Wall clock time and date at job start Fri Apr 10 2020 18:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00186 * 2 1 4 4 H 1.48498 * 109.47401 * 270.00238 * 3 2 1 5 5 H 1.48507 * 109.47366 * 30.00142 * 3 2 1 6 6 H 1.48500 * 109.47379 * 149.99949 * 3 2 1 7 7 C 1.38818 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99809 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99588 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46890 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46897 * 60.00783 * 11 10 9 13 13 C 1.54803 * 109.46795 * 180.02562 * 11 10 9 14 14 N 1.45119 * 109.52962 * 187.89409 * 13 11 10 15 15 C 1.34772 * 118.75897 * 90.70569 * 14 13 11 16 16 O 1.21280 * 119.99860 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00313 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.47210 * 180.02562 * 17 15 14 19 19 H 1.09003 * 110.28998 * 53.02414 * 18 17 15 20 20 C 1.54476 * 110.24399 * 174.99889 * 18 17 15 21 21 C 1.54627 * 101.76424 * 144.41536 * 20 18 17 22 22 C 1.51285 * 104.19738 * 335.19969 * 21 20 18 23 23 O 1.21276 * 124.94475 * 196.20555 * 22 21 20 24 24 N 1.34424 * 110.10841 * 16.25598 * 22 21 20 25 25 C 1.47509 * 122.48481 * 270.98533 * 14 13 11 26 26 C 1.53208 * 111.23679 * 41.23576 * 25 14 13 27 27 C 1.51525 * 109.43239 * 40.26410 * 26 25 14 28 28 O 1.38011 * 109.46595 * 300.01571 * 11 10 9 29 29 H 0.97005 * 119.99921 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00005 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46711 * 60.01025 * 10 9 7 32 32 H 1.08998 * 109.47191 * 300.00941 * 10 9 7 33 33 H 1.08996 * 109.45766 * 67.87414 * 13 11 10 34 34 H 1.08998 * 109.45087 * 307.90590 * 13 11 10 35 35 H 1.08994 * 109.46911 * 60.00321 * 17 15 14 36 36 H 1.09001 * 109.46686 * 300.00450 * 17 15 14 37 37 H 1.09005 * 110.97268 * 26.29655 * 20 18 17 38 38 H 1.08997 * 110.97040 * 262.53399 * 20 18 17 39 39 H 1.09001 * 110.48777 * 93.88219 * 21 20 18 40 40 H 1.09000 * 110.48903 * 216.52672 * 21 20 18 41 41 H 0.97008 * 124.34213 * 180.40711 * 24 22 21 42 42 H 1.09003 * 109.16624 * 161.74895 * 25 14 13 43 43 H 1.08990 * 109.16851 * 280.95428 * 25 14 13 44 44 H 1.09002 * 109.60424 * 280.22609 * 26 25 14 45 45 H 1.09000 * 109.42878 * 160.19170 * 26 25 14 46 46 H 1.09003 * 109.59295 * 148.72451 * 27 26 25 47 47 H 1.09006 * 109.59351 * 28.28904 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 6 1.0637 -4.8198 -0.0021 12 1 0.4368 -4.7614 -0.8919 13 6 1.8377 -6.1604 -0.0026 14 7 0.9070 -7.2578 -0.1908 15 6 0.6427 -7.6761 -1.4444 16 8 1.1794 -7.1374 -2.3892 17 6 -0.3198 -8.8131 -1.6723 18 6 -0.4398 -9.0868 -3.1728 19 1 0.5477 -9.2336 -3.6104 20 6 -1.3242 -10.3289 -3.4205 21 6 -2.0611 -9.9367 -4.7221 22 6 -2.0423 -8.4240 -4.7177 23 8 -2.7471 -7.7185 -5.4080 24 7 -1.1300 -7.9757 -3.8381 25 6 0.2348 -7.9289 0.9377 26 6 -0.2247 -6.9162 1.9916 27 6 -0.7810 -5.6875 1.3011 28 8 0.2705 -4.7471 1.1250 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6852 -3.7150 0.8879 32 1 2.6841 -3.7141 -0.8921 33 1 2.3545 -6.2816 0.9493 34 1 2.5660 -6.1587 -0.8136 35 1 -1.2979 -8.5468 -1.2718 36 1 0.0481 -9.7069 -1.1684 37 1 -2.0292 -10.4754 -2.6021 38 1 -0.7134 -11.2190 -3.5711 39 1 -1.5299 -10.3223 -5.5923 40 1 -3.0867 -10.3054 -4.7058 41 1 -0.9510 -7.0380 -3.6653 42 1 -0.6317 -8.4750 0.5647 43 1 0.9277 -8.6318 1.4002 44 1 0.6210 -6.6298 2.6167 45 1 -0.9995 -7.3657 2.6127 46 1 -1.5663 -5.2471 1.9156 47 1 -1.1880 -5.9671 0.3293 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201620531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:57 Heat of formation + Delta-G solvation = -96.469845 kcal Electronic energy + Delta-G solvation = -28743.396274 eV Core-core repulsion = 24733.673955 eV Total energy + Delta-G solvation = -4009.722318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.07947 -40.19610 -38.57950 -36.74960 -35.76408 -34.60531 -32.95304 -31.65192 -31.54004 -30.90879 -28.84584 -26.89810 -25.92546 -24.65380 -22.74567 -21.81037 -21.66614 -20.96187 -20.73504 -19.18075 -17.76238 -17.33583 -17.10516 -16.91467 -16.50114 -16.36111 -15.89947 -15.22304 -14.92217 -14.73888 -14.35059 -14.16672 -13.88294 -13.78060 -13.62436 -13.24136 -13.11625 -12.96632 -12.95815 -12.69759 -12.47610 -12.20669 -12.00489 -11.84361 -11.66153 -11.48407 -11.37720 -11.01591 -10.81616 -10.75494 -10.30835 -10.07397 -10.03142 -9.89484 -9.65674 -9.45118 -9.31010 -8.81557 -8.64775 -6.83256 -5.67747 -2.96057 2.35832 2.43423 2.71558 3.17870 3.49311 3.53700 3.55749 3.85194 3.92428 4.02194 4.18361 4.32887 4.49548 4.57937 4.65963 4.70701 4.78227 4.80849 4.87332 4.95937 5.18265 5.25074 5.26896 5.28150 5.30765 5.38856 5.42372 5.42895 5.55174 5.63653 5.64987 5.79319 5.91138 5.94582 6.06037 6.33904 6.39494 6.63328 6.65043 6.77364 6.89829 7.08495 7.75868 7.92226 7.97944 8.10065 8.50457 9.61998 10.20202 10.56164 11.55123 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013700 B = 0.003045 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.330479 B = 9194.652385 C =10376.109076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.166 3.834 11 C 0.090 3.910 12 H 0.050 0.950 13 C 0.080 3.920 14 N -0.608 5.608 15 C 0.503 3.497 16 O -0.530 6.530 17 C -0.153 4.153 18 C 0.146 3.854 19 H 0.092 0.908 20 C -0.129 4.129 21 C -0.156 4.156 22 C 0.515 3.485 23 O -0.537 6.537 24 N -0.719 5.719 25 C 0.105 3.895 26 C -0.168 4.168 27 C 0.073 3.927 28 O -0.367 6.367 29 H 0.254 0.746 30 H 0.387 0.613 31 H 0.026 0.974 32 H 0.034 0.966 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.416 0.584 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.333 -29.182 0.939 29.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.038 3.962 11 C 0.029 3.971 12 H 0.068 0.932 13 C -0.044 4.044 14 N -0.341 5.341 15 C 0.291 3.709 16 O -0.407 6.407 17 C -0.193 4.193 18 C 0.040 3.960 19 H 0.110 0.890 20 C -0.167 4.167 21 C -0.196 4.196 22 C 0.301 3.699 23 O -0.414 6.414 24 N -0.375 5.375 25 C -0.018 4.018 26 C -0.206 4.206 27 C -0.004 4.004 28 O -0.285 6.285 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.256 0.744 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.256 -28.387 0.208 28.477 hybrid contribution 0.240 1.007 0.149 1.046 sum -2.016 -27.380 0.357 27.456 Atomic orbital electron populations 1.69681 1.05104 1.25493 1.57766 1.24741 0.95519 0.97639 1.03145 0.86181 0.78597 0.83882 0.77476 1.21764 1.21815 1.20797 1.19227 0.90978 0.84143 1.42581 0.91208 1.42206 1.06046 0.99455 1.89250 1.20611 0.92358 0.84755 0.98476 1.22266 0.92529 0.94031 0.88235 0.93192 1.22448 0.92496 0.86013 1.03402 1.47969 1.44892 1.35086 1.06135 1.20708 0.82684 0.84642 0.82883 1.90763 1.51481 1.57555 1.40862 1.22175 1.00611 0.98773 0.97780 1.21439 0.97231 0.86359 0.90983 0.89049 1.22715 0.98924 0.97323 0.97748 1.22352 1.03733 0.93830 0.99723 1.20885 0.79004 0.91112 0.78928 1.90776 1.43604 1.63572 1.43401 1.46380 1.38961 1.09967 1.42197 1.21947 0.97167 0.95021 0.87644 1.22457 1.02828 0.96923 0.98408 1.22118 0.89964 0.89027 0.99249 1.86458 1.44479 1.54344 1.43172 0.93603 0.77874 0.95629 0.94848 0.89845 0.88775 0.88016 0.87253 0.89652 0.88852 0.87739 0.88008 0.74358 0.89953 0.91328 0.89820 0.89610 0.89244 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.35 13.06 55.49 0.72 -28.62 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 4 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -19.54 5.49 -59.90 -0.33 -19.87 16 10 C 0.17 3.53 5.95 -4.04 -0.02 3.51 16 11 C 0.09 1.56 2.73 -25.78 -0.07 1.49 16 12 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 13 C 0.08 1.07 4.87 -3.83 -0.02 1.05 16 14 N -0.61 -6.34 2.20 -172.70 -0.38 -6.72 16 15 C 0.50 5.42 7.46 -10.99 -0.08 5.34 16 16 O -0.53 -7.85 14.46 5.56 0.08 -7.77 16 17 C -0.15 -0.94 3.64 -27.88 -0.10 -1.04 16 18 C 0.15 1.03 3.00 -67.02 -0.20 0.83 16 19 H 0.09 0.71 7.91 -51.93 -0.41 0.30 16 20 C -0.13 -0.52 6.69 -25.10 -0.17 -0.69 16 21 C -0.16 -1.01 6.86 -26.74 -0.18 -1.20 16 22 C 0.51 6.05 8.43 -10.86 -0.09 5.96 16 23 O -0.54 -8.99 18.03 5.56 0.10 -8.89 16 24 N -0.72 -7.71 5.62 -52.77 -0.30 -8.01 16 25 C 0.10 0.72 5.96 -3.38 -0.02 0.70 16 26 C -0.17 -1.42 5.78 -27.37 -0.16 -1.58 16 27 C 0.07 0.92 6.37 36.41 0.23 1.15 16 28 O -0.37 -6.39 9.18 -26.52 -0.24 -6.63 16 29 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.39 11.13 7.53 -40.82 -0.31 10.83 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.02 8.11 -51.93 -0.42 0.59 16 34 H 0.09 1.35 7.27 -51.93 -0.38 0.97 16 35 H 0.10 0.54 7.40 -51.93 -0.38 0.16 16 36 H 0.11 0.34 8.05 -51.93 -0.42 -0.08 16 37 H 0.08 0.24 7.91 -51.93 -0.41 -0.17 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.42 5.37 8.12 -40.82 -0.33 5.04 16 42 H 0.08 0.37 5.88 -51.93 -0.31 0.06 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.04 0.56 7.39 -51.93 -0.38 0.17 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -38.23 375.16 -8.36 -46.59 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.52 Total: 8.26 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -1.13 Total: 7.87 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.28 Total: -63.22 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.06 Total: -23.30 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.23 -8.36 -46.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201620531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.878 kcal (2) G-P(sol) polarization free energy of solvation -38.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds