Wall clock time and date at job start Fri Apr 10 2020 18:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00186 * 2 1 4 4 H 1.48498 * 109.47401 * 270.00238 * 3 2 1 5 5 H 1.48507 * 109.47366 * 30.00142 * 3 2 1 6 6 H 1.48500 * 109.47379 * 149.99949 * 3 2 1 7 7 C 1.38818 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99809 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99588 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46890 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46897 * 60.00783 * 11 10 9 13 13 C 1.54803 * 109.46795 * 180.02562 * 11 10 9 14 14 N 1.45119 * 109.52962 * 187.89409 * 13 11 10 15 15 C 1.34772 * 118.75897 * 90.70569 * 14 13 11 16 16 O 1.21280 * 119.99860 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00313 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.47210 * 180.02562 * 17 15 14 19 19 H 1.09003 * 110.28998 * 53.02414 * 18 17 15 20 20 C 1.54476 * 110.24399 * 174.99889 * 18 17 15 21 21 C 1.54627 * 101.76424 * 144.41536 * 20 18 17 22 22 C 1.51285 * 104.19738 * 335.19969 * 21 20 18 23 23 O 1.21276 * 124.94475 * 196.20555 * 22 21 20 24 24 N 1.34424 * 110.10841 * 16.25598 * 22 21 20 25 25 C 1.47509 * 122.48481 * 270.98533 * 14 13 11 26 26 C 1.53208 * 111.23679 * 41.23576 * 25 14 13 27 27 C 1.51525 * 109.43239 * 40.26410 * 26 25 14 28 28 O 1.38011 * 109.46595 * 300.01571 * 11 10 9 29 29 H 0.97005 * 119.99921 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00005 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46711 * 60.01025 * 10 9 7 32 32 H 1.08998 * 109.47191 * 300.00941 * 10 9 7 33 33 H 1.08996 * 109.45766 * 67.87414 * 13 11 10 34 34 H 1.08998 * 109.45087 * 307.90590 * 13 11 10 35 35 H 1.08994 * 109.46911 * 60.00321 * 17 15 14 36 36 H 1.09001 * 109.46686 * 300.00450 * 17 15 14 37 37 H 1.09005 * 110.97268 * 26.29655 * 20 18 17 38 38 H 1.08997 * 110.97040 * 262.53399 * 20 18 17 39 39 H 1.09001 * 110.48777 * 93.88219 * 21 20 18 40 40 H 1.09000 * 110.48903 * 216.52672 * 21 20 18 41 41 H 0.97008 * 124.34213 * 180.40711 * 24 22 21 42 42 H 1.09003 * 109.16624 * 161.74895 * 25 14 13 43 43 H 1.08990 * 109.16851 * 280.95428 * 25 14 13 44 44 H 1.09002 * 109.60424 * 280.22609 * 26 25 14 45 45 H 1.09000 * 109.42878 * 160.19170 * 26 25 14 46 46 H 1.09003 * 109.59295 * 148.72451 * 27 26 25 47 47 H 1.09006 * 109.59351 * 28.28904 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 6 1.0637 -4.8198 -0.0021 12 1 0.4368 -4.7614 -0.8919 13 6 1.8377 -6.1604 -0.0026 14 7 0.9070 -7.2578 -0.1908 15 6 0.6427 -7.6761 -1.4444 16 8 1.1794 -7.1374 -2.3892 17 6 -0.3198 -8.8131 -1.6723 18 6 -0.4398 -9.0868 -3.1728 19 1 0.5477 -9.2336 -3.6104 20 6 -1.3242 -10.3289 -3.4205 21 6 -2.0611 -9.9367 -4.7221 22 6 -2.0423 -8.4240 -4.7177 23 8 -2.7471 -7.7185 -5.4080 24 7 -1.1300 -7.9757 -3.8381 25 6 0.2348 -7.9289 0.9377 26 6 -0.2247 -6.9162 1.9916 27 6 -0.7810 -5.6875 1.3011 28 8 0.2705 -4.7471 1.1250 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 2.6852 -3.7150 0.8879 32 1 2.6841 -3.7141 -0.8921 33 1 2.3545 -6.2816 0.9493 34 1 2.5660 -6.1587 -0.8136 35 1 -1.2979 -8.5468 -1.2718 36 1 0.0481 -9.7069 -1.1684 37 1 -2.0292 -10.4754 -2.6021 38 1 -0.7134 -11.2190 -3.5711 39 1 -1.5299 -10.3223 -5.5923 40 1 -3.0867 -10.3054 -4.7058 41 1 -0.9510 -7.0380 -3.6653 42 1 -0.6317 -8.4750 0.5647 43 1 0.9277 -8.6318 1.4002 44 1 0.6210 -6.6298 2.6167 45 1 -0.9995 -7.3657 2.6127 46 1 -1.5663 -5.2471 1.9156 47 1 -1.1880 -5.9671 0.3293 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201620531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:56 Heat of formation + Delta-G solvation = -127.053251 kcal Electronic energy + Delta-G solvation = -28744.722470 eV Core-core repulsion = 24733.673955 eV Total energy + Delta-G solvation = -4011.048515 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.90218 -41.08765 -39.67804 -37.63430 -36.92348 -36.23466 -34.37031 -32.69846 -32.35331 -32.11741 -30.17490 -28.01452 -26.86140 -25.97380 -24.32950 -22.86374 -22.33332 -22.19140 -21.49457 -19.98095 -19.28861 -18.51332 -18.15681 -17.75186 -17.61903 -17.41213 -16.86655 -16.52089 -16.13680 -15.85650 -15.60514 -15.17464 -15.00929 -14.83584 -14.69004 -14.58594 -14.28810 -13.91878 -13.70944 -13.64747 -13.40817 -13.31995 -13.12146 -12.79501 -12.76873 -12.59244 -12.34131 -12.28250 -12.13973 -12.00906 -11.88883 -11.82156 -11.48446 -11.00913 -10.95458 -10.82881 -10.55546 -10.13113 -9.63616 -9.04547 -7.96992 -5.27065 1.43988 1.47564 1.55667 1.56595 1.56948 1.94578 2.42481 2.53844 2.70821 3.28745 3.36371 3.50805 3.63157 3.65229 3.83459 3.87931 3.98930 4.07175 4.10426 4.22210 4.29904 4.33025 4.38679 4.44419 4.46060 4.53537 4.59094 4.69519 4.75315 4.84446 4.86818 4.88824 4.90306 5.07577 5.12896 5.13663 5.20822 5.27471 5.43913 5.52196 5.79896 6.07804 6.23322 6.31247 6.74426 7.12802 7.19898 7.29575 8.04050 8.29012 9.26896 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013700 B = 0.003045 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.330479 B = 9194.652385 C =10376.109076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.249 4.249 8 H 0.078 0.922 9 N -0.741 5.741 10 C 0.162 3.838 11 C 0.105 3.895 12 H 0.016 0.984 13 C 0.096 3.904 14 N -0.609 5.609 15 C 0.494 3.506 16 O -0.582 6.582 17 C -0.141 4.141 18 C 0.137 3.863 19 H 0.083 0.917 20 C -0.110 4.110 21 C -0.148 4.148 22 C 0.498 3.502 23 O -0.604 6.604 24 N -0.725 5.725 25 C 0.100 3.900 26 C -0.158 4.158 27 C 0.063 3.937 28 O -0.399 6.399 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.158 0.842 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.398 0.602 42 H 0.118 0.882 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.121 0.879 46 H 0.089 0.911 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 -33.015 2.713 33.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.381 4.381 8 H 0.096 0.904 9 N -0.383 5.383 10 C 0.035 3.965 11 C 0.045 3.955 12 H 0.034 0.966 13 C -0.029 4.029 14 N -0.341 5.341 15 C 0.284 3.716 16 O -0.462 6.462 17 C -0.181 4.181 18 C 0.032 3.968 19 H 0.101 0.899 20 C -0.147 4.147 21 C -0.188 4.188 22 C 0.287 3.713 23 O -0.486 6.486 24 N -0.377 5.377 25 C -0.021 4.021 26 C -0.196 4.196 27 C -0.013 4.013 28 O -0.318 6.318 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.136 0.864 36 H 0.175 0.825 37 H 0.128 0.872 38 H 0.145 0.855 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.235 0.765 42 H 0.136 0.864 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.139 0.861 46 H 0.107 0.893 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.766 -32.320 2.039 32.432 hybrid contribution 0.110 2.194 -0.373 2.228 sum -1.656 -30.126 1.665 30.217 Atomic orbital electron populations 1.69860 1.06827 1.26095 1.59383 1.25673 0.96483 1.01404 1.03516 0.85048 0.77732 0.78953 0.77458 1.21417 1.21919 1.19055 1.19690 0.91579 0.85282 1.41504 0.90405 1.42421 1.05610 1.00966 1.89294 1.20771 0.93225 0.84245 0.98302 1.21872 0.91713 0.94849 0.87042 0.96583 1.22033 0.92282 0.85009 1.03613 1.48096 1.44426 1.34050 1.07496 1.21653 0.82586 0.85242 0.82125 1.90749 1.53539 1.59419 1.42479 1.22261 0.99927 0.98436 0.97448 1.21755 0.97263 0.86445 0.91344 0.89944 1.22795 0.98677 0.96488 0.96775 1.22407 1.05311 0.89100 1.01942 1.21948 0.78001 0.93514 0.77857 1.90723 1.46221 1.65656 1.45963 1.46711 1.38719 1.10170 1.42139 1.22308 0.98935 0.94607 0.86205 1.22381 1.03251 0.95272 0.98713 1.22420 0.89033 0.90151 0.99682 1.86367 1.45826 1.56960 1.42654 0.94007 0.79535 0.94968 0.95009 0.88193 0.90244 0.86413 0.82470 0.87234 0.85510 0.86497 0.86650 0.76482 0.86442 0.88364 0.90971 0.86076 0.89270 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.16 13.06 21.65 0.28 -62.88 16 2 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 3 Si 0.98 48.47 29.55 68.60 2.03 50.50 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 5 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.25 -14.93 9.99 84.03 0.84 -14.09 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.74 -41.68 5.49 -343.43 -1.88 -43.56 16 10 C 0.16 7.17 5.95 86.38 0.51 7.69 16 11 C 0.11 3.84 2.73 31.21 0.09 3.93 16 12 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 13 C 0.10 2.53 4.87 87.25 0.42 2.96 16 14 N -0.61 -11.47 2.20 -818.70 -1.80 -13.27 16 15 C 0.49 9.90 7.46 87.66 0.65 10.55 16 16 O -0.58 -17.73 14.46 -3.03 -0.04 -17.77 16 17 C -0.14 -1.18 3.64 29.85 0.11 -1.07 16 18 C 0.14 1.58 3.00 45.44 0.14 1.72 16 19 H 0.08 1.13 7.91 -2.39 -0.02 1.11 16 20 C -0.11 -0.37 6.69 31.65 0.21 -0.16 16 21 C -0.15 -1.56 6.86 30.59 0.21 -1.35 16 22 C 0.50 11.93 8.43 87.90 0.74 12.67 16 23 O -0.60 -21.61 18.03 -3.02 -0.05 -21.66 16 24 N -0.73 -15.77 5.62 -439.45 -2.47 -18.24 16 25 C 0.10 0.93 5.96 86.26 0.51 1.44 16 26 C -0.16 -2.16 5.78 30.18 0.17 -1.98 16 27 C 0.06 1.53 6.37 71.50 0.46 1.99 16 28 O -0.40 -14.30 9.18 -117.81 -1.08 -15.38 16 29 H 0.25 15.71 8.31 -92.70 -0.77 14.94 16 30 H 0.37 22.69 7.53 -92.71 -0.70 21.99 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.10 2.30 8.11 -2.39 -0.02 2.28 16 34 H 0.08 2.34 7.27 -2.39 -0.02 2.32 16 35 H 0.12 0.70 7.40 -2.39 -0.02 0.68 16 36 H 0.16 -0.11 8.05 -2.39 -0.02 -0.13 16 37 H 0.11 -0.07 7.91 -2.38 -0.02 -0.09 16 38 H 0.13 -0.29 8.14 -2.39 -0.02 -0.31 16 39 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.40 11.13 8.12 -92.70 -0.75 10.38 16 42 H 0.12 0.31 5.88 -2.39 -0.01 0.30 16 43 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.07 1.20 8.01 -2.39 -0.02 1.19 16 45 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.04 1.03 7.39 -2.38 -0.02 1.01 16 Total: -1.00 -92.17 375.16 0.05 -92.12 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -0.46 Total: 30.19 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 5.54 Total: 19.96 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -5.87 Total: -137.95 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -1.18 Total: -54.81 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Total: -92.17 0.05 -92.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201620531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.934 kcal (2) G-P(sol) polarization free energy of solvation -92.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds