Wall clock time and date at job start Fri Apr 10 2020 18:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99929 * 2 1 4 4 H 1.48506 * 109.46812 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47102 * 300.00141 * 3 2 1 6 6 H 1.48494 * 109.47209 * 60.00257 * 3 2 1 7 7 C 1.38949 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99635 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00483 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00314 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00169 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00214 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47059 * 174.56232 * 12 10 9 14 14 C 1.46265 * 111.00026 * 65.00396 * 13 12 10 15 15 C 1.47541 * 114.37443 * 148.54962 * 14 13 12 16 16 C 1.54951 * 109.73260 * 62.21882 * 15 14 13 17 17 N 1.44679 * 109.52161 * 290.52227 * 16 15 14 18 18 C 1.34769 * 118.54728 * 269.09517 * 17 16 15 19 19 O 1.21284 * 120.00353 * 4.93568 * 18 17 16 20 20 C 1.50703 * 120.00183 * 184.93020 * 18 17 16 21 21 H 1.09004 * 110.32657 * 45.83834 * 20 18 17 22 22 C 1.54480 * 110.37239 * 283.59031 * 20 18 17 23 23 C 1.54512 * 104.05995 * 217.18881 * 22 20 18 24 24 C 1.54476 * 104.06395 * 359.97438 * 23 22 20 25 25 O 1.44422 * 110.37261 * 168.08846 * 20 18 17 26 26 C 1.47781 * 122.90609 * 89.08334 * 17 16 15 27 27 C 1.44762 * 111.00200 * 301.50904 * 13 12 10 28 28 H 0.97002 * 120.00030 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99957 * 0.02562 * 9 7 2 30 30 H 1.09006 * 109.46812 * 294.55861 * 12 10 9 31 31 H 1.08996 * 109.47375 * 54.56207 * 12 10 9 32 32 H 1.08997 * 108.50219 * 269.81425 * 14 13 12 33 33 H 1.08998 * 108.50257 * 27.28632 * 14 13 12 34 34 H 1.08996 * 109.43116 * 182.29568 * 15 14 13 35 35 H 1.09000 * 109.42960 * 302.19659 * 15 14 13 36 36 H 1.09005 * 109.45856 * 50.53710 * 16 15 14 37 37 H 1.08997 * 109.46251 * 170.51880 * 16 15 14 38 38 H 1.09005 * 110.51007 * 335.82695 * 22 20 18 39 39 H 1.08995 * 110.51240 * 98.54122 * 22 20 18 40 40 H 1.08998 * 110.50972 * 118.64012 * 23 22 20 41 41 H 1.08993 * 110.50745 * 241.21422 * 23 22 20 42 42 H 1.09001 * 110.37320 * 142.81295 * 24 23 22 43 43 H 1.09005 * 110.36759 * 265.14982 * 24 23 22 44 44 H 1.09001 * 109.06856 * 78.63690 * 26 17 16 45 45 H 1.08994 * 109.06328 * 197.57930 * 26 17 16 46 46 H 1.09003 * 109.43258 * 337.92977 * 27 13 12 47 47 H 1.09000 * 109.43378 * 97.79537 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 7 2.1930 -5.9764 -0.1323 14 6 3.0706 -6.0572 1.0350 15 6 3.5074 -7.4248 1.3749 16 6 4.3357 -8.0151 0.2059 17 7 3.4676 -8.2640 -0.9244 18 6 2.8849 -9.4742 -1.0348 19 8 3.0206 -10.2954 -0.1526 20 6 2.0645 -9.8071 -2.2543 21 1 2.5901 -9.5017 -3.1591 22 6 0.6830 -9.1202 -2.1770 23 6 -0.2866 -10.1575 -2.7863 24 6 0.6240 -11.3481 -3.1602 25 8 1.7745 -11.2213 -2.2944 26 6 3.1914 -7.2498 -1.9631 27 6 2.9701 -5.8552 -1.3476 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.6917 -4.9643 0.9334 31 1 0.5463 -4.8796 -0.8386 32 1 3.9549 -5.4487 0.8458 33 1 2.5444 -5.6389 1.8931 34 1 4.1207 -7.3963 2.2755 35 1 2.6332 -8.0514 1.5513 36 1 5.1131 -7.3073 -0.0820 37 1 4.7959 -8.9509 0.5232 38 1 0.4174 -8.9120 -1.1405 39 1 0.6793 -8.2025 -2.7650 40 1 -1.0314 -10.4621 -2.0511 41 1 -0.7714 -9.7517 -3.6741 42 1 0.1108 -12.2915 -2.9738 43 1 0.9274 -11.2802 -4.2050 44 1 4.0358 -7.2053 -2.6509 45 1 2.2982 -7.5406 -2.5160 46 1 2.4353 -5.2255 -2.0587 47 1 3.9348 -5.4030 -1.1176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194732166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:06 Heat of formation + Delta-G solvation = -118.195910 kcal Electronic energy + Delta-G solvation = -29239.381111 eV Core-core repulsion = 25228.716679 eV Total energy + Delta-G solvation = -4010.664431 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.77201 -40.76486 -39.59296 -38.39533 -36.26283 -35.54653 -34.24087 -33.29586 -32.95901 -30.80821 -30.40280 -27.90254 -27.01693 -25.69874 -24.69826 -23.02308 -22.36421 -21.97092 -20.89546 -20.06921 -19.78978 -18.59916 -18.00954 -17.57107 -17.04597 -16.82448 -16.55216 -16.43866 -16.13325 -15.95601 -15.80213 -15.47815 -15.25324 -14.88321 -14.65174 -14.43624 -14.20591 -13.95964 -13.71150 -13.48706 -13.29255 -12.98263 -12.88578 -12.67112 -12.57123 -12.42114 -12.34623 -12.21547 -12.14402 -12.04219 -11.86703 -11.67868 -11.57988 -11.40973 -10.98424 -10.84465 -10.55010 -10.00599 -9.60062 -9.13855 -8.46751 -5.95882 1.34281 1.40853 1.53574 1.55191 1.86448 2.03252 2.28124 2.88686 3.09631 3.20322 3.25740 3.41212 3.67684 3.87549 3.91247 4.02534 4.05799 4.07911 4.20129 4.24092 4.28762 4.38547 4.43493 4.48926 4.61567 4.65424 4.71332 4.74337 4.76622 4.81552 4.84661 4.90535 5.00333 5.06430 5.09863 5.13719 5.17639 5.34264 5.40794 5.60437 5.82251 5.91254 6.04680 6.16015 6.37078 6.58637 7.11977 7.18077 7.56101 8.09946 8.69106 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002892 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.535768 B = 9679.821703 C =10448.007043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.988 3.012 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.329 4.329 8 H 0.078 0.922 9 N -0.571 5.571 10 C 0.410 3.590 11 O -0.623 6.623 12 C 0.054 3.946 13 N -0.497 5.497 14 C 0.063 3.937 15 C -0.118 4.118 16 C 0.121 3.879 17 N -0.584 5.584 18 C 0.513 3.487 19 O -0.576 6.576 20 C 0.058 3.942 21 H 0.117 0.883 22 C -0.138 4.138 23 C -0.148 4.148 24 C 0.035 3.965 25 O -0.386 6.386 26 C 0.111 3.889 27 C 0.049 3.951 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 -16.537 -8.353 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.459 4.459 8 H 0.096 0.904 9 N -0.207 5.207 10 C 0.196 3.804 11 O -0.511 6.511 12 C -0.078 4.078 13 N -0.219 5.219 14 C -0.065 4.065 15 C -0.157 4.157 16 C -0.003 4.003 17 N -0.317 5.317 18 C 0.301 3.699 19 O -0.456 6.456 20 C -0.003 4.003 21 H 0.134 0.866 22 C -0.176 4.176 23 C -0.186 4.186 24 C -0.041 4.041 25 O -0.305 6.305 26 C -0.011 4.011 27 C -0.081 4.081 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.124 0.876 46 H 0.096 0.904 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.323 -17.400 -7.809 19.075 hybrid contribution 0.255 2.071 0.461 2.137 sum -0.068 -15.329 -7.347 16.999 Atomic orbital electron populations 1.69669 1.06768 1.29173 1.50346 1.25982 0.96459 1.02314 0.96415 0.84936 0.78055 0.77513 0.78246 1.19888 1.19614 1.19934 1.19650 0.92571 0.84127 1.49557 0.90423 1.42098 1.09378 1.04963 1.64305 1.22069 0.88815 0.87031 0.82442 1.90486 1.15460 1.87878 1.57253 1.22308 0.95224 0.85005 1.05271 1.61460 1.18596 1.39050 1.02744 1.20894 0.96229 0.96664 0.92676 1.21249 1.00234 0.95674 0.98564 1.21412 0.92084 1.00874 0.85897 1.47569 1.46231 1.12218 1.25642 1.20795 0.79310 0.81704 0.88044 1.90661 1.61877 1.49977 1.43074 1.23034 0.97318 0.83643 0.96281 0.86585 1.22935 0.91637 1.00069 1.02918 1.22956 0.98168 0.94869 1.02583 1.23753 0.85395 1.00247 0.94664 1.89246 1.49568 1.22120 1.69604 1.22476 1.03191 0.86616 0.88800 1.22281 0.97780 0.95712 0.92296 0.91353 0.77047 0.88091 0.86546 0.94439 0.93543 0.89439 0.92668 0.89944 0.90740 0.91851 0.86976 0.90814 0.87455 0.88139 0.89880 0.89264 0.87553 0.90382 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.96 13.05 21.66 0.28 -47.67 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 3 Si 0.99 41.63 29.55 68.60 2.03 43.66 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.33 -17.78 9.68 84.04 0.81 -16.97 16 8 H 0.08 4.51 7.16 -2.91 -0.02 4.49 16 9 N -0.57 -27.33 5.29 -306.98 -1.62 -28.95 16 10 C 0.41 17.47 7.07 87.66 0.62 18.09 16 11 O -0.62 -30.39 12.14 -3.08 -0.04 -30.42 16 12 C 0.05 1.65 5.49 85.56 0.47 2.12 16 13 N -0.50 -14.23 4.37 -916.52 -4.01 -18.24 16 14 C 0.06 1.96 4.02 84.72 0.34 2.30 16 15 C -0.12 -3.20 6.02 29.56 0.18 -3.02 16 16 C 0.12 3.08 5.40 87.39 0.47 3.55 16 17 N -0.58 -14.16 2.53 -817.15 -2.07 -16.23 16 18 C 0.51 14.22 6.84 87.66 0.60 14.82 16 19 O -0.58 -21.23 16.05 15.02 0.24 -20.99 16 20 C 0.06 1.20 2.72 30.35 0.08 1.28 16 21 H 0.12 1.72 7.53 -2.39 -0.02 1.70 16 22 C -0.14 -2.24 5.80 31.61 0.18 -2.06 16 23 C -0.15 -1.87 7.09 31.61 0.22 -1.64 16 24 C 0.04 0.52 7.63 72.48 0.55 1.07 16 25 O -0.39 -9.61 10.95 -130.92 -1.43 -11.04 16 26 C 0.11 2.16 6.05 86.48 0.52 2.68 16 27 C 0.05 1.30 4.25 87.05 0.37 1.67 16 28 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 29 H 0.40 18.16 7.90 -92.71 -0.73 17.43 16 30 H 0.10 2.93 7.90 -2.38 -0.02 2.91 16 31 H 0.12 3.00 8.09 -2.39 -0.02 2.98 16 32 H 0.04 1.36 5.85 -2.39 -0.01 1.35 16 33 H 0.05 1.52 7.53 -2.39 -0.02 1.51 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 1.96 8.10 -2.38 -0.02 1.94 16 37 H 0.07 2.00 7.32 -2.39 -0.02 1.98 16 38 H 0.06 1.35 7.87 -2.38 -0.02 1.33 16 39 H 0.11 1.28 6.70 -2.39 -0.02 1.26 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.11 1.57 4.08 -2.39 -0.01 1.56 16 46 H 0.08 2.08 7.46 -2.39 -0.02 2.06 16 47 H 0.04 1.34 6.19 -2.39 -0.01 1.32 16 Total: -1.00 -71.77 363.78 -0.46 -72.24 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.26 Total: 33.90 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 5.90 Total: 23.75 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -7.42 Total: -111.10 kcal Atomic # 8 Polarization: -61.22 SS G_CDS: -1.23 Total: -62.45 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -71.77 -0.46 -72.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194732166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.960 kcal (2) G-P(sol) polarization free energy of solvation -71.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds