8.4140 2.0298 20 7 2.8210 -9.3526 0.3197 21 6 2.0311 -10.4423 0.3906 22 8 1.0323 -10.4235 1.0785 23 6 2.3888 -11.6840 -0.3847 24 6 1.3357 -12.7645 -0.1315 25 6 1.6275 -13.6314 1.1048 26 6 1.1428 -14.8343 0.2783 27 6 1.5415 -14.0349 -0.9734 28 6 1.5090 -7.2648 0.2581 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 -0.0002 31 1 0.6169 -4.9164 0.8970 32 1 0.6171 -4.9250 -0.8829 33 1 3.9854 -5.1516 0.8234 34 1 2.6950 -5.4853 2.0237 35 1 5.0317 -6.9274 2.8091 36 1 3.6196 -9.3674 -0.2307 37 1 2.4212 -11.4510 -1.4491 38 1 3.3654 -12.0451 -0.0620 39 1 0.3168 -12.3788 -0.1653 40 1 2.6847 -13.6784 1.3655 41 1 0.9896 -13.4029 1.9586 42 1 0.0708 -15.0151 0.3577 43 1 1.7374 -15.7353 0.4287 44 1 0.8345 -14.1321 -1.7972 45 1 2.5754 -14.1921 -1.2808 46 1 0.5939 -7.0930 0.8247 47 1 1.2733 -7.7472 -0.6904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192022216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:54 Heat of formation + Delta-G solvation = -93.106934 kcal Electronic energy + Delta-G solvation = -27536.382061 eV Core-core repulsion = 23526.805569 eV Total energy + Delta-G solvation = -4009.576492 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44642 -39.43940 -38.42580 -37.69455 -35.77494 -34.46079 -33.83555 -31.41490 -31.17252 -29.74532 -27.93303 -26.44744 -25.87702 -24.41126 -23.71733 -21.61541 -20.91460 -20.35404 -19.64285 -19.29400 -17.95802 -17.60669 -17.21690 -16.38819 -16.08809 -15.83430 -15.42061 -14.97168 -14.87034 -14.71118 -14.62483 -14.14027 -13.82241 -13.77552 -13.37779 -13.09072 -12.97412 -12.74028 -12.49397 -12.44374 -12.15408 -12.11043 -11.73285 -11.67674 -11.57463 -11.33862 -11.01279 -10.93890 -10.65768 -10.58616 -10.47800 -10.44858 -10.26110 -10.16160 -9.80204 -9.52195 -9.23967 -8.45924 -8.08482 -7.96818 -6.46071 -3.87422 2.53255 2.97557 3.16587 3.23201 3.26938 3.80237 3.84234 4.11470 4.24778 4.33577 4.36091 4.40698 4.52701 4.57673 4.78288 4.87240 5.00336 5.05069 5.12196 5.18695 5.21189 5.28879 5.36610 5.41028 5.43561 5.45808 5.59843 5.64076 5.69642 5.78645 5.80241 5.84400 5.88262 5.98441 6.08746 6.20153 6.23736 6.37175 6.48636 7.03069 7.15002 7.36632 7.50537 7.56688 8.00322 8.11385 8.55756 9.12445 9.48191 9.99097 10.71305 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.031462 B = 0.002040 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.750818 B =13718.911028 C =14206.799668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.559 5.559 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.035 3.965 13 N -0.491 5.491 14 C 0.010 3.990 15 C 0.091 3.909 16 H 0.075 0.925 17 O -0.563 6.563 18 C 0.143 3.857 19 H 0.103 0.897 20 N -0.720 5.720 21 C 0.513 3.487 22 O -0.538 6.538 23 C -0.132 4.132 24 C -0.095 4.095 25 C -0.135 4.135 26 C -0.143 4.143 27 C -0.138 4.138 28 C 0.027 3.973 29 H 0.273 0.727 30 H 0.393 0.607 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.049 0.951 35 H 0.384 0.616 36 H 0.401 0.599 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -24.276 -0.583 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.195 5.195 10 C 0.227 3.773 11 O -0.469 6.469 12 C -0.096 4.096 13 N -0.216 5.216 14 C -0.118 4.118 15 C 0.031 3.969 16 H 0.093 0.907 17 O -0.368 6.368 18 C 0.038 3.962 19 H 0.120 0.880 20 N -0.372 5.372 21 C 0.300 3.700 22 O -0.414 6.414 23 C -0.172 4.172 24 C -0.113 4.113 25 C -0.173 4.173 26 C -0.181 4.181 27 C -0.176 4.176 28 C -0.102 4.102 29 H 0.083 0.917 30 H 0.226 0.774 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.143 0.857 34 H 0.067 0.933 35 H 0.232 0.768 36 H 0.235 0.765 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.072 0.928 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.924 -24.492 -0.540 24.810 hybrid contribution 0.094 1.396 0.393 1.453 sum 4.018 -23.096 -0.147 23.443 Atomic orbital electron populations 1.69608 1.05965 1.28385 1.50082 1.25285 0.95648 0.99803 0.97145 0.85900 0.78762 0.80382 0.79064 1.19857 1.20941 1.19901 1.19650 0.93336 0.82160 1.47963 0.87897 1.41847 1.09265 1.04568 1.63791 1.19660 0.88308 0.84625 0.84697 1.90411 1.13717 1.86742 1.56079 1.22135 0.94517 0.91041 1.01923 1.64584 1.13463 1.00380 1.43168 1.24128 0.98599 0.95931 0.93126 1.23018 0.94628 0.94827 0.84476 0.90748 1.86459 1.49150 1.69903 1.31291 1.21670 0.94634 0.84154 0.95760 0.87952 1.46081 1.28499 1.13092 1.49539 1.20742 0.83148 0.84328 0.81769 1.90706 1.26379 1.83504 1.40820 1.21713 1.00923 0.93364 1.01178 1.22346 0.99657 0.92516 0.96827 1.22949 1.01293 0.95712 0.97317 1.22798 1.01290 0.97233 0.96745 1.22987 1.01719 0.95912 0.96975 1.23351 0.96034 0.90897 0.99960 0.91724 0.77375 0.93037 0.88963 0.85729 0.93270 0.76824 0.76450 0.88656 0.88889 0.88158 0.90410 0.91235 0.90224 0.91589 0.91419 0.90105 0.92771 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.28 13.05 55.50 0.72 -23.55 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.98 5.29 -10.96 -0.06 -14.03 16 10 C 0.44 10.18 7.49 -10.98 -0.08 10.10 16 11 O -0.58 -14.91 13.09 5.55 0.07 -14.84 16 12 C 0.04 0.64 5.52 -4.97 -0.03 0.61 16 13 N -0.49 -8.10 5.26 -231.89 -1.22 -9.32 16 14 C 0.01 0.17 5.03 -1.90 -0.01 0.16 16 15 C 0.09 1.15 4.14 -24.87 -0.10 1.05 16 16 H 0.07 0.83 7.74 -51.93 -0.40 0.43 16 17 O -0.56 -6.93 13.41 -35.23 -0.47 -7.40 16 18 C 0.14 1.86 3.06 -66.57 -0.20 1.66 16 19 H 0.10 1.55 7.58 -51.93 -0.39 1.16 16 20 N -0.72 -7.48 5.03 -52.49 -0.26 -7.74 16 21 C 0.51 5.74 7.82 -10.99 -0.09 5.65 16 22 O -0.54 -8.15 15.45 5.55 0.09 -8.06 16 23 C -0.13 -0.98 5.54 -27.89 -0.15 -1.13 16 24 C -0.09 -0.78 3.15 -89.81 -0.28 -1.06 16 25 C -0.14 -1.10 7.63 -25.92 -0.20 -1.29 16 26 C -0.14 -0.96 8.08 -25.92 -0.21 -1.17 16 27 C -0.14 -0.88 7.64 -25.92 -0.20 -1.07 16 28 C 0.03 0.38 6.48 -2.75 -0.02 0.36 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 31 H 0.05 0.87 7.81 -51.92 -0.41 0.47 16 32 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.12 2.33 5.97 -51.93 -0.31 2.02 16 34 H 0.05 0.85 8.02 -51.93 -0.42 0.44 16 35 H 0.38 3.24 9.12 45.56 0.42 3.65 16 36 H 0.40 3.11 8.35 -40.82 -0.34 2.77 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.54 7.85 -51.93 -0.41 0.13 16 39 H 0.10 1.00 7.68 -51.93 -0.40 0.61 16 40 H 0.08 0.57 7.90 -51.93 -0.41 0.16 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 46 H 0.05 0.78 7.57 -51.93 -0.39 0.39 16 47 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 382.05 15.07 5.76 5.76 Total: -1.00 -32.85 382.05 -8.87 -41.72 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -6.66 Total: 15.75 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -1.81 Total: 5.97 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.82 Total: -54.65 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.31 Total: -30.30 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.85 -8.87 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192022216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.387 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds