Wall clock time and date at job start Fri Apr 10 2020 18:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 120.00250 * 2 1 4 4 H 1.48497 * 109.47024 * 269.99848 * 3 2 1 5 5 H 1.48502 * 109.47047 * 29.99638 * 3 2 1 6 6 H 1.48504 * 109.46886 * 149.99737 * 3 2 1 7 7 C 1.38956 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99700 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99574 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00554 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99538 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47063 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99933 * 180.02562 * 13 12 10 15 15 C 1.53039 * 109.45787 * 204.99936 * 14 13 12 16 16 C 1.53196 * 109.33748 * 178.59754 * 15 14 13 17 17 N 1.46992 * 108.73878 * 54.61838 * 16 15 14 18 18 C 1.34784 * 120.60795 * 126.38575 * 17 16 15 19 19 O 1.21283 * 119.99359 * 180.02562 * 18 17 16 20 20 C 1.50691 * 120.00259 * 0.02599 * 18 17 16 21 21 H 1.08993 * 110.33399 * 57.25092 * 20 18 17 22 22 C 1.54476 * 110.37383 * 294.99512 * 20 18 17 23 23 C 1.54505 * 104.06418 * 217.19246 * 22 20 18 24 24 C 1.54480 * 104.06550 * 359.97438 * 23 22 20 25 25 O 1.44420 * 104.79796 * 23.98058 * 24 23 22 26 26 C 1.46922 * 118.75940 * 306.41163 * 17 16 15 27 27 C 1.53042 * 109.46126 * 84.92697 * 14 13 12 28 28 H 0.96998 * 119.99845 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99535 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47034 * 60.00518 * 12 10 9 31 31 H 1.09006 * 109.47179 * 300.00381 * 12 10 9 32 32 H 1.00896 * 110.99535 * 303.95001 * 13 12 10 33 33 H 1.09006 * 109.44719 * 324.96588 * 14 13 12 34 34 H 1.09002 * 109.49756 * 298.56477 * 15 14 13 35 35 H 1.09000 * 109.49883 * 58.63220 * 15 14 13 36 36 H 1.09001 * 109.58261 * 174.43824 * 16 15 14 37 37 H 1.08996 * 109.58319 * 294.86146 * 16 15 14 38 38 H 1.09003 * 110.51311 * 335.83801 * 22 20 18 39 39 H 1.09004 * 110.50990 * 98.54412 * 22 20 18 40 40 H 1.09005 * 110.51508 * 118.64974 * 23 22 20 41 41 H 1.09005 * 110.51110 * 241.21476 * 23 22 20 42 42 H 1.09006 * 110.37020 * 142.80925 * 24 23 22 43 43 H 1.09000 * 110.37322 * 265.03883 * 24 23 22 44 44 H 1.09004 * 109.58306 * 293.82373 * 26 17 16 45 45 H 1.08994 * 109.70589 * 173.46329 * 26 17 16 46 46 H 1.08992 * 109.50305 * 301.33901 * 27 14 13 47 47 H 1.08998 * 109.49487 * 61.40512 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3799 -1.2035 0.0011 10 6 4.0536 -2.3707 0.0021 11 8 3.4471 -3.4211 0.0021 12 6 5.5606 -2.3708 0.0021 13 7 6.0502 -3.7558 0.0027 14 6 7.5187 -3.7950 0.0034 15 6 7.9937 -5.1162 -0.6059 16 6 9.5252 -5.1394 -0.6360 17 7 10.0281 -4.8847 0.7216 18 6 10.8990 -5.7344 1.3014 19 8 11.3065 -5.5137 2.4222 20 6 11.3665 -6.9584 0.5571 21 1 11.8264 -6.6737 -0.3892 22 6 10.1849 -7.9228 0.3121 23 6 10.8055 -9.3276 0.4814 24 6 12.2888 -9.0458 0.8081 25 8 12.2975 -7.7126 1.3631 26 6 9.5632 -3.6872 1.4346 27 6 8.0312 -3.6807 1.4409 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3634 0.0007 30 1 5.9239 -1.8562 0.8917 31 1 5.9240 -1.8577 -0.8883 32 1 5.6747 -4.2716 0.7844 33 1 7.9043 -2.9636 -0.5868 34 1 7.6290 -5.9472 -0.0020 35 1 7.6084 -5.2078 -1.6214 36 1 9.8691 -6.1159 -0.9768 37 1 9.8890 -4.3652 -1.3115 38 1 9.3999 -7.7605 1.0507 39 1 9.7927 -7.7976 -0.6972 40 1 10.3273 -9.8598 1.3038 41 1 10.7179 -9.8979 -0.4434 42 1 12.6592 -9.7639 1.5398 43 1 12.8912 -9.0848 -0.0995 44 1 9.9302 -2.7947 0.9278 45 1 9.9327 -3.7033 2.4598 46 1 7.6732 -2.7505 1.8819 47 1 7.6658 -4.5249 2.0256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199202474.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:33 Heat of formation + Delta-G solvation = -132.127393 kcal Electronic energy + Delta-G solvation = -27870.937304 eV Core-core repulsion = 23859.668758 eV Total energy + Delta-G solvation = -4011.268546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.73434 -40.40401 -39.80159 -38.66692 -36.41451 -35.82825 -33.75910 -33.40882 -32.42757 -32.18733 -30.31432 -28.46672 -26.29973 -25.15608 -24.28806 -23.67752 -22.42162 -21.91798 -21.30264 -20.47797 -19.96922 -18.64525 -17.74752 -17.53621 -17.27481 -16.92346 -16.51876 -16.18937 -15.99638 -15.94092 -15.74646 -15.46107 -15.11647 -14.93865 -14.77469 -14.57988 -14.42370 -14.13928 -13.95380 -13.69178 -13.47790 -13.15826 -12.92213 -12.79375 -12.77853 -12.47943 -12.41048 -12.27585 -12.20213 -11.98316 -11.85372 -11.67167 -11.50771 -11.45194 -11.06842 -10.65268 -10.42631 -10.24531 -9.78099 -9.27555 -8.41090 -6.02037 1.30491 1.36224 1.44807 1.45117 1.72890 1.96590 2.23388 2.72284 2.96708 3.15259 3.29952 3.41160 3.58689 3.74661 3.82849 3.92190 3.99883 4.07259 4.15588 4.18153 4.19726 4.30714 4.33107 4.43006 4.50105 4.54736 4.59542 4.67486 4.74541 4.78966 4.79938 4.88649 4.94315 4.99331 5.02919 5.11591 5.17372 5.31597 5.48901 5.53573 5.75374 5.92274 6.09605 6.28544 6.37255 6.60093 6.88605 7.05292 7.40404 7.97259 8.76546 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.002130 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.334088 B =13140.692651 C =13660.154829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.966 3.034 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.231 1.231 7 C -0.328 4.328 8 H 0.054 0.946 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.616 6.616 12 C 0.062 3.938 13 N -0.677 5.677 14 C 0.090 3.910 15 C -0.118 4.118 16 C 0.100 3.900 17 N -0.603 5.603 18 C 0.512 3.488 19 O -0.581 6.581 20 C 0.058 3.942 21 H 0.125 0.875 22 C -0.144 4.144 23 C -0.151 4.151 24 C 0.034 3.966 25 O -0.388 6.388 26 C 0.118 3.882 27 C -0.158 4.158 28 H 0.279 0.721 29 H 0.390 0.610 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.341 0.659 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.122 0.878 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.768 -10.756 -4.702 31.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.216 4.216 3 Si 0.786 3.214 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.154 1.154 7 C -0.458 4.458 8 H 0.072 0.928 9 N -0.233 5.233 10 C 0.235 3.765 11 O -0.500 6.500 12 C -0.071 4.071 13 N -0.308 5.308 14 C -0.019 4.019 15 C -0.157 4.157 16 C -0.021 4.021 17 N -0.336 5.336 18 C 0.300 3.700 19 O -0.460 6.460 20 C -0.003 4.003 21 H 0.142 0.858 22 C -0.181 4.181 23 C -0.188 4.188 24 C -0.042 4.042 25 O -0.307 6.307 26 C -0.005 4.005 27 C -0.198 4.198 28 H 0.088 0.912 29 H 0.226 0.774 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.160 0.840 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.140 0.860 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.116 0.884 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 28.437 -11.235 -4.625 30.923 hybrid contribution -0.513 1.111 1.303 1.788 sum 27.923 -10.124 -3.322 29.887 Atomic orbital electron populations 1.69810 1.08172 1.29236 1.50332 1.26151 0.96502 1.02815 0.96116 0.85349 0.79452 0.76609 0.79997 1.17998 1.20216 1.15389 1.19000 0.81596 0.94861 1.50316 0.92759 1.42042 1.05772 1.07686 1.67817 1.21068 0.91172 0.83226 0.81000 1.90546 1.71491 1.32845 1.55136 1.21686 0.89226 0.92154 1.03988 1.60246 1.07710 1.11676 1.51137 1.21711 0.85696 0.99868 0.94673 1.21863 0.94333 0.96620 1.02883 1.22264 0.93599 1.04825 0.81451 1.48170 1.43752 1.23981 1.17734 1.20881 0.78630 0.84398 0.86044 1.90690 1.58222 1.75701 1.21417 1.23038 0.91910 0.90841 0.94504 0.85771 1.23085 0.96469 0.93912 1.04665 1.22977 0.94967 0.96679 1.04220 1.23743 0.97265 0.83032 1.00118 1.89241 1.62549 1.23331 1.55569 1.21522 0.93523 0.87339 0.98093 1.22624 0.95615 1.02667 0.98906 0.91176 0.77445 0.90799 0.86357 0.84030 0.88278 0.92394 0.88742 0.86954 0.88404 0.91952 0.86032 0.91017 0.87237 0.88372 0.89666 0.88995 0.91233 0.90148 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.96 21.67 0.30 -55.88 16 2 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 3 Si 0.97 38.20 27.74 68.60 1.90 40.11 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 7 C -0.33 -19.09 10.16 84.04 0.85 -18.24 16 8 H 0.05 3.78 7.39 -2.91 -0.02 3.75 16 9 N -0.59 -27.28 5.09 -306.98 -1.56 -28.84 16 10 C 0.45 19.56 7.82 87.66 0.69 20.24 16 11 O -0.62 -33.55 15.78 -3.06 -0.05 -33.60 16 12 C 0.06 1.72 5.96 85.56 0.51 2.23 16 13 N -0.68 -17.73 5.87 -495.40 -2.91 -20.64 16 14 C 0.09 1.53 2.43 44.94 0.11 1.64 16 15 C -0.12 -1.59 5.68 30.67 0.17 -1.42 16 16 C 0.10 0.92 5.99 86.35 0.52 1.43 16 17 N -0.60 -9.80 2.97 -818.74 -2.43 -12.24 16 18 C 0.51 11.37 7.02 87.65 0.62 11.98 16 19 O -0.58 -19.15 15.97 15.33 0.24 -18.91 16 20 C 0.06 0.89 2.77 30.35 0.08 0.97 16 21 H 0.12 1.10 7.83 -2.39 -0.02 1.09 16 22 C -0.14 -1.50 5.53 31.61 0.17 -1.32 16 23 C -0.15 -1.29 7.09 31.61 0.22 -1.06 16 24 C 0.03 0.39 7.63 72.49 0.55 0.94 16 25 O -0.39 -8.24 10.91 -130.62 -1.43 -9.67 16 26 C 0.12 2.02 6.43 86.36 0.56 2.58 16 27 C -0.16 -2.77 5.33 30.67 0.16 -2.60 16 28 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.39 14.73 5.76 -92.71 -0.53 14.19 16 30 H 0.07 1.69 7.41 -2.39 -0.02 1.68 16 31 H 0.12 2.66 8.06 -2.38 -0.02 2.64 16 32 H 0.34 10.20 8.18 -89.70 -0.73 9.46 16 33 H 0.10 1.36 7.80 -2.38 -0.02 1.34 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.11 0.53 3.98 -2.39 -0.01 0.52 16 37 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.06 0.92 7.87 -2.39 -0.02 0.90 16 39 H 0.12 0.50 6.55 -2.38 -0.02 0.48 16 40 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 42 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 1.55 7.01 -2.39 -0.02 1.53 16 46 H 0.08 1.36 7.42 -2.39 -0.02 1.34 16 47 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -87.27 371.21 -0.57 -87.84 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -0.32 Total: 34.95 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 5.69 Total: 16.88 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -6.60 Total: -117.60 kcal Atomic # 8 Polarization: -60.95 SS G_CDS: -1.23 Total: -62.18 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.90 Total: 40.11 kcal Total: -87.27 -0.57 -87.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199202474.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.290 kcal (2) G-P(sol) polarization free energy of solvation -87.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds