Wall clock time and date at job start Fri Apr 10 2020 18:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00115 * 2 1 4 4 H 1.48499 * 109.46634 * 269.99695 * 3 2 1 5 5 H 1.48496 * 109.46890 * 29.99563 * 3 2 1 6 6 H 1.48501 * 109.47111 * 149.99989 * 3 2 1 7 7 C 1.38818 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00032 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99680 * 180.02562 * 7 2 1 10 10 C 1.46495 * 119.99528 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46962 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.46915 * 60.00699 * 11 10 9 13 13 C 1.54809 * 109.46973 * 179.97438 * 11 10 9 14 14 N 1.45116 * 109.53051 * 187.89809 * 13 11 10 15 15 C 1.34777 * 118.76121 * 90.70355 * 14 13 11 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00161 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.46912 * 180.02562 * 17 15 14 19 19 H 1.09005 * 110.43300 * 303.91028 * 18 17 15 20 20 C 1.54635 * 110.48418 * 181.22849 * 18 17 15 21 21 C 1.54469 * 101.76423 * 266.11797 * 20 18 17 22 22 N 1.46760 * 105.47612 * 334.58519 * 21 20 18 23 23 C 1.34419 * 111.29971 * 17.01268 * 22 21 20 24 24 O 1.21287 * 124.93890 * 179.55292 * 23 22 21 25 25 C 1.47511 * 122.48691 * 270.98237 * 14 13 11 26 26 C 1.53212 * 111.23535 * 41.23262 * 25 14 13 27 27 C 1.51538 * 109.42802 * 40.26521 * 26 25 14 28 28 O 1.38014 * 109.47021 * 300.01164 * 11 10 9 29 29 H 0.97003 * 120.00173 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00097 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47698 * 59.99686 * 10 9 7 32 32 H 1.09003 * 109.47038 * 299.99778 * 10 9 7 33 33 H 1.08996 * 109.46208 * 67.87783 * 13 11 10 34 34 H 1.08998 * 109.44998 * 307.90525 * 13 11 10 35 35 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 36 36 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 37 37 H 1.09001 * 110.96741 * 24.24049 * 20 18 17 38 38 H 1.09000 * 110.96512 * 147.99547 * 20 18 17 39 39 H 1.08998 * 110.24882 * 215.58548 * 21 20 18 40 40 H 1.08999 * 110.31917 * 93.62294 * 21 20 18 41 41 H 0.96998 * 124.35386 * 196.99765 * 22 21 20 42 42 H 1.08994 * 109.17126 * 161.74846 * 25 14 13 43 43 H 1.08996 * 109.17094 * 280.95756 * 25 14 13 44 44 H 1.09002 * 109.60723 * 280.23463 * 26 25 14 45 45 H 1.08989 * 109.42800 * 160.19115 * 26 25 14 46 46 H 1.09002 * 109.58437 * 148.72408 * 27 26 25 47 47 H 1.08995 * 109.58668 * 28.29004 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0011 12 1 5.8796 -1.6198 0.8912 13 6 6.3903 -3.5321 0.0017 14 7 7.8060 -3.2748 0.1897 15 6 8.3007 -3.2548 1.4432 16 8 7.5660 -3.4500 2.3882 17 6 9.7669 -2.9909 1.6706 18 6 10.0642 -3.0233 3.1711 19 1 9.4319 -2.3099 3.6998 20 6 11.5586 -2.7245 3.4333 21 6 12.1582 -4.1467 3.4939 22 7 11.0509 -5.0217 3.8967 23 6 9.8628 -4.4181 3.7208 24 8 8.7860 -4.9193 3.9663 25 6 8.7232 -3.0285 -0.9391 26 6 8.0758 -2.1244 -1.9931 27 6 7.2900 -1.0280 -1.3026 28 8 5.9497 -1.4674 -1.1257 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3621 0.0014 31 1 3.8490 -3.0424 -0.8891 32 1 3.8484 -3.0426 0.8909 33 1 6.2368 -4.0405 -0.9501 34 1 6.0248 -4.1617 0.8129 35 1 10.0262 -2.0111 1.2695 36 1 10.3563 -3.7572 1.1671 37 1 11.9919 -2.1530 2.6124 38 1 11.6917 -2.2041 4.3817 39 1 12.9588 -4.1874 4.2324 40 1 12.5342 -4.4411 2.5141 41 1 11.1621 -5.9202 4.2449 42 1 9.6294 -2.5511 -0.5663 43 1 8.9854 -3.9801 -1.4015 44 1 7.4046 -2.7137 -2.6179 45 1 8.8523 -1.6784 -2.6144 46 1 7.3011 -0.1280 -1.9173 47 1 7.7358 -0.8153 -0.3311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200679461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:21 Heat of formation + Delta-G solvation = -85.359844 kcal Electronic energy + Delta-G solvation = -29026.551782 eV Core-core repulsion = 25017.311229 eV Total energy + Delta-G solvation = -4009.240553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.11727 -40.16239 -38.39889 -36.58316 -35.69646 -34.69100 -33.33003 -32.75258 -31.10063 -29.91631 -28.77884 -27.08022 -26.18201 -24.82777 -22.44479 -22.14638 -21.70176 -20.98276 -20.43578 -19.04240 -17.83242 -17.60733 -17.24107 -16.65189 -16.54924 -16.19047 -15.96419 -15.44592 -14.85869 -14.46321 -14.34253 -14.24288 -13.92353 -13.74174 -13.59362 -13.36724 -13.07553 -13.01919 -12.76221 -12.68140 -12.53550 -12.29064 -12.03120 -11.82198 -11.67382 -11.48976 -11.29818 -11.14877 -10.87372 -10.77217 -10.30562 -10.04724 -9.94333 -9.62368 -9.48655 -9.46033 -9.39608 -8.79177 -8.54943 -7.09945 -5.65669 -2.99526 2.44244 2.60044 2.83382 3.06366 3.47751 3.51923 3.53785 3.86834 3.91624 3.98002 4.23239 4.35322 4.54079 4.58392 4.64153 4.70958 4.77256 4.86016 4.87783 5.01270 5.05229 5.15614 5.26115 5.30541 5.32638 5.36931 5.40996 5.45559 5.56662 5.60814 5.64587 5.77224 5.88401 5.92667 6.02062 6.09068 6.50245 6.56228 6.65618 6.74202 6.75469 7.22096 7.90509 8.10023 8.11269 8.18585 8.53558 9.33704 10.06233 10.27579 11.52994 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.003065 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.106669 B = 9133.992597 C = 9664.358373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.002 3.998 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.239 4.239 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.171 3.829 11 C 0.085 3.915 12 H 0.051 0.949 13 C 0.084 3.916 14 N -0.614 5.614 15 C 0.492 3.508 16 O -0.496 6.496 17 C -0.123 4.123 18 C -0.111 4.111 19 H 0.114 0.886 20 C -0.131 4.131 21 C 0.102 3.898 22 N -0.743 5.743 23 C 0.516 3.484 24 O -0.492 6.492 25 C 0.107 3.893 26 C -0.167 4.167 27 C 0.073 3.927 28 O -0.372 6.372 29 H 0.258 0.742 30 H 0.364 0.636 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.408 0.592 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.171 -6.954 0.699 34.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.193 4.193 3 Si 0.718 3.282 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.369 4.369 8 H 0.108 0.892 9 N -0.395 5.395 10 C 0.043 3.957 11 C 0.025 3.975 12 H 0.069 0.931 13 C -0.040 4.040 14 N -0.349 5.349 15 C 0.278 3.722 16 O -0.369 6.369 17 C -0.163 4.163 18 C -0.133 4.133 19 H 0.132 0.868 20 C -0.169 4.169 21 C -0.023 4.023 22 N -0.401 5.401 23 C 0.300 3.700 24 O -0.363 6.363 25 C -0.016 4.016 26 C -0.206 4.206 27 C -0.004 4.004 28 O -0.290 6.290 29 H 0.068 0.932 30 H 0.197 0.803 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.246 0.754 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 32.772 -7.278 1.174 33.591 hybrid contribution 1.111 0.753 0.161 1.352 sum 33.883 -6.525 1.336 34.532 Atomic orbital electron populations 1.69707 1.05070 1.25686 1.58076 1.24645 0.95227 0.97181 1.02260 0.86489 0.79130 0.84909 0.77711 1.21090 1.21903 1.20455 1.19079 0.80593 0.94775 1.42409 0.89196 1.42548 1.03875 1.02122 1.90968 1.20599 0.85678 0.90086 0.99369 1.22332 0.96341 0.90807 0.88022 0.93136 1.22347 0.79345 0.98840 1.03470 1.47920 1.09151 1.71829 1.06010 1.20663 0.90444 0.78035 0.83028 1.90887 1.59841 1.45819 1.40303 1.21596 0.94689 1.04425 0.95621 1.21749 0.97941 0.97349 0.96308 0.86825 1.22706 0.93797 0.96393 1.04004 1.22014 0.89722 0.89926 1.00642 1.46291 1.07364 1.18536 1.67941 1.20715 0.83623 0.88039 0.77582 1.90862 1.26719 1.69646 1.49091 1.21883 0.92289 0.99703 0.87722 1.22446 1.01003 0.98652 0.98453 1.22127 0.83057 0.95952 0.99297 1.86416 1.27028 1.72022 1.43527 0.93182 0.80298 0.94739 0.93864 0.89916 0.88654 0.87777 0.88862 0.88911 0.89491 0.90357 0.91265 0.75368 0.90143 0.91645 0.89801 0.89695 0.89393 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.70 13.97 55.49 0.78 -29.93 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.89 23.50 27.74 -169.99 -4.71 18.78 16 4 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.28 -7.06 6.52 56.52 0.37 -6.69 16 7 C -0.24 -7.20 10.47 -15.06 -0.16 -7.36 16 8 H 0.09 2.87 8.06 -52.49 -0.42 2.44 16 9 N -0.75 -19.52 5.29 -59.91 -0.32 -19.84 16 10 C 0.17 3.65 5.95 -4.04 -0.02 3.62 16 11 C 0.09 1.50 2.73 -25.78 -0.07 1.43 16 12 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 13 C 0.08 1.22 4.87 -3.83 -0.02 1.20 16 14 N -0.61 -7.31 2.20 -172.70 -0.38 -7.69 16 15 C 0.49 6.42 7.41 -10.98 -0.08 6.33 16 16 O -0.50 -8.99 13.11 -16.70 -0.22 -9.21 16 17 C -0.12 -0.95 3.46 -27.88 -0.10 -1.05 16 18 C -0.11 -0.95 2.57 -90.63 -0.23 -1.18 16 19 H 0.11 1.17 8.02 -51.93 -0.42 0.76 16 20 C -0.13 -0.52 6.71 -25.10 -0.17 -0.69 16 21 C 0.10 0.37 7.78 -3.13 -0.02 0.34 16 22 N -0.74 -5.43 6.24 -59.21 -0.37 -5.80 16 23 C 0.52 6.05 7.39 -10.86 -0.08 5.97 16 24 O -0.49 -8.65 15.86 -16.71 -0.26 -8.91 16 25 C 0.11 0.82 5.96 -3.38 -0.02 0.80 16 26 C -0.17 -1.43 5.78 -27.36 -0.16 -1.58 16 27 C 0.07 0.87 6.37 36.42 0.23 1.10 16 28 O -0.37 -6.32 9.19 -26.53 -0.24 -6.57 16 29 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 30 H 0.36 9.41 5.39 -40.82 -0.22 9.19 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.10 8.11 -51.93 -0.42 0.67 16 34 H 0.10 1.56 7.27 -51.93 -0.38 1.18 16 35 H 0.10 0.52 7.40 -51.93 -0.38 0.13 16 36 H 0.09 0.54 8.05 -51.93 -0.42 0.12 16 37 H 0.09 0.16 7.90 -51.93 -0.41 -0.25 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 41 H 0.41 2.53 8.96 -40.82 -0.37 2.16 16 42 H 0.08 0.40 5.88 -51.93 -0.31 0.10 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.83 8.01 -51.93 -0.42 0.42 16 45 H 0.08 0.49 8.14 -51.94 -0.42 0.07 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.05 0.55 7.39 -51.93 -0.38 0.16 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -40.94 369.31 -8.68 -49.62 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.52 Total: 5.07 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -1.00 Total: 8.92 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.29 Total: -63.26 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.73 Total: -24.69 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -4.71 Total: 18.78 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -40.94 -8.68 -49.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200679461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.745 kcal (2) G-P(sol) polarization free energy of solvation -40.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds