Wall clock time and date at job start Fri Apr 10 2020 18:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 119.99887 * 2 1 4 4 H 1.48502 * 109.47028 * 239.99399 * 3 2 1 5 5 H 1.48497 * 109.47531 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47039 * 120.00146 * 3 2 1 7 7 C 1.38945 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00271 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99634 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72687 * 10 9 7 13 13 N 1.46904 * 109.47192 * 180.28082 * 12 10 9 14 14 C 1.48527 * 111.00161 * 52.60036 * 13 12 10 15 15 C 1.54935 * 103.22844 * 159.72210 * 14 13 12 16 16 H 1.09002 * 110.72154 * 80.94403 * 15 14 13 17 17 O 1.42902 * 110.87816 * 204.15397 * 15 14 13 18 18 C 1.54594 * 102.92096 * 322.58764 * 15 14 13 19 19 H 1.08993 * 110.30963 * 263.03413 * 18 15 14 20 20 N 1.46506 * 110.39007 * 140.91389 * 18 15 14 21 21 C 1.34779 * 119.99790 * 157.78064 * 20 18 15 22 22 O 1.21290 * 119.99698 * 0.02562 * 21 20 18 23 23 C 1.50695 * 120.00217 * 180.02562 * 21 20 18 24 24 C 1.52998 * 109.47385 * 180.02562 * 23 21 20 25 25 C 1.53780 * 113.61134 * 272.49530 * 24 23 21 26 26 C 1.53785 * 87.08200 * 220.01616 * 25 24 23 27 27 C 1.53782 * 87.07991 * 25.43297 * 26 25 24 28 28 C 1.47903 * 111.00038 * 170.00163 * 13 12 10 29 29 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99881 * 0.02562 * 9 7 2 31 31 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 32 32 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 33 33 H 1.09003 * 110.66931 * 278.16000 * 14 13 12 34 34 H 1.09001 * 110.66633 * 41.28520 * 14 13 12 35 35 H 0.96692 * 114.00290 * 293.59170 * 17 15 14 36 36 H 0.96997 * 120.00554 * 337.77805 * 20 18 15 37 37 H 1.09005 * 109.46727 * 300.00264 * 23 21 20 38 38 H 1.09001 * 109.47324 * 59.99415 * 23 21 20 39 39 H 1.09003 * 112.85233 * 43.80399 * 24 23 21 40 40 H 1.08993 * 113.61781 * 334.56477 * 25 24 23 41 41 H 1.09001 * 113.61166 * 105.47192 * 25 24 23 42 42 H 1.08995 * 113.61563 * 270.88819 * 26 25 24 43 43 H 1.08997 * 113.61287 * 139.97688 * 26 25 24 44 44 H 1.08995 * 113.61773 * 220.01660 * 27 26 25 45 45 H 1.09000 * 113.61280 * 89.11196 * 27 26 25 46 46 H 1.09001 * 109.91673 * 333.50350 * 28 13 12 47 47 H 1.08999 * 109.91977 * 94.60341 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0068 13 7 2.1982 -5.9795 0.0123 14 6 3.1842 -5.8315 1.1132 15 6 3.7280 -7.2705 1.2979 16 1 4.4915 -7.4928 0.5524 17 8 4.2440 -7.4545 2.6177 18 6 2.4735 -8.1456 1.0739 19 1 2.0239 -8.4140 2.0298 20 7 2.8210 -9.3526 0.3197 21 6 2.0311 -10.4423 0.3906 22 8 1.0323 -10.4235 1.0785 23 6 2.3888 -11.6840 -0.3847 24 6 1.3357 -12.7645 -0.1315 25 6 1.6275 -13.6314 1.1048 26 6 1.1428 -14.8343 0.2783 27 6 1.5415 -14.0349 -0.9734 28 6 1.5090 -7.2648 0.2581 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 -0.0002 31 1 0.6169 -4.9164 0.8970 32 1 0.6171 -4.9250 -0.8829 33 1 3.9854 -5.1516 0.8234 34 1 2.6950 -5.4853 2.0237 35 1 5.0317 -6.9274 2.8091 36 1 3.6196 -9.3674 -0.2307 37 1 2.4212 -11.4510 -1.4491 38 1 3.3654 -12.0451 -0.0620 39 1 0.3168 -12.3788 -0.1653 40 1 2.6847 -13.6784 1.3655 41 1 0.9896 -13.4029 1.9586 42 1 0.0708 -15.0151 0.3577 43 1 1.7374 -15.7353 0.4287 44 1 0.8345 -14.1321 -1.7972 45 1 2.5754 -14.1921 -1.2808 46 1 0.5939 -7.0930 0.8247 47 1 1.2733 -7.7472 -0.6904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192022216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:53 Heat of formation + Delta-G solvation = -120.665637 kcal Electronic energy + Delta-G solvation = -27537.577096 eV Core-core repulsion = 23526.805569 eV Total energy + Delta-G solvation = -4010.771527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45355 -40.60140 -39.62432 -38.84312 -36.94567 -35.99974 -35.31079 -33.33848 -32.13441 -30.82717 -29.10334 -27.98482 -26.42578 -26.06199 -24.52007 -22.86147 -21.91615 -21.36339 -21.06381 -20.21581 -19.89120 -18.68744 -18.09850 -17.82065 -17.30414 -16.73304 -16.58159 -16.38730 -16.25275 -15.92439 -15.67781 -15.45820 -15.22721 -14.93227 -14.52438 -14.38831 -14.03189 -13.83673 -13.61973 -13.51976 -13.39065 -13.25806 -13.03301 -12.87808 -12.76113 -12.61677 -12.44192 -12.28383 -12.13866 -11.79986 -11.49736 -11.47341 -11.25119 -11.15524 -11.03383 -10.72271 -10.31839 -10.10909 -10.02832 -9.47868 -8.47835 -5.96956 1.39068 1.41575 1.52528 1.67499 2.00167 2.11162 2.26742 2.62364 3.08661 3.18556 3.28294 3.56399 3.61821 3.78022 3.79947 3.85710 3.98113 4.03050 4.12308 4.18147 4.25401 4.32284 4.41028 4.46906 4.51065 4.58607 4.63702 4.76849 4.78418 4.81653 4.90713 4.94782 5.05638 5.09043 5.12484 5.20303 5.39606 5.42868 5.44546 5.67365 5.69506 5.78536 6.01548 6.56691 6.57214 6.74564 7.10084 7.28803 7.52236 8.06562 8.69266 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.031462 B = 0.002040 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.750818 B =13718.911028 C =14206.799668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.083 0.917 9 N -0.571 5.571 10 C 0.441 3.559 11 O -0.610 6.610 12 C 0.044 3.956 13 N -0.496 5.496 14 C 0.011 3.989 15 C 0.108 3.892 16 H 0.098 0.902 17 O -0.572 6.572 18 C 0.150 3.850 19 H 0.080 0.920 20 N -0.709 5.709 21 C 0.509 3.491 22 O -0.583 6.583 23 C -0.123 4.123 24 C -0.103 4.103 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.126 4.126 28 C 0.032 3.968 29 H 0.278 0.722 30 H 0.395 0.605 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.031 0.969 35 H 0.401 0.599 36 H 0.417 0.583 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.050 0.950 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -25.629 -1.644 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.101 0.899 9 N -0.208 5.208 10 C 0.229 3.771 11 O -0.497 6.497 12 C -0.087 4.087 13 N -0.222 5.222 14 C -0.117 4.117 15 C 0.047 3.953 16 H 0.116 0.884 17 O -0.380 6.380 18 C 0.043 3.957 19 H 0.098 0.902 20 N -0.362 5.362 21 C 0.298 3.702 22 O -0.463 6.463 23 C -0.162 4.162 24 C -0.121 4.121 25 C -0.179 4.179 26 C -0.180 4.180 27 C -0.163 4.163 28 C -0.097 4.097 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.049 0.951 35 H 0.251 0.749 36 H 0.255 0.745 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.068 0.932 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.116 -25.864 -1.616 26.415 hybrid contribution -0.261 1.760 0.768 1.938 sum 4.855 -24.104 -0.848 24.603 Atomic orbital electron populations 1.69679 1.06945 1.29402 1.50141 1.26084 0.96540 1.02571 0.96218 0.84958 0.77711 0.76483 0.79010 1.19547 1.19706 1.19629 1.19657 0.92817 0.83772 1.49975 0.89855 1.41923 1.09330 1.04737 1.64793 1.20523 0.88292 0.85723 0.82611 1.90406 1.15179 1.87486 1.56587 1.22045 0.94372 0.88844 1.03439 1.64580 1.13464 1.00721 1.43423 1.23985 0.97726 0.97898 0.92093 1.22841 0.94950 0.92087 0.85381 0.88385 1.86435 1.50247 1.70238 1.31058 1.21395 0.94376 0.84981 0.94962 0.90202 1.45960 1.29002 1.12027 1.49171 1.21478 0.82283 0.85223 0.81189 1.90696 1.28436 1.84290 1.42873 1.21764 1.01584 0.90937 1.01926 1.22325 0.98661 0.93542 0.97617 1.23010 1.01489 0.96768 0.96675 1.22803 1.01227 0.97264 0.96684 1.22957 1.02919 0.93935 0.96515 1.23350 0.95969 0.89788 1.00580 0.91304 0.77112 0.91769 0.87030 0.88320 0.95097 0.74866 0.74524 0.86198 0.86365 0.90759 0.89327 0.93655 0.90743 0.90386 0.91034 0.88208 0.93214 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 2 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 3 Si 0.99 42.46 29.55 68.60 2.03 44.49 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.33 -18.62 9.68 84.04 0.81 -17.80 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.57 -29.14 5.29 -306.98 -1.62 -30.76 16 10 C 0.44 20.66 7.49 87.66 0.66 21.31 16 11 O -0.61 -31.84 13.09 -3.07 -0.04 -31.88 16 12 C 0.04 1.58 5.52 85.56 0.47 2.06 16 13 N -0.50 -16.05 5.26 -887.56 -4.67 -20.72 16 14 C 0.01 0.37 5.03 86.65 0.44 0.81 16 15 C 0.11 2.59 4.14 31.80 0.13 2.72 16 16 H 0.10 1.93 7.74 -2.39 -0.02 1.92 16 17 O -0.57 -13.34 13.41 -148.98 -2.00 -15.34 16 18 C 0.15 3.72 3.06 45.87 0.14 3.87 16 19 H 0.08 2.42 7.58 -2.39 -0.02 2.40 16 20 N -0.71 -13.22 5.03 -438.36 -2.21 -15.42 16 21 C 0.51 10.62 7.82 87.65 0.69 11.31 16 22 O -0.58 -17.73 15.45 -3.06 -0.05 -17.77 16 23 C -0.12 -1.49 5.54 29.85 0.17 -1.32 16 24 C -0.10 -1.54 3.15 -10.27 -0.03 -1.57 16 25 C -0.14 -2.18 7.63 31.12 0.24 -1.94 16 26 C -0.14 -1.70 8.08 31.12 0.25 -1.44 16 27 C -0.13 -1.27 7.64 31.12 0.24 -1.04 16 28 C 0.03 0.87 6.48 86.45 0.56 1.43 16 29 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.40 19.41 7.90 -92.71 -0.73 18.67 16 31 H 0.06 2.15 7.81 -2.38 -0.02 2.13 16 32 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.10 3.75 5.97 -2.39 -0.01 3.73 16 34 H 0.03 1.09 8.02 -2.39 -0.02 1.08 16 35 H 0.40 6.20 9.12 -74.06 -0.68 5.53 16 36 H 0.42 5.12 8.35 -92.71 -0.77 4.34 16 37 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.12 0.89 7.85 -2.39 -0.02 0.87 16 39 H 0.07 1.51 7.68 -2.39 -0.02 1.49 16 40 H 0.09 1.14 7.90 -2.39 -0.02 1.12 16 41 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.10 0.67 8.10 -2.39 -0.02 0.65 16 46 H 0.05 1.40 7.57 -2.39 -0.02 1.38 16 47 H 0.09 2.38 7.93 -2.39 -0.02 2.37 16 Total: -1.00 -72.66 382.05 -4.22 -76.88 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -1.17 Total: 41.86 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 5.22 Total: 18.09 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -8.21 Total: -116.34 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -2.08 Total: -64.98 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -72.66 -4.22 -76.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192022216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.786 kcal (2) G-P(sol) polarization free energy of solvation -72.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds