Wall clock time and date at job start Fri Apr 10 2020 18:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99908 * 2 1 4 4 H 1.48501 * 109.46890 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47031 * 299.99724 * 3 2 1 6 6 H 1.48498 * 109.47078 * 59.99983 * 3 2 1 7 7 C 1.38944 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00265 * 180.02562 * 7 2 1 9 9 N 1.37103 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00441 * 180.02562 * 9 7 2 11 11 O 1.21303 * 119.99485 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00265 * 180.02562 * 10 9 7 13 13 N 1.46908 * 109.46986 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99793 * 179.97438 * 13 12 10 15 15 C 1.53040 * 109.45778 * 154.99990 * 14 13 12 16 16 C 1.53196 * 109.31148 * 181.37051 * 15 14 13 17 17 N 1.46927 * 108.77702 * 305.36807 * 16 15 14 18 18 C 1.34777 * 120.63012 * 233.58447 * 17 16 15 19 19 O 1.21277 * 119.99716 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.99935 * 179.97438 * 18 17 16 21 21 H 1.09002 * 109.87144 * 304.30074 * 20 18 17 22 22 C 1.54103 * 109.87783 * 65.30829 * 20 18 17 23 23 C 1.54808 * 104.18578 * 121.60033 * 22 20 18 24 24 C 1.54992 * 102.09663 * 20.88343 * 23 22 20 25 25 O 1.43750 * 109.87831 * 183.29217 * 20 18 17 26 26 C 1.46923 * 118.73920 * 53.85709 * 17 16 15 27 27 C 1.53042 * 109.44889 * 275.06319 * 14 13 12 28 28 H 0.97004 * 120.00237 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99902 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47202 * 60.00120 * 12 10 9 31 31 H 1.08997 * 109.47198 * 299.99667 * 12 10 9 32 32 H 1.00895 * 110.99614 * 56.04808 * 13 12 10 33 33 H 1.09006 * 109.46123 * 35.02492 * 14 13 12 34 34 H 1.09000 * 109.49435 * 61.42141 * 15 14 13 35 35 H 1.08996 * 109.49866 * 301.32355 * 15 14 13 36 36 H 1.09000 * 109.58740 * 185.57817 * 16 15 14 37 37 H 1.09000 * 109.58326 * 65.14941 * 16 15 14 38 38 H 1.08992 * 110.48760 * 240.28022 * 22 20 18 39 39 H 1.09001 * 110.48539 * 2.79324 * 22 20 18 40 40 H 1.09007 * 110.90596 * 139.08267 * 23 22 20 41 41 H 1.09000 * 110.90905 * 262.67898 * 23 22 20 42 42 H 1.08994 * 110.61694 * 81.46994 * 24 23 22 43 43 H 1.08996 * 110.62327 * 204.31608 * 24 23 22 44 44 H 1.09005 * 109.58977 * 65.92561 * 26 17 16 45 45 H 1.09004 * 109.59144 * 186.35368 * 26 17 16 46 46 H 1.09004 * 109.49444 * 298.57157 * 27 14 13 47 47 H 1.08998 * 109.49997 * 58.66836 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0026 11 8 3.2102 -3.5578 0.0031 12 6 1.2437 -4.8629 0.0032 13 7 2.1984 -5.9795 0.0037 14 6 1.4981 -7.2709 0.0049 15 6 2.4044 -8.3429 -0.6044 16 6 1.6584 -9.6806 -0.6329 17 7 1.1877 -9.9886 0.7244 18 6 1.4876 -11.1678 1.3041 19 8 2.1524 -11.9863 0.7050 20 6 0.9978 -11.4686 2.6972 21 1 1.3274 -10.6878 3.3825 22 6 -0.5407 -11.5567 2.7041 23 6 -0.8367 -12.9816 3.2319 24 6 0.4822 -13.3373 3.9641 25 8 1.5038 -12.7431 3.1286 26 6 0.3787 -8.9893 1.4353 27 6 1.1437 -7.6570 1.4428 28 1 -0.4851 0.8401 0.0004 29 1 0.3534 -2.3907 0.0024 30 1 0.6174 -4.9212 -0.8870 31 1 0.6168 -4.9201 0.8930 32 1 2.8332 -5.9120 0.7851 33 1 0.5849 -7.1893 -0.5847 34 1 3.3067 -8.4423 -0.0010 35 1 2.6754 -8.0557 -1.6204 36 1 2.3317 -10.4673 -0.9735 37 1 0.8056 -9.6091 -1.3080 38 1 -0.9627 -10.8067 3.3729 39 1 -0.9345 -11.4319 1.6954 40 1 -1.6769 -12.9724 3.9264 41 1 -1.0225 -13.6708 2.4081 42 1 0.4981 -12.8979 4.9614 43 1 0.6107 -14.4183 4.0201 44 1 -0.5764 -8.8624 0.9254 45 1 0.2073 -9.3195 2.4598 46 1 2.0579 -7.7629 2.0269 47 1 0.5173 -6.8817 1.8839 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199202472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:30 Heat of formation + Delta-G solvation = -112.649263 kcal Electronic energy + Delta-G solvation = -27726.486979 eV Core-core repulsion = 23716.063068 eV Total energy + Delta-G solvation = -4010.423911 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.97855 -39.27639 -38.36730 -37.53487 -35.19341 -33.90205 -32.80746 -31.83293 -31.29588 -30.92859 -29.74227 -26.89875 -25.01237 -24.01275 -23.60596 -22.82095 -22.07878 -20.93200 -19.70650 -19.12825 -17.94025 -17.75441 -16.88065 -16.75035 -16.04650 -15.67887 -15.34828 -15.21924 -14.84696 -14.74054 -14.58655 -14.17064 -14.05575 -13.92243 -13.89680 -13.54202 -13.44889 -12.76498 -12.66189 -12.32553 -12.19739 -12.12223 -11.91580 -11.72033 -11.60990 -11.52090 -11.44079 -11.37883 -11.10418 -10.96581 -10.66608 -10.50963 -10.36135 -10.24650 -9.71195 -9.54478 -8.96068 -8.49305 -8.07625 -7.98263 -6.44392 -3.85137 2.29733 2.49909 3.14558 3.25379 3.32756 3.48852 3.87748 3.91502 4.03015 4.10564 4.25951 4.27690 4.44827 4.45878 4.69351 4.72163 4.74227 4.83521 5.00622 5.03597 5.09034 5.09096 5.19118 5.21155 5.24336 5.26969 5.32836 5.38489 5.48717 5.51674 5.52631 5.68100 5.70833 5.81851 5.93440 5.96370 6.13784 6.22713 6.26303 6.38407 7.07113 7.19662 7.53182 7.61870 7.90379 8.04165 8.58570 9.15645 9.51643 10.03057 10.73377 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.028777 B = 0.002012 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.759560 B =13911.699651 C =14370.112743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.663 5.663 14 C 0.089 3.911 15 C -0.121 4.121 16 C 0.113 3.887 17 N -0.609 5.609 18 C 0.516 3.484 19 O -0.522 6.522 20 C 0.060 3.940 21 H 0.095 0.905 22 C -0.147 4.147 23 C -0.154 4.154 24 C 0.043 3.957 25 O -0.348 6.348 26 C 0.109 3.891 27 C -0.170 4.170 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.350 0.650 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.556 -23.282 6.893 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.294 5.294 14 C -0.022 4.022 15 C -0.160 4.160 16 C -0.009 4.009 17 N -0.345 5.345 18 C 0.302 3.698 19 O -0.397 6.397 20 C -0.001 4.001 21 H 0.112 0.888 22 C -0.185 4.185 23 C -0.192 4.192 24 C -0.034 4.034 25 O -0.266 6.266 26 C -0.015 4.015 27 C -0.209 4.209 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.170 0.830 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.185 -23.627 5.823 25.107 hybrid contribution -0.899 1.150 1.072 1.811 sum -7.084 -22.477 6.895 24.555 Atomic orbital electron populations 1.69618 1.05933 1.28060 1.50739 1.25265 0.95651 0.99748 0.97342 0.85799 0.79736 0.81105 0.77705 1.19204 1.20726 1.20777 1.19756 0.93411 0.82219 1.47414 0.87866 1.41874 1.09182 1.04630 1.64396 1.19831 0.88408 0.84745 0.84500 1.90534 1.13776 1.87066 1.55320 1.21706 0.94406 0.91002 1.01064 1.60187 1.18379 0.99501 1.51286 1.21588 0.96896 0.89736 0.93992 1.21899 0.98610 0.92526 1.02950 1.21685 0.99276 0.97931 0.82037 1.48096 1.53425 1.15909 1.17081 1.20427 0.80113 0.81509 0.87708 1.90712 1.38057 1.46446 1.64506 1.22633 0.94354 0.89146 0.94004 0.88795 1.23013 0.93426 0.98600 1.03487 1.23143 0.98680 0.96255 1.01079 1.23708 0.86166 0.99582 0.93921 1.89101 1.39458 1.30886 1.67122 1.21909 0.94059 0.88247 0.97279 1.22833 1.01512 0.96862 0.99742 0.91927 0.77490 0.89626 0.93915 0.82995 0.90282 0.91363 0.89522 0.88772 0.91256 0.89311 0.89816 0.89590 0.90152 0.91663 0.88449 0.90722 0.89850 0.90969 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.04 5.29 -10.97 -0.06 -14.10 16 10 C 0.44 10.15 7.82 -10.99 -0.09 10.07 16 11 O -0.58 -15.70 15.78 5.54 0.09 -15.61 16 12 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 13 N -0.66 -10.05 5.87 -107.94 -0.63 -10.68 16 14 C 0.09 0.97 2.43 -67.67 -0.16 0.81 16 15 C -0.12 -1.30 5.69 -26.61 -0.15 -1.45 16 16 C 0.11 1.12 6.43 -3.71 -0.02 1.09 16 17 N -0.61 -5.85 2.97 -172.50 -0.51 -6.36 16 18 C 0.52 6.08 6.89 -10.99 -0.08 6.00 16 19 O -0.52 -8.43 15.94 -14.01 -0.22 -8.65 16 20 C 0.06 0.54 2.95 -27.31 -0.08 0.46 16 21 H 0.09 0.70 7.50 -51.93 -0.39 0.31 16 22 C -0.15 -0.86 5.08 -25.20 -0.13 -0.99 16 23 C -0.15 -0.82 7.15 -24.73 -0.18 -1.00 16 24 C 0.04 0.28 7.72 38.21 0.30 0.58 16 25 O -0.35 -3.89 10.76 -54.80 -0.59 -4.48 16 26 C 0.11 0.77 5.65 -3.49 -0.02 0.75 16 27 C -0.17 -1.51 5.35 -26.38 -0.14 -1.65 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 30 H 0.09 1.32 8.06 -51.93 -0.42 0.90 16 31 H 0.04 0.62 7.41 -51.93 -0.38 0.24 16 32 H 0.35 5.62 8.18 -39.29 -0.32 5.30 16 33 H 0.08 0.82 7.80 -51.93 -0.40 0.42 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.07 7.01 -51.93 -0.36 0.70 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.32 7.72 -51.93 -0.40 -0.08 16 39 H 0.08 0.52 7.52 -51.93 -0.39 0.13 16 40 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.44 4.83 -51.93 -0.25 0.19 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.68 7.42 -51.93 -0.39 0.29 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -34.81 374.90 -8.95 -43.76 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -7.35 Total: 10.56 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -1.02 Total: 7.56 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.48 Total: -54.65 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.73 Total: -28.74 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.81 -8.95 -43.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199202472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.890 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds