Wall clock time and date at job start Fri Apr 10 2020 18:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99908 * 2 1 4 4 H 1.48501 * 109.46890 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47031 * 299.99724 * 3 2 1 6 6 H 1.48498 * 109.47078 * 59.99983 * 3 2 1 7 7 C 1.38944 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00265 * 180.02562 * 7 2 1 9 9 N 1.37103 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00441 * 180.02562 * 9 7 2 11 11 O 1.21303 * 119.99485 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00265 * 180.02562 * 10 9 7 13 13 N 1.46908 * 109.46986 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99793 * 179.97438 * 13 12 10 15 15 C 1.53040 * 109.45778 * 154.99990 * 14 13 12 16 16 C 1.53196 * 109.31148 * 181.37051 * 15 14 13 17 17 N 1.46927 * 108.77702 * 305.36807 * 16 15 14 18 18 C 1.34777 * 120.63012 * 233.58447 * 17 16 15 19 19 O 1.21277 * 119.99716 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.99935 * 179.97438 * 18 17 16 21 21 H 1.09002 * 109.87144 * 304.30074 * 20 18 17 22 22 C 1.54103 * 109.87783 * 65.30829 * 20 18 17 23 23 C 1.54808 * 104.18578 * 121.60033 * 22 20 18 24 24 C 1.54992 * 102.09663 * 20.88343 * 23 22 20 25 25 O 1.43750 * 109.87831 * 183.29217 * 20 18 17 26 26 C 1.46923 * 118.73920 * 53.85709 * 17 16 15 27 27 C 1.53042 * 109.44889 * 275.06319 * 14 13 12 28 28 H 0.97004 * 120.00237 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99902 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47202 * 60.00120 * 12 10 9 31 31 H 1.08997 * 109.47198 * 299.99667 * 12 10 9 32 32 H 1.00895 * 110.99614 * 56.04808 * 13 12 10 33 33 H 1.09006 * 109.46123 * 35.02492 * 14 13 12 34 34 H 1.09000 * 109.49435 * 61.42141 * 15 14 13 35 35 H 1.08996 * 109.49866 * 301.32355 * 15 14 13 36 36 H 1.09000 * 109.58740 * 185.57817 * 16 15 14 37 37 H 1.09000 * 109.58326 * 65.14941 * 16 15 14 38 38 H 1.08992 * 110.48760 * 240.28022 * 22 20 18 39 39 H 1.09001 * 110.48539 * 2.79324 * 22 20 18 40 40 H 1.09007 * 110.90596 * 139.08267 * 23 22 20 41 41 H 1.09000 * 110.90905 * 262.67898 * 23 22 20 42 42 H 1.08994 * 110.61694 * 81.46994 * 24 23 22 43 43 H 1.08996 * 110.62327 * 204.31608 * 24 23 22 44 44 H 1.09005 * 109.58977 * 65.92561 * 26 17 16 45 45 H 1.09004 * 109.59144 * 186.35368 * 26 17 16 46 46 H 1.09004 * 109.49444 * 298.57157 * 27 14 13 47 47 H 1.08998 * 109.49997 * 58.66836 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0026 11 8 3.2102 -3.5578 0.0031 12 6 1.2437 -4.8629 0.0032 13 7 2.1984 -5.9795 0.0037 14 6 1.4981 -7.2709 0.0049 15 6 2.4044 -8.3429 -0.6044 16 6 1.6584 -9.6806 -0.6329 17 7 1.1877 -9.9886 0.7244 18 6 1.4876 -11.1678 1.3041 19 8 2.1524 -11.9863 0.7050 20 6 0.9978 -11.4686 2.6972 21 1 1.3274 -10.6878 3.3825 22 6 -0.5407 -11.5567 2.7041 23 6 -0.8367 -12.9816 3.2319 24 6 0.4822 -13.3373 3.9641 25 8 1.5038 -12.7431 3.1286 26 6 0.3787 -8.9893 1.4353 27 6 1.1437 -7.6570 1.4428 28 1 -0.4851 0.8401 0.0004 29 1 0.3534 -2.3907 0.0024 30 1 0.6174 -4.9212 -0.8870 31 1 0.6168 -4.9201 0.8930 32 1 2.8332 -5.9120 0.7851 33 1 0.5849 -7.1893 -0.5847 34 1 3.3067 -8.4423 -0.0010 35 1 2.6754 -8.0557 -1.6204 36 1 2.3317 -10.4673 -0.9735 37 1 0.8056 -9.6091 -1.3080 38 1 -0.9627 -10.8067 3.3729 39 1 -0.9345 -11.4319 1.6954 40 1 -1.6769 -12.9724 3.9264 41 1 -1.0225 -13.6708 2.4081 42 1 0.4981 -12.8979 4.9614 43 1 0.6107 -14.4183 4.0201 44 1 -0.5764 -8.8624 0.9254 45 1 0.2073 -9.3195 2.4598 46 1 2.0579 -7.7629 2.0269 47 1 0.5173 -6.8817 1.8839 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199202472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:30 Heat of formation + Delta-G solvation = -138.991712 kcal Electronic energy + Delta-G solvation = -27727.629273 eV Core-core repulsion = 23716.063068 eV Total energy + Delta-G solvation = -4011.566205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.73531 -40.29501 -39.74689 -38.61112 -36.37147 -35.77662 -33.53211 -33.24197 -32.53572 -31.88476 -30.39905 -28.30913 -26.38956 -25.09474 -24.37834 -23.66570 -22.57824 -21.77802 -21.12134 -20.30063 -19.85655 -18.55947 -17.73791 -17.51763 -17.39579 -16.77929 -16.43406 -16.26065 -16.12255 -15.85102 -15.56720 -15.43177 -15.24100 -14.98258 -14.63609 -14.59570 -14.37951 -13.95155 -13.69117 -13.51999 -13.43846 -13.11936 -12.86463 -12.81475 -12.66402 -12.54653 -12.39876 -12.24648 -12.15742 -12.11704 -11.91464 -11.80108 -11.53962 -11.49985 -11.16465 -10.50487 -10.33453 -10.00432 -9.77637 -9.24213 -8.46487 -5.94735 1.36725 1.42397 1.45948 1.56133 1.76836 2.06757 2.29553 2.91062 2.93592 3.21131 3.31878 3.50731 3.57014 3.72659 3.83351 3.93839 4.01755 4.02660 4.17107 4.24188 4.32393 4.34501 4.37638 4.47826 4.48267 4.60606 4.65914 4.68642 4.72907 4.76700 4.78373 4.88965 4.90792 4.98781 5.00720 5.13071 5.16789 5.25951 5.42031 5.48672 5.78044 5.93048 6.15823 6.30255 6.41505 6.61443 7.06874 7.13933 7.57850 8.13727 8.70949 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.028777 B = 0.002012 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.759560 B =13911.699651 C =14370.112743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.333 4.333 8 H 0.076 0.924 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.627 6.627 12 C 0.068 3.932 13 N -0.681 5.681 14 C 0.091 3.909 15 C -0.114 4.114 16 C 0.116 3.884 17 N -0.604 5.604 18 C 0.507 3.493 19 O -0.580 6.580 20 C 0.058 3.942 21 H 0.112 0.888 22 C -0.142 4.142 23 C -0.150 4.150 24 C 0.034 3.966 25 O -0.390 6.390 26 C 0.109 3.891 27 C -0.164 4.164 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.342 0.658 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.060 0.940 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 -23.047 8.051 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.094 0.906 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.514 6.514 12 C -0.064 4.064 13 N -0.312 5.312 14 C -0.019 4.019 15 C -0.153 4.153 16 C -0.006 4.006 17 N -0.338 5.338 18 C 0.296 3.704 19 O -0.459 6.459 20 C -0.003 4.003 21 H 0.129 0.871 22 C -0.179 4.179 23 C -0.188 4.188 24 C -0.041 4.041 25 O -0.309 6.309 26 C -0.014 4.014 27 C -0.203 4.203 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.161 0.839 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.126 0.874 46 H 0.079 0.921 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.920 -23.382 6.991 25.984 hybrid contribution -0.028 1.029 0.698 1.244 sum -8.949 -22.353 7.689 25.276 Atomic orbital electron populations 1.69665 1.06689 1.29205 1.50403 1.26001 0.96566 1.02297 0.96369 0.84900 0.77986 0.77282 0.78346 1.20013 1.19659 1.19509 1.19671 0.92627 0.84137 1.49805 0.90565 1.41932 1.09359 1.04667 1.65076 1.21015 0.88266 0.86353 0.82048 1.90505 1.16132 1.88037 1.56694 1.21560 0.93936 0.87619 1.03320 1.60153 1.18873 1.00786 1.51384 1.21653 0.96876 0.87488 0.95857 1.21799 0.98119 0.93160 1.02191 1.21606 0.99621 0.96460 0.82937 1.48186 1.52895 1.15846 1.16861 1.21120 0.79238 0.81347 0.88714 1.90678 1.40747 1.48391 1.66086 1.22816 0.96487 0.88947 0.92089 0.87097 1.23081 0.90795 0.99793 1.04280 1.23152 0.98791 0.95698 1.01113 1.23962 0.85956 0.99842 0.94386 1.89062 1.41712 1.32081 1.68093 1.22153 0.94050 0.86321 0.98829 1.22750 1.01561 0.98244 0.97794 0.91294 0.76849 0.87681 0.90879 0.83903 0.88655 0.93280 0.90223 0.90864 0.89100 0.86024 0.90037 0.86823 0.91354 0.89765 0.88229 0.88197 0.87412 0.92113 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 2 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 3 Si 0.99 42.51 29.55 68.60 2.03 44.53 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 7 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.57 -28.62 5.29 -306.99 -1.62 -30.25 16 10 C 0.44 20.10 7.82 87.65 0.69 20.78 16 11 O -0.63 -34.54 15.78 -3.10 -0.05 -34.59 16 12 C 0.07 2.11 5.96 85.55 0.51 2.62 16 13 N -0.68 -19.86 5.87 -495.41 -2.91 -22.77 16 14 C 0.09 1.80 2.43 44.94 0.11 1.91 16 15 C -0.11 -2.40 5.69 30.67 0.17 -2.23 16 16 C 0.12 2.23 6.43 86.36 0.56 2.78 16 17 N -0.60 -10.67 2.97 -818.06 -2.43 -13.10 16 18 C 0.51 11.77 6.89 87.66 0.60 12.37 16 19 O -0.58 -19.56 15.94 15.69 0.25 -19.31 16 20 C 0.06 0.94 2.95 30.22 0.09 1.03 16 21 H 0.11 1.38 7.50 -2.39 -0.02 1.36 16 22 C -0.14 -1.19 5.08 31.58 0.16 -1.03 16 23 C -0.15 -1.22 7.15 31.89 0.23 -0.99 16 24 C 0.03 0.40 7.72 72.66 0.56 0.96 16 25 O -0.39 -8.63 10.76 -130.27 -1.40 -10.04 16 26 C 0.11 1.15 5.65 86.51 0.49 1.64 16 27 C -0.16 -2.44 5.35 30.82 0.16 -2.28 16 28 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 29 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 30 H 0.11 2.92 8.06 -2.38 -0.02 2.90 16 31 H 0.07 1.87 7.41 -2.39 -0.02 1.85 16 32 H 0.34 10.89 8.18 -89.70 -0.73 10.15 16 33 H 0.10 1.63 7.80 -2.38 -0.02 1.61 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 1.74 7.01 -2.39 -0.02 1.72 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.12 0.24 7.72 -2.39 -0.02 0.22 16 39 H 0.08 0.75 7.52 -2.39 -0.02 0.73 16 40 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.11 0.67 4.83 -2.39 -0.01 0.65 16 46 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.09 1.19 7.42 -2.39 -0.02 1.18 16 Total: -1.00 -79.26 374.90 -0.71 -79.96 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.47 Total: 34.28 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 5.61 Total: 19.51 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -6.68 Total: -114.35 kcal Atomic # 8 Polarization: -62.73 SS G_CDS: -1.20 Total: -63.94 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -79.26 -0.71 -79.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199202472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.027 kcal (2) G-P(sol) polarization free energy of solvation -79.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds