Wall clock time and date at job start Fri Apr 10 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99929 * 2 1 4 4 H 1.48506 * 109.46812 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47102 * 300.00141 * 3 2 1 6 6 H 1.48494 * 109.47209 * 60.00257 * 3 2 1 7 7 C 1.38949 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99635 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00483 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00314 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00169 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00214 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47059 * 174.56232 * 12 10 9 14 14 C 1.46265 * 111.00026 * 65.00396 * 13 12 10 15 15 C 1.47541 * 114.37443 * 148.54962 * 14 13 12 16 16 C 1.54951 * 109.73260 * 62.21882 * 15 14 13 17 17 N 1.44679 * 109.52161 * 290.52227 * 16 15 14 18 18 C 1.34769 * 118.54728 * 269.09517 * 17 16 15 19 19 O 1.21284 * 120.00353 * 4.93568 * 18 17 16 20 20 C 1.50703 * 120.00183 * 184.93020 * 18 17 16 21 21 H 1.09004 * 110.32657 * 45.83834 * 20 18 17 22 22 C 1.54480 * 110.37239 * 283.59031 * 20 18 17 23 23 C 1.54512 * 104.05995 * 217.18881 * 22 20 18 24 24 C 1.54476 * 104.06395 * 359.97438 * 23 22 20 25 25 O 1.44422 * 110.37261 * 168.08846 * 20 18 17 26 26 C 1.47781 * 122.90609 * 89.08334 * 17 16 15 27 27 C 1.44762 * 111.00200 * 301.50904 * 13 12 10 28 28 H 0.97002 * 120.00030 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99957 * 0.02562 * 9 7 2 30 30 H 1.09006 * 109.46812 * 294.55861 * 12 10 9 31 31 H 1.08996 * 109.47375 * 54.56207 * 12 10 9 32 32 H 1.08997 * 108.50219 * 269.81425 * 14 13 12 33 33 H 1.08998 * 108.50257 * 27.28632 * 14 13 12 34 34 H 1.08996 * 109.43116 * 182.29568 * 15 14 13 35 35 H 1.09000 * 109.42960 * 302.19659 * 15 14 13 36 36 H 1.09005 * 109.45856 * 50.53710 * 16 15 14 37 37 H 1.08997 * 109.46251 * 170.51880 * 16 15 14 38 38 H 1.09005 * 110.51007 * 335.82695 * 22 20 18 39 39 H 1.08995 * 110.51240 * 98.54122 * 22 20 18 40 40 H 1.08998 * 110.50972 * 118.64012 * 23 22 20 41 41 H 1.08993 * 110.50745 * 241.21422 * 23 22 20 42 42 H 1.09001 * 110.37320 * 142.81295 * 24 23 22 43 43 H 1.09005 * 110.36759 * 265.14982 * 24 23 22 44 44 H 1.09001 * 109.06856 * 78.63690 * 26 17 16 45 45 H 1.08994 * 109.06328 * 197.57930 * 26 17 16 46 46 H 1.09003 * 109.43258 * 337.92977 * 27 13 12 47 47 H 1.09000 * 109.43378 * 97.79537 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 7 2.1930 -5.9764 -0.1323 14 6 3.0706 -6.0572 1.0350 15 6 3.5074 -7.4248 1.3749 16 6 4.3357 -8.0151 0.2059 17 7 3.4676 -8.2640 -0.9244 18 6 2.8849 -9.4742 -1.0348 19 8 3.0206 -10.2954 -0.1526 20 6 2.0645 -9.8071 -2.2543 21 1 2.5901 -9.5017 -3.1591 22 6 0.6830 -9.1202 -2.1770 23 6 -0.2866 -10.1575 -2.7863 24 6 0.6240 -11.3481 -3.1602 25 8 1.7745 -11.2213 -2.2944 26 6 3.1914 -7.2498 -1.9631 27 6 2.9701 -5.8552 -1.3476 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6917 -4.9643 0.9334 31 1 0.5463 -4.8796 -0.8386 32 1 3.9549 -5.4487 0.8458 33 1 2.5444 -5.6389 1.8931 34 1 4.1207 -7.3963 2.2755 35 1 2.6332 -8.0514 1.5513 36 1 5.1131 -7.3073 -0.0820 37 1 4.7959 -8.9509 0.5232 38 1 0.4174 -8.9120 -1.1405 39 1 0.6793 -8.2025 -2.7650 40 1 -1.0314 -10.4621 -2.0511 41 1 -0.7714 -9.7517 -3.6741 42 1 0.1108 -12.2915 -2.9738 43 1 0.9274 -11.2802 -4.2050 44 1 4.0358 -7.2053 -2.6509 45 1 2.2982 -7.5406 -2.5160 46 1 2.4353 -5.2255 -2.0587 47 1 3.9348 -5.4030 -1.1176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194732166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:07 Heat of formation + Delta-G solvation = -95.108611 kcal Electronic energy + Delta-G solvation = -29238.379970 eV Core-core repulsion = 25228.716679 eV Total energy + Delta-G solvation = -4009.663291 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.72463 -39.43269 -38.47650 -37.00287 -34.86190 -33.85270 -33.11900 -32.17779 -31.38825 -29.93207 -29.17154 -26.57505 -25.69345 -24.12478 -23.80524 -22.05338 -21.58874 -20.64788 -19.28492 -18.98150 -17.97152 -17.61563 -16.82302 -16.28850 -15.95485 -15.52376 -15.49595 -15.17947 -14.98942 -14.59251 -14.45355 -13.98662 -13.92802 -13.77161 -13.63135 -13.11898 -13.01784 -12.91398 -12.36156 -12.05104 -12.01487 -11.78999 -11.67016 -11.61793 -11.52952 -11.23935 -11.04769 -10.98018 -10.89424 -10.64296 -10.43665 -10.36831 -10.32274 -10.16842 -9.61779 -9.52165 -9.18419 -8.52277 -8.08309 -7.66232 -6.52423 -3.93936 2.60854 2.83315 3.07600 3.19671 3.25996 3.75907 3.82992 4.07742 4.15243 4.27859 4.44471 4.62412 4.76802 4.88241 4.89273 4.95580 5.06754 5.10568 5.14240 5.19747 5.30745 5.33377 5.40968 5.43944 5.55042 5.63849 5.70302 5.75696 5.79313 5.83971 5.86025 5.94508 6.02028 6.05672 6.13896 6.29630 6.36686 6.45735 6.60175 6.75300 7.25411 7.40298 7.43574 7.44615 7.93733 8.24600 8.47889 9.05990 9.41895 9.91637 10.64236 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002892 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.535768 B = 9679.821703 C =10448.007043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.557 5.557 10 C 0.405 3.595 11 O -0.597 6.597 12 C 0.044 3.956 13 N -0.507 5.507 14 C 0.054 3.946 15 C -0.128 4.128 16 C 0.121 3.879 17 N -0.587 5.587 18 C 0.519 3.481 19 O -0.528 6.528 20 C 0.058 3.942 21 H 0.089 0.911 22 C -0.140 4.140 23 C -0.154 4.154 24 C 0.042 3.958 25 O -0.348 6.348 26 C 0.106 3.894 27 C 0.047 3.953 28 H 0.272 0.728 29 H 0.393 0.607 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 -16.310 -6.563 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.192 5.192 10 C 0.190 3.810 11 O -0.483 6.483 12 C -0.087 4.087 13 N -0.229 5.229 14 C -0.073 4.073 15 C -0.167 4.167 16 C -0.002 4.002 17 N -0.320 5.320 18 C 0.306 3.694 19 O -0.404 6.404 20 C -0.003 4.003 21 H 0.106 0.894 22 C -0.178 4.178 23 C -0.191 4.191 24 C -0.035 4.035 25 O -0.266 6.266 26 C -0.017 4.017 27 C -0.083 4.083 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.517 -17.175 -5.996 18.198 hybrid contribution -0.046 2.072 -0.110 2.075 sum 0.471 -15.103 -6.106 16.297 Atomic orbital electron populations 1.69613 1.05971 1.28245 1.50016 1.25287 0.95624 0.99836 0.97060 0.85815 0.79689 0.81116 0.77818 1.19250 1.20666 1.20666 1.19747 0.93364 0.82346 1.47721 0.87947 1.42026 1.09299 1.04921 1.62950 1.21041 0.88898 0.85980 0.85084 1.90487 1.13795 1.87160 1.56896 1.22228 0.95164 0.87994 1.03347 1.61291 1.18670 1.40395 1.02522 1.20973 0.97395 0.96119 0.92845 1.21351 1.00483 0.97290 0.97570 1.21443 0.91903 1.01043 0.85816 1.47473 1.46916 1.12080 1.25571 1.20149 0.79670 0.82054 0.87557 1.90691 1.60039 1.48528 1.41146 1.22892 0.96641 0.83743 0.97042 0.89374 1.22927 0.92382 0.98772 1.03726 1.22949 0.98775 0.95709 1.01716 1.23498 0.86369 0.99476 0.94170 1.89278 1.47832 1.21214 1.68304 1.22389 1.00908 0.89071 0.89334 1.22284 0.99438 0.93790 0.92755 0.91777 0.77398 0.89378 0.89415 0.91974 0.92407 0.90759 0.91336 0.90782 0.90227 0.89508 0.89278 0.90359 0.90135 0.88791 0.92078 0.91678 0.90030 0.90528 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.60 13.05 55.50 0.72 -22.87 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.03 9.68 -14.93 -0.14 -8.18 16 8 H 0.10 2.88 7.16 -52.48 -0.38 2.50 16 9 N -0.56 -13.25 5.29 -10.96 -0.06 -13.30 16 10 C 0.40 8.64 7.07 -10.99 -0.08 8.57 16 11 O -0.60 -14.32 12.14 5.54 0.07 -14.25 16 12 C 0.04 0.71 5.49 -4.97 -0.03 0.69 16 13 N -0.51 -7.55 4.37 -241.04 -1.05 -8.60 16 14 C 0.05 0.84 4.02 -6.80 -0.03 0.82 16 15 C -0.13 -1.73 6.02 -28.33 -0.17 -1.90 16 16 C 0.12 1.57 5.40 -3.99 -0.02 1.54 16 17 N -0.59 -7.50 2.53 -172.21 -0.44 -7.93 16 18 C 0.52 7.43 6.84 -10.99 -0.08 7.36 16 19 O -0.53 -9.61 16.05 -13.34 -0.21 -9.83 16 20 C 0.06 0.66 2.72 -27.10 -0.07 0.59 16 21 H 0.09 0.82 7.53 -51.93 -0.39 0.42 16 22 C -0.14 -1.33 5.80 -25.16 -0.15 -1.48 16 23 C -0.15 -1.20 7.09 -25.16 -0.18 -1.38 16 24 C 0.04 0.36 7.63 37.93 0.29 0.65 16 25 O -0.35 -4.57 10.95 -54.12 -0.59 -5.16 16 26 C 0.11 1.17 6.05 -2.80 -0.02 1.15 16 27 C 0.05 0.66 4.25 -4.43 -0.02 0.64 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.39 9.02 7.90 -40.82 -0.32 8.70 16 30 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 31 H 0.09 1.26 8.09 -51.93 -0.42 0.84 16 32 H 0.06 1.11 5.85 -51.93 -0.30 0.80 16 33 H 0.06 0.95 7.53 -51.93 -0.39 0.55 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.08 1.06 7.32 -51.93 -0.38 0.68 16 38 H 0.09 0.99 7.87 -51.93 -0.41 0.58 16 39 H 0.09 0.70 6.70 -51.93 -0.35 0.35 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.76 4.08 -51.93 -0.21 0.55 16 46 H 0.08 1.10 7.46 -51.93 -0.39 0.71 16 47 H 0.07 1.13 6.19 -51.93 -0.32 0.81 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -32.17 363.78 -9.07 -41.25 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.19 Total: 10.29 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -0.78 Total: 9.59 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.82 Total: -52.71 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.74 Total: -29.24 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.17 -9.07 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194732166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.861 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds