Wall clock time and date at job start Fri Apr 10 2020 18:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 120.00250 * 2 1 4 4 H 1.48497 * 109.47024 * 269.99848 * 3 2 1 5 5 H 1.48502 * 109.47047 * 29.99638 * 3 2 1 6 6 H 1.48504 * 109.46886 * 149.99737 * 3 2 1 7 7 C 1.38956 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99700 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99574 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00554 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99538 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47063 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99933 * 180.02562 * 13 12 10 15 15 C 1.53039 * 109.45787 * 204.99936 * 14 13 12 16 16 C 1.53196 * 109.33748 * 178.59754 * 15 14 13 17 17 N 1.46992 * 108.73878 * 54.61838 * 16 15 14 18 18 C 1.34784 * 120.60795 * 126.38575 * 17 16 15 19 19 O 1.21283 * 119.99359 * 180.02562 * 18 17 16 20 20 C 1.50691 * 120.00259 * 0.02599 * 18 17 16 21 21 H 1.08993 * 110.33399 * 57.25092 * 20 18 17 22 22 C 1.54476 * 110.37383 * 294.99512 * 20 18 17 23 23 C 1.54505 * 104.06418 * 217.19246 * 22 20 18 24 24 C 1.54480 * 104.06550 * 359.97438 * 23 22 20 25 25 O 1.44420 * 104.79796 * 23.98058 * 24 23 22 26 26 C 1.46922 * 118.75940 * 306.41163 * 17 16 15 27 27 C 1.53042 * 109.46126 * 84.92697 * 14 13 12 28 28 H 0.96998 * 119.99845 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99535 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47034 * 60.00518 * 12 10 9 31 31 H 1.09006 * 109.47179 * 300.00381 * 12 10 9 32 32 H 1.00896 * 110.99535 * 303.95001 * 13 12 10 33 33 H 1.09006 * 109.44719 * 324.96588 * 14 13 12 34 34 H 1.09002 * 109.49756 * 298.56477 * 15 14 13 35 35 H 1.09000 * 109.49883 * 58.63220 * 15 14 13 36 36 H 1.09001 * 109.58261 * 174.43824 * 16 15 14 37 37 H 1.08996 * 109.58319 * 294.86146 * 16 15 14 38 38 H 1.09003 * 110.51311 * 335.83801 * 22 20 18 39 39 H 1.09004 * 110.50990 * 98.54412 * 22 20 18 40 40 H 1.09005 * 110.51508 * 118.64974 * 23 22 20 41 41 H 1.09005 * 110.51110 * 241.21476 * 23 22 20 42 42 H 1.09006 * 110.37020 * 142.80925 * 24 23 22 43 43 H 1.09000 * 110.37322 * 265.03883 * 24 23 22 44 44 H 1.09004 * 109.58306 * 293.82373 * 26 17 16 45 45 H 1.08994 * 109.70589 * 173.46329 * 26 17 16 46 46 H 1.08992 * 109.50305 * 301.33901 * 27 14 13 47 47 H 1.08998 * 109.49487 * 61.40512 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3799 -1.2035 0.0011 10 6 4.0536 -2.3707 0.0021 11 8 3.4471 -3.4211 0.0021 12 6 5.5606 -2.3708 0.0021 13 7 6.0502 -3.7558 0.0027 14 6 7.5187 -3.7950 0.0034 15 6 7.9937 -5.1162 -0.6059 16 6 9.5252 -5.1394 -0.6360 17 7 10.0281 -4.8847 0.7216 18 6 10.8990 -5.7344 1.3014 19 8 11.3065 -5.5137 2.4222 20 6 11.3665 -6.9584 0.5571 21 1 11.8264 -6.6737 -0.3892 22 6 10.1849 -7.9228 0.3121 23 6 10.8055 -9.3276 0.4814 24 6 12.2888 -9.0458 0.8081 25 8 12.2975 -7.7126 1.3631 26 6 9.5632 -3.6872 1.4346 27 6 8.0312 -3.6807 1.4409 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3634 0.0007 30 1 5.9239 -1.8562 0.8917 31 1 5.9240 -1.8577 -0.8883 32 1 5.6747 -4.2716 0.7844 33 1 7.9043 -2.9636 -0.5868 34 1 7.6290 -5.9472 -0.0020 35 1 7.6084 -5.2078 -1.6214 36 1 9.8691 -6.1159 -0.9768 37 1 9.8890 -4.3652 -1.3115 38 1 9.3999 -7.7605 1.0507 39 1 9.7927 -7.7976 -0.6972 40 1 10.3273 -9.8598 1.3038 41 1 10.7179 -9.8979 -0.4434 42 1 12.6592 -9.7639 1.5398 43 1 12.8912 -9.0848 -0.0995 44 1 9.9302 -2.7947 0.9278 45 1 9.9327 -3.7033 2.4598 46 1 7.6732 -2.7505 1.8819 47 1 7.6658 -4.5249 2.0256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199202474.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:34 Heat of formation + Delta-G solvation = -103.344301 kcal Electronic energy + Delta-G solvation = -27869.689175 eV Core-core repulsion = 23859.668758 eV Total energy + Delta-G solvation = -4010.020417 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01122 -39.33596 -38.52929 -37.66132 -35.30621 -33.95620 -32.76970 -31.76759 -31.65944 -31.33718 -29.67860 -27.09820 -25.03610 -24.20159 -23.35797 -22.90088 -21.93826 -21.13314 -19.67387 -19.26932 -18.33699 -17.93613 -16.87270 -16.63549 -16.12068 -15.68765 -15.35459 -15.23870 -15.16111 -14.92014 -14.74921 -14.32931 -14.24044 -14.02760 -13.63621 -13.48885 -13.22918 -12.86896 -12.73836 -12.44359 -12.32464 -12.23444 -12.06759 -11.97557 -11.79344 -11.63410 -11.53544 -11.24172 -11.20089 -10.99854 -10.75613 -10.61657 -10.43981 -9.99867 -9.88169 -9.59787 -9.01915 -8.62975 -8.22034 -8.16385 -6.33299 -3.84855 2.25954 2.40672 3.00289 3.04821 3.13270 3.51258 3.70890 3.89514 3.99540 4.08273 4.11346 4.29526 4.43656 4.49570 4.61236 4.63879 4.73742 4.75259 4.81320 4.95661 4.98289 5.04385 5.16084 5.19144 5.20273 5.22248 5.34376 5.39218 5.45076 5.52192 5.53030 5.54937 5.62799 5.71550 5.79548 5.87975 5.90864 6.03203 6.15252 6.31066 7.01417 7.05394 7.50985 7.55934 7.84660 8.12075 8.57245 8.92627 9.39990 9.79959 10.79777 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.002130 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.334088 B =13140.692651 C =13660.154829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.565 6.565 12 C 0.048 3.952 13 N -0.662 5.662 14 C 0.088 3.912 15 C -0.122 4.122 16 C 0.098 3.902 17 N -0.608 5.608 18 C 0.521 3.479 19 O -0.522 6.522 20 C 0.058 3.942 21 H 0.095 0.905 22 C -0.147 4.147 23 C -0.154 4.154 24 C 0.041 3.959 25 O -0.346 6.346 26 C 0.118 3.882 27 C -0.167 4.167 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.352 0.648 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.651 -12.115 -2.661 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.447 6.447 12 C -0.085 4.085 13 N -0.293 5.293 14 C -0.023 4.023 15 C -0.161 4.161 16 C -0.025 4.025 17 N -0.344 5.344 18 C 0.308 3.692 19 O -0.397 6.397 20 C -0.003 4.003 21 H 0.112 0.888 22 C -0.185 4.185 23 C -0.192 4.192 24 C -0.036 4.036 25 O -0.263 6.263 26 C -0.005 4.005 27 C -0.207 4.207 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.172 0.828 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.095 0.905 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 25.300 -12.582 -2.543 28.370 hybrid contribution 0.521 1.687 0.666 1.887 sum 25.821 -10.895 -1.877 28.088 Atomic orbital electron populations 1.69623 1.05642 1.27516 1.49282 1.25053 0.95512 0.98008 0.97649 0.86662 0.79736 0.84018 0.78897 1.19586 1.20178 1.19546 1.19430 0.79241 0.96625 1.48113 0.86289 1.42210 1.07551 1.06167 1.67047 1.19713 0.88210 0.84559 0.84048 1.90567 1.69449 1.30943 1.53741 1.21745 0.95021 0.90543 1.01215 1.60196 1.05192 1.12601 1.51343 1.21584 0.88330 0.98071 0.94300 1.21896 0.93104 0.98068 1.03025 1.22053 0.95106 1.02540 0.82770 1.48063 1.44736 1.24699 1.16896 1.20207 0.78907 0.83588 0.86536 1.90725 1.55888 1.74249 1.18851 1.22844 0.91188 0.91876 0.94378 0.88792 1.23058 0.97810 0.93934 1.03682 1.22961 0.95987 0.97077 1.03199 1.23509 0.96120 0.84708 0.99241 1.89278 1.61790 1.21286 1.53992 1.21541 0.93915 0.86290 0.98736 1.22732 0.95536 1.03260 0.99195 0.91596 0.79697 0.93736 0.89479 0.82832 0.90256 0.91194 0.89376 0.89241 0.90807 0.89855 0.89016 0.90192 0.89900 0.88541 0.91855 0.91202 0.88938 0.90461 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.96 55.50 0.77 -24.81 16 2 C 0.04 1.11 5.50 -17.46 -0.10 1.01 16 3 Si 0.88 19.16 27.74 -169.99 -4.71 14.44 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 7 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.82 5.09 -10.96 -0.06 -13.88 16 10 C 0.45 9.93 7.82 -10.99 -0.09 9.84 16 11 O -0.57 -14.91 15.78 5.55 0.09 -14.83 16 12 C 0.05 0.74 5.96 -4.97 -0.03 0.71 16 13 N -0.66 -9.34 5.87 -107.94 -0.63 -9.98 16 14 C 0.09 0.88 2.43 -67.67 -0.16 0.72 16 15 C -0.12 -1.00 5.68 -26.61 -0.15 -1.15 16 16 C 0.10 0.63 5.99 -3.67 -0.02 0.61 16 17 N -0.61 -5.53 2.97 -172.72 -0.51 -6.04 16 18 C 0.52 5.93 7.02 -10.99 -0.08 5.86 16 19 O -0.52 -8.30 15.97 -13.65 -0.22 -8.51 16 20 C 0.06 0.50 2.77 -27.11 -0.08 0.42 16 21 H 0.09 0.58 7.83 -51.93 -0.41 0.18 16 22 C -0.15 -0.92 5.53 -25.17 -0.14 -1.06 16 23 C -0.15 -0.82 7.09 -25.16 -0.18 -1.00 16 24 C 0.04 0.26 7.63 37.93 0.29 0.55 16 25 O -0.35 -3.76 10.91 -54.44 -0.59 -4.35 16 26 C 0.12 1.10 6.43 -3.71 -0.02 1.08 16 27 C -0.17 -1.61 5.33 -26.61 -0.14 -1.75 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 30 H 0.04 0.61 7.41 -51.93 -0.38 0.22 16 31 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 32 H 0.35 5.34 8.18 -39.29 -0.32 5.02 16 33 H 0.08 0.75 7.80 -51.93 -0.40 0.34 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.41 3.98 -51.93 -0.21 0.20 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.64 7.87 -51.93 -0.41 0.24 16 39 H 0.09 0.37 6.55 -51.93 -0.34 0.03 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 1.02 7.01 -51.93 -0.36 0.65 16 46 H 0.08 0.74 7.42 -51.93 -0.39 0.36 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -36.04 371.21 -8.56 -44.59 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -7.24 Total: 10.65 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.05 Total: 7.12 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.43 Total: -54.70 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.72 Total: -27.69 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.04 -8.56 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199202474.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.750 kcal (2) G-P(sol) polarization free energy of solvation -36.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds