Wall clock time and date at job start Fri Apr 10 2020 18:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99974 * 2 1 4 4 H 1.48504 * 109.47067 * 239.99667 * 3 2 1 5 5 H 1.48504 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47475 * 119.99491 * 3 2 1 7 7 C 1.38805 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00129 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99766 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47015 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46919 * 60.01193 * 11 10 9 13 13 C 1.54809 * 109.47131 * 180.02562 * 11 10 9 14 14 N 1.45121 * 109.53064 * 187.89498 * 13 11 10 15 15 C 1.34778 * 118.75656 * 90.70561 * 14 13 11 16 16 O 1.21274 * 120.00240 * 4.36408 * 15 14 13 17 17 C 1.50696 * 119.99691 * 184.35690 * 15 14 13 18 18 H 1.08996 * 109.40454 * 333.21722 * 17 15 14 19 19 C 1.53066 * 109.40253 * 213.47056 * 17 15 14 20 20 C 1.53339 * 108.42779 * 190.97552 * 19 17 15 21 21 C 1.52920 * 108.67630 * 67.53166 * 20 19 17 22 22 N 1.45772 * 110.42249 * 309.02840 * 21 20 19 23 23 C 1.33355 * 124.08825 * 19.57880 * 22 21 20 24 24 O 1.21284 * 118.24623 * 177.48441 * 23 22 21 25 25 C 1.47504 * 122.48199 * 270.98386 * 14 13 11 26 26 C 1.53201 * 111.24039 * 41.23517 * 25 14 13 27 27 C 1.51533 * 109.42846 * 40.26542 * 26 25 14 28 28 O 1.38011 * 109.46989 * 300.01419 * 11 10 9 29 29 H 0.97000 * 119.99781 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00154 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47194 * 60.00824 * 10 9 7 32 32 H 1.09000 * 109.47294 * 300.00417 * 10 9 7 33 33 H 1.08992 * 109.46001 * 67.87320 * 13 11 10 34 34 H 1.09006 * 109.44841 * 307.90445 * 13 11 10 35 35 H 1.09000 * 109.67307 * 310.70790 * 19 17 15 36 36 H 1.08998 * 109.67516 * 71.23777 * 19 17 15 37 37 H 1.09003 * 109.60927 * 187.28772 * 20 19 17 38 38 H 1.09008 * 109.60685 * 307.61084 * 20 19 17 39 39 H 1.08994 * 109.30394 * 69.55930 * 21 20 19 40 40 H 1.09006 * 109.30279 * 188.93969 * 21 20 19 41 41 H 0.96995 * 117.96987 * 199.31040 * 22 21 20 42 42 H 1.09009 * 109.16526 * 161.75592 * 25 14 13 43 43 H 1.09002 * 109.16696 * 280.94949 * 25 14 13 44 44 H 1.08996 * 109.60564 * 280.22711 * 26 25 14 45 45 H 1.08998 * 109.42582 * 160.18860 * 26 25 14 46 46 H 1.08998 * 109.58873 * 148.72830 * 27 26 25 47 47 H 1.08995 * 109.71318 * 28.36123 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8196 -0.0001 12 1 0.4377 -4.7618 -0.8904 13 6 1.8380 -6.1603 0.0005 14 7 0.9075 -7.2579 -0.1879 15 6 0.6442 -7.6767 -1.4416 16 8 1.2398 -7.1923 -2.3805 17 6 -0.3903 -8.7470 -1.6768 18 1 -0.4681 -9.3764 -0.7903 19 6 0.0290 -9.6055 -2.8726 20 6 -1.1526 -10.5006 -3.2648 21 6 -2.2731 -9.6184 -3.8168 22 7 -2.5605 -8.5254 -2.8960 23 6 -1.7198 -8.1042 -1.9504 24 8 -2.0486 -7.1543 -1.2718 25 6 0.2345 -7.9284 0.9404 26 6 -0.2258 -6.9154 1.9935 27 6 -0.7818 -5.6870 1.3020 28 8 0.2698 -4.7466 1.1263 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6847 -3.7145 0.8906 32 1 2.6848 -3.7144 -0.8894 33 1 2.3541 -6.2812 0.9529 34 1 2.5669 -6.1589 -0.8099 35 1 0.2958 -8.9618 -3.7109 36 1 0.8832 -10.2245 -2.5984 37 1 -0.8360 -11.2104 -4.0290 38 1 -1.5084 -11.0418 -2.3880 39 1 -1.9694 -9.2115 -4.7812 40 1 -3.1726 -10.2196 -3.9500 41 1 -3.4149 -8.0738 -2.9785 42 1 -0.6317 -8.4748 0.5669 43 1 0.9271 -8.6312 1.4037 44 1 0.6193 -6.6286 2.6191 45 1 -1.0011 -7.3646 2.6141 46 1 -1.5674 -5.2463 1.9157 47 1 -1.1898 -5.9651 0.3303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200737532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:30 Heat of formation + Delta-G solvation = -90.944436 kcal Electronic energy + Delta-G solvation = -29590.167139 eV Core-core repulsion = 25580.684420 eV Total energy + Delta-G solvation = -4009.482719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39040 -39.77879 -38.25762 -36.81119 -35.58109 -34.44968 -33.52081 -32.67474 -30.80986 -30.49279 -28.63492 -26.66647 -25.66754 -24.55036 -23.18248 -22.59310 -21.61037 -20.76185 -20.12563 -18.74985 -17.93342 -17.46936 -17.05770 -16.79739 -16.34860 -16.17372 -15.55029 -15.39803 -14.69166 -14.60657 -14.48952 -14.20994 -14.14756 -13.91129 -13.59740 -13.40568 -13.01732 -12.93418 -12.48080 -12.41080 -12.20602 -11.91284 -11.81554 -11.78306 -11.64083 -11.36357 -11.08707 -10.80796 -10.68684 -10.68289 -10.18629 -9.99741 -9.94790 -9.76630 -9.56184 -9.43070 -9.19228 -8.72647 -8.44488 -6.73602 -5.59011 -2.87024 2.10629 2.43353 2.91126 3.05452 3.54921 3.57922 3.59891 4.01775 4.16315 4.18874 4.21058 4.27965 4.55166 4.65334 4.70578 4.78035 4.87137 4.90632 5.09486 5.12420 5.26994 5.31300 5.35620 5.42994 5.45490 5.56103 5.63967 5.70787 5.73795 5.78314 5.81062 6.01334 6.13019 6.22663 6.29928 6.46062 6.47006 6.57753 6.78454 6.91156 6.93046 7.22296 7.82852 7.88793 8.04737 8.23521 8.59263 9.70287 10.30457 10.66835 11.63858 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.003153 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.641575 B = 8876.978158 C = 9208.307293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.166 3.834 11 C 0.091 3.909 12 H 0.050 0.950 13 C 0.080 3.920 14 N -0.596 5.596 15 C 0.530 3.470 16 O -0.526 6.526 17 C -0.131 4.131 18 H 0.124 0.876 19 C -0.112 4.112 20 C -0.136 4.136 21 C 0.107 3.893 22 N -0.716 5.716 23 C 0.531 3.469 24 O -0.532 6.532 25 C 0.107 3.893 26 C -0.162 4.162 27 C 0.060 3.940 28 O -0.369 6.369 29 H 0.254 0.746 30 H 0.388 0.612 31 H 0.026 0.974 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.404 0.596 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 -29.774 -3.390 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.369 5.369 10 C 0.038 3.962 11 C 0.031 3.969 12 H 0.068 0.932 13 C -0.043 4.043 14 N -0.328 5.328 15 C 0.315 3.685 16 O -0.402 6.402 17 C -0.155 4.155 18 H 0.142 0.858 19 C -0.150 4.150 20 C -0.173 4.173 21 C -0.017 4.017 22 N -0.369 5.369 23 C 0.316 3.684 24 O -0.408 6.408 25 C -0.016 4.016 26 C -0.200 4.200 27 C -0.017 4.017 28 O -0.287 6.287 29 H 0.064 0.936 30 H 0.222 0.778 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.240 0.760 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.211 -28.872 -3.353 29.370 hybrid contribution -0.332 0.640 -0.153 0.737 sum -4.543 -28.232 -3.506 28.809 Atomic orbital electron populations 1.69683 1.05073 1.25471 1.57854 1.24737 0.95503 0.97567 1.03341 0.86261 0.78452 0.83685 0.77749 1.21368 1.21781 1.21356 1.19200 0.90935 0.84214 1.42419 0.91284 1.42216 1.06118 0.99433 1.89150 1.20611 0.92403 0.84861 0.98321 1.22217 0.92437 0.93633 0.88656 0.93208 1.22480 0.92418 0.86125 1.03319 1.47791 1.44418 1.34776 1.05843 1.19814 0.82778 0.82717 0.83152 1.90727 1.50695 1.57311 1.41485 1.21524 0.93185 0.98031 1.02787 0.85822 1.21613 0.98352 0.97777 0.97250 1.21895 0.95019 0.97973 1.02456 1.21445 0.99267 0.88253 0.92764 1.45348 1.20611 1.36534 1.34435 1.19406 0.85280 0.83498 0.80169 1.90802 1.75502 1.26974 1.47521 1.21957 0.96863 0.95153 0.87598 1.22377 1.02396 0.97190 0.98056 1.22315 0.89520 0.88483 1.01368 1.86403 1.44666 1.54656 1.42967 0.93628 0.77792 0.95662 0.94980 0.89768 0.88791 0.89244 0.90051 0.89124 0.90777 0.91207 0.90246 0.75954 0.90164 0.91569 0.90203 0.89970 0.89866 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.24 13.06 55.49 0.72 -29.52 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 23.71 29.55 -169.99 -5.02 18.68 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.24 -7.17 9.99 -15.06 -0.15 -7.32 16 8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.72 -20.64 5.49 -59.91 -0.33 -20.97 16 10 C 0.17 3.83 5.95 -4.04 -0.02 3.80 16 11 C 0.09 1.83 2.74 -25.78 -0.07 1.76 16 12 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 13 C 0.08 1.27 4.90 -3.83 -0.02 1.25 16 14 N -0.60 -8.19 2.20 -172.70 -0.38 -8.57 16 15 C 0.53 7.58 6.17 -10.99 -0.07 7.52 16 16 O -0.53 -9.43 15.43 5.56 0.09 -9.35 16 17 C -0.13 -1.31 1.98 -93.14 -0.18 -1.49 16 18 H 0.12 0.90 5.91 -51.93 -0.31 0.59 16 19 C -0.11 -0.84 5.15 -26.52 -0.14 -0.97 16 20 C -0.14 -0.58 6.02 -26.60 -0.16 -0.74 16 21 C 0.11 0.51 7.17 -4.48 -0.03 0.48 16 22 N -0.72 -5.89 5.45 -61.37 -0.33 -6.23 16 23 C 0.53 6.19 7.21 -11.87 -0.09 6.11 16 24 O -0.53 -8.33 14.80 5.55 0.08 -8.25 16 25 C 0.11 1.11 5.82 -3.39 -0.02 1.09 16 26 C -0.16 -1.91 5.78 -27.37 -0.16 -2.06 16 27 C 0.06 0.98 6.37 36.42 0.23 1.21 16 28 O -0.37 -7.50 9.18 -26.52 -0.24 -7.74 16 29 H 0.25 7.92 8.31 -40.82 -0.34 7.58 16 30 H 0.39 11.85 7.53 -40.82 -0.31 11.54 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 34 H 0.09 1.54 7.22 -51.93 -0.37 1.16 16 35 H 0.09 0.86 7.46 -51.93 -0.39 0.48 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.07 0.26 8.13 -51.92 -0.42 -0.16 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.40 3.05 8.80 -40.82 -0.36 2.69 16 42 H 0.08 0.73 5.25 -51.92 -0.27 0.45 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.08 1.37 5.04 -51.93 -0.26 1.10 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -38.84 366.23 -8.17 -47.02 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.30 Total: 9.37 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -0.97 Total: 10.04 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.32 Total: -65.29 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.08 Total: -25.34 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.02 Total: 18.68 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.84 -8.17 -47.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200737532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.928 kcal (2) G-P(sol) polarization free energy of solvation -38.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds