Wall clock time and date at job start Fri Apr 10 2020 18:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99974 * 2 1 4 4 H 1.48504 * 109.47067 * 239.99667 * 3 2 1 5 5 H 1.48504 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47475 * 119.99491 * 3 2 1 7 7 C 1.38805 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00129 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99766 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47015 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46919 * 60.01193 * 11 10 9 13 13 C 1.54809 * 109.47131 * 180.02562 * 11 10 9 14 14 N 1.45121 * 109.53064 * 187.89498 * 13 11 10 15 15 C 1.34778 * 118.75656 * 90.70561 * 14 13 11 16 16 O 1.21274 * 120.00240 * 4.36408 * 15 14 13 17 17 C 1.50696 * 119.99691 * 184.35690 * 15 14 13 18 18 H 1.08996 * 109.40454 * 333.21722 * 17 15 14 19 19 C 1.53066 * 109.40253 * 213.47056 * 17 15 14 20 20 C 1.53339 * 108.42779 * 190.97552 * 19 17 15 21 21 C 1.52920 * 108.67630 * 67.53166 * 20 19 17 22 22 N 1.45772 * 110.42249 * 309.02840 * 21 20 19 23 23 C 1.33355 * 124.08825 * 19.57880 * 22 21 20 24 24 O 1.21284 * 118.24623 * 177.48441 * 23 22 21 25 25 C 1.47504 * 122.48199 * 270.98386 * 14 13 11 26 26 C 1.53201 * 111.24039 * 41.23517 * 25 14 13 27 27 C 1.51533 * 109.42846 * 40.26542 * 26 25 14 28 28 O 1.38011 * 109.46989 * 300.01419 * 11 10 9 29 29 H 0.97000 * 119.99781 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00154 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47194 * 60.00824 * 10 9 7 32 32 H 1.09000 * 109.47294 * 300.00417 * 10 9 7 33 33 H 1.08992 * 109.46001 * 67.87320 * 13 11 10 34 34 H 1.09006 * 109.44841 * 307.90445 * 13 11 10 35 35 H 1.09000 * 109.67307 * 310.70790 * 19 17 15 36 36 H 1.08998 * 109.67516 * 71.23777 * 19 17 15 37 37 H 1.09003 * 109.60927 * 187.28772 * 20 19 17 38 38 H 1.09008 * 109.60685 * 307.61084 * 20 19 17 39 39 H 1.08994 * 109.30394 * 69.55930 * 21 20 19 40 40 H 1.09006 * 109.30279 * 188.93969 * 21 20 19 41 41 H 0.96995 * 117.96987 * 199.31040 * 22 21 20 42 42 H 1.09009 * 109.16526 * 161.75592 * 25 14 13 43 43 H 1.09002 * 109.16696 * 280.94949 * 25 14 13 44 44 H 1.08996 * 109.60564 * 280.22711 * 26 25 14 45 45 H 1.08998 * 109.42582 * 160.18860 * 26 25 14 46 46 H 1.08998 * 109.58873 * 148.72830 * 27 26 25 47 47 H 1.08995 * 109.71318 * 28.36123 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8196 -0.0001 12 1 0.4377 -4.7618 -0.8904 13 6 1.8380 -6.1603 0.0005 14 7 0.9075 -7.2579 -0.1879 15 6 0.6442 -7.6767 -1.4416 16 8 1.2398 -7.1923 -2.3805 17 6 -0.3903 -8.7470 -1.6768 18 1 -0.4681 -9.3764 -0.7903 19 6 0.0290 -9.6055 -2.8726 20 6 -1.1526 -10.5006 -3.2648 21 6 -2.2731 -9.6184 -3.8168 22 7 -2.5605 -8.5254 -2.8960 23 6 -1.7198 -8.1042 -1.9504 24 8 -2.0486 -7.1543 -1.2718 25 6 0.2345 -7.9284 0.9404 26 6 -0.2258 -6.9154 1.9935 27 6 -0.7818 -5.6870 1.3020 28 8 0.2698 -4.7466 1.1263 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6847 -3.7145 0.8906 32 1 2.6848 -3.7144 -0.8894 33 1 2.3541 -6.2812 0.9529 34 1 2.5669 -6.1589 -0.8099 35 1 0.2958 -8.9618 -3.7109 36 1 0.8832 -10.2245 -2.5984 37 1 -0.8360 -11.2104 -4.0290 38 1 -1.5084 -11.0418 -2.3880 39 1 -1.9694 -9.2115 -4.7812 40 1 -3.1726 -10.2196 -3.9500 41 1 -3.4149 -8.0738 -2.9785 42 1 -0.6317 -8.4748 0.5669 43 1 0.9271 -8.6312 1.4037 44 1 0.6193 -6.6286 2.6191 45 1 -1.0011 -7.3646 2.6141 46 1 -1.5674 -5.2463 1.9157 47 1 -1.1898 -5.9651 0.3303 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200737532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:29 Heat of formation + Delta-G solvation = -121.875142 kcal Electronic energy + Delta-G solvation = -29591.508395 eV Core-core repulsion = 25580.684420 eV Total energy + Delta-G solvation = -4010.823975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.34532 -40.87485 -39.54665 -37.55589 -36.94754 -36.26446 -34.51104 -34.02982 -32.68970 -31.29078 -30.07960 -27.96789 -26.83881 -25.86311 -24.41640 -23.78082 -22.89728 -22.30819 -20.96311 -19.59854 -19.27616 -18.88573 -18.28798 -17.85267 -17.57963 -17.47656 -16.75581 -16.57447 -16.26464 -15.75078 -15.53689 -15.23828 -15.15937 -14.97460 -14.83038 -14.66411 -14.55493 -14.33858 -13.92188 -13.64780 -13.37690 -13.16174 -13.03795 -12.73853 -12.64733 -12.46266 -12.32846 -12.27562 -12.21651 -12.06209 -11.86975 -11.76754 -11.45989 -11.01973 -10.98525 -10.82113 -10.54895 -10.10678 -9.68393 -9.04025 -7.94798 -5.26016 1.11977 1.44334 1.50314 1.51048 1.56189 1.92367 2.33451 2.55248 2.72090 3.19795 3.37653 3.48267 3.60158 3.62844 3.76824 3.86742 3.94992 4.01887 4.05202 4.12040 4.16796 4.31248 4.35287 4.48935 4.50155 4.57718 4.68649 4.71106 4.73994 4.81243 4.82171 4.84257 4.99779 5.05751 5.06497 5.10672 5.18962 5.31076 5.44111 5.45999 5.76576 6.15746 6.21498 6.24570 6.74387 6.95862 7.09956 7.30100 8.04114 8.30333 9.29172 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.003153 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.641575 B = 8876.978158 C = 9208.307293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.984 3.016 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.251 4.251 8 H 0.080 0.920 9 N -0.742 5.742 10 C 0.164 3.836 11 C 0.106 3.894 12 H 0.006 0.994 13 C 0.094 3.906 14 N -0.598 5.598 15 C 0.520 3.480 16 O -0.574 6.574 17 C -0.123 4.123 18 H 0.158 0.842 19 C -0.111 4.111 20 C -0.127 4.127 21 C 0.097 3.903 22 N -0.708 5.708 23 C 0.522 3.478 24 O -0.584 6.584 25 C 0.102 3.898 26 C -0.152 4.152 27 C 0.051 3.949 28 O -0.396 6.396 29 H 0.251 0.749 30 H 0.372 0.628 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.406 0.594 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.080 0.920 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.192 -32.864 -2.734 33.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.812 3.188 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.383 4.383 8 H 0.098 0.902 9 N -0.384 5.384 10 C 0.037 3.963 11 C 0.046 3.954 12 H 0.024 0.976 13 C -0.031 4.031 14 N -0.329 5.329 15 C 0.308 3.692 16 O -0.454 6.454 17 C -0.147 4.147 18 H 0.176 0.824 19 C -0.149 4.149 20 C -0.164 4.164 21 C -0.026 4.026 22 N -0.359 5.359 23 C 0.307 3.693 24 O -0.465 6.465 25 C -0.019 4.019 26 C -0.190 4.190 27 C -0.025 4.025 28 O -0.315 6.315 29 H 0.060 0.940 30 H 0.203 0.797 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.242 0.758 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.133 0.867 46 H 0.098 0.902 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.635 -32.055 -2.710 32.374 hybrid contribution -0.582 1.559 -0.402 1.712 sum -4.217 -30.495 -3.112 30.942 Atomic orbital electron populations 1.69883 1.06969 1.26188 1.59311 1.25736 0.96501 1.01582 1.03429 0.85060 0.77066 0.78303 0.78378 1.20159 1.21952 1.19923 1.19692 0.91648 0.85196 1.41718 0.90189 1.42441 1.05574 1.01025 1.89337 1.20767 0.93003 0.84023 0.98549 1.21870 0.91614 0.95017 0.86942 0.97622 1.22153 0.92069 0.84668 1.04200 1.47929 1.44024 1.33911 1.06998 1.20639 0.82866 0.83134 0.82609 1.90695 1.52564 1.59176 1.42914 1.21576 0.90723 0.96950 1.05437 0.82449 1.21655 1.00530 0.97569 0.95106 1.21930 0.93068 0.97450 1.03982 1.21795 1.01251 0.87685 0.91821 1.45455 1.20002 1.36833 1.33566 1.19780 0.86047 0.83079 0.80354 1.90787 1.76670 1.29253 1.49764 1.22273 0.98310 0.94999 0.86280 1.22295 1.03149 0.95231 0.98301 1.22529 0.88857 0.89911 1.01167 1.86320 1.45753 1.56954 1.42521 0.94000 0.79706 0.94515 0.94753 0.87322 0.89676 0.92161 0.88401 0.86550 0.88929 0.91302 0.86981 0.75802 0.88489 0.87584 0.90213 0.86691 0.90181 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.16 13.06 21.65 0.28 -64.87 16 2 C -0.08 -5.05 5.50 84.86 0.47 -4.59 16 3 Si 0.98 49.43 29.55 68.60 2.03 51.46 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 6 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.25 -15.55 9.99 84.03 0.84 -14.71 16 8 H 0.08 4.66 7.83 -2.91 -0.02 4.63 16 9 N -0.74 -44.04 5.49 -343.45 -1.88 -45.93 16 10 C 0.16 7.82 5.95 86.38 0.51 8.33 16 11 C 0.11 4.47 2.74 31.21 0.09 4.56 16 12 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 13 C 0.09 2.98 4.90 87.26 0.43 3.41 16 14 N -0.60 -15.99 2.20 -818.69 -1.80 -17.80 16 15 C 0.52 14.91 6.17 87.66 0.54 15.45 16 16 O -0.57 -21.53 15.43 -3.01 -0.05 -21.58 16 17 C -0.12 -2.28 1.98 -12.43 -0.02 -2.31 16 18 H 0.16 1.74 5.91 -2.39 -0.01 1.72 16 19 C -0.11 -1.44 5.15 30.73 0.16 -1.28 16 20 C -0.13 -0.63 6.02 30.68 0.18 -0.44 16 21 C 0.10 0.69 7.17 86.49 0.62 1.31 16 22 N -0.71 -10.94 5.45 -467.26 -2.55 -13.49 16 23 C 0.52 11.99 7.21 87.72 0.63 12.62 16 24 O -0.58 -18.97 14.80 -3.04 -0.05 -19.02 16 25 C 0.10 1.83 5.82 86.25 0.50 2.33 16 26 C -0.15 -3.25 5.78 30.18 0.17 -3.08 16 27 C 0.05 1.71 6.37 71.50 0.46 2.16 16 28 O -0.40 -16.76 9.18 -117.82 -1.08 -17.84 16 29 H 0.25 16.15 8.31 -92.71 -0.77 15.38 16 30 H 0.37 24.06 7.53 -92.71 -0.70 23.36 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.11 2.91 8.11 -2.39 -0.02 2.89 16 34 H 0.08 2.86 7.22 -2.38 -0.02 2.84 16 35 H 0.06 1.16 7.46 -2.39 -0.02 1.14 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.09 0.19 8.13 -2.38 -0.02 0.18 16 39 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 41 H 0.41 5.97 8.80 -92.71 -0.82 5.16 16 42 H 0.10 1.44 5.25 -2.38 -0.01 1.42 16 43 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.08 1.75 8.01 -2.39 -0.02 1.74 16 45 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 47 H 0.06 2.26 5.04 -2.39 -0.01 2.25 16 Total: -1.00 -90.78 366.23 -0.03 -90.81 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.51 Total: 34.49 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: 5.58 Total: 23.77 kcal Atomic # 7 Polarization: -136.14 SS G_CDS: -5.95 Total: -142.09 kcal Atomic # 8 Polarization: -57.26 SS G_CDS: -1.17 Total: -58.44 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.03 Total: 51.46 kcal Total: -90.78 -0.03 -90.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200737532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.067 kcal (2) G-P(sol) polarization free energy of solvation -90.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds