Wall clock time and date at job start Fri Apr 10 2020 18:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00518 * 2 1 4 4 H 1.48497 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47045 * 300.00375 * 3 2 1 6 6 H 1.48499 * 109.46978 * 60.00011 * 3 2 1 7 7 C 1.38815 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00316 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99675 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99815 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46841 * 179.97438 * 10 9 7 12 12 C 1.53043 * 109.45617 * 175.00140 * 11 10 9 13 13 C 1.53190 * 109.30978 * 181.38937 * 12 11 10 14 14 N 1.46926 * 108.77911 * 305.36376 * 13 12 11 15 15 C 1.34769 * 120.63226 * 233.59015 * 14 13 12 16 16 O 1.21288 * 120.00453 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00135 * 179.97438 * 15 14 13 18 18 H 1.09005 * 109.86714 * 304.55204 * 17 15 14 19 19 C 1.54099 * 110.00351 * 65.63454 * 17 15 14 20 20 C 1.54815 * 104.18723 * 121.52900 * 19 17 15 21 21 C 1.55002 * 102.09032 * 20.88011 * 20 19 17 22 22 H 1.09002 * 110.61904 * 81.47860 * 21 20 19 23 23 C 1.50697 * 110.75204 * 204.41231 * 21 20 19 24 24 N 1.34778 * 120.00366 * 292.73163 * 23 21 20 25 25 O 1.21282 * 119.99970 * 112.73042 * 23 21 20 26 26 O 1.43744 * 109.88188 * 183.54474 * 17 15 14 27 27 C 1.46927 * 118.73308 * 53.85957 * 14 13 12 28 28 C 1.53033 * 109.46491 * 295.07215 * 11 10 9 29 29 H 0.97004 * 119.99771 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00350 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46525 * 60.00365 * 10 9 7 32 32 H 1.08993 * 109.46981 * 300.00125 * 10 9 7 33 33 H 1.09005 * 109.45731 * 55.03513 * 11 10 9 34 34 H 1.08998 * 109.49947 * 61.43912 * 12 11 10 35 35 H 1.09007 * 109.49650 * 301.33745 * 12 11 10 36 36 H 1.09003 * 109.58427 * 185.57725 * 13 12 11 37 37 H 1.09001 * 109.70654 * 65.22831 * 13 12 11 38 38 H 1.08999 * 110.48774 * 240.20195 * 19 17 15 39 39 H 1.08999 * 110.48978 * 2.72098 * 19 17 15 40 40 H 1.08994 * 110.90611 * 262.68885 * 20 19 17 41 41 H 1.08995 * 110.90822 * 139.07665 * 20 19 17 42 42 H 0.97003 * 119.99588 * 359.97438 * 24 23 21 43 43 H 0.96991 * 120.00731 * 179.97438 * 24 23 21 44 44 H 1.09000 * 109.58657 * 65.93693 * 27 14 13 45 45 H 1.09010 * 109.58322 * 186.35333 * 27 14 13 46 46 H 1.09001 * 109.49666 * 298.56823 * 28 11 10 47 47 H 1.08997 * 109.49846 * 58.66209 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3461 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0635 -4.8197 0.0012 12 6 1.8247 -6.1414 -0.1246 13 6 0.8242 -7.3010 -0.1585 14 7 -0.0415 -7.2135 1.0254 15 6 -0.1831 -8.2685 1.8520 16 8 0.4067 -9.3030 1.6216 17 6 -1.0744 -8.1629 3.0626 18 1 -0.7664 -7.3166 3.6767 19 6 -2.5409 -7.9857 2.6238 20 6 -3.2769 -9.1866 3.2663 21 6 -2.3080 -9.5886 4.4073 22 1 -2.4524 -8.9478 5.2772 23 6 -2.4939 -11.0368 4.7804 24 7 -3.6402 -11.4408 5.3630 25 8 -1.6121 -11.8387 4.5565 26 8 -1.0016 -9.3759 3.8305 27 6 -0.7546 -5.9559 1.2876 28 6 0.2679 -4.8096 1.3084 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 2.6844 -3.7146 0.8906 32 1 2.6845 -3.7146 -0.8894 33 1 0.3795 -4.7131 -0.8409 34 1 2.4907 -6.2605 0.7301 35 1 2.4095 -6.1384 -1.0445 36 1 1.3627 -8.2486 -0.1482 37 1 0.2166 -7.2359 -1.0611 38 1 -2.9416 -7.0456 3.0028 39 1 -2.6212 -8.0233 1.5374 40 1 -3.3931 -10.0000 2.5501 41 1 -4.2437 -8.8814 3.6665 42 1 -4.3453 -10.7993 5.5424 43 1 -3.7601 -12.3730 5.6028 44 1 -1.4881 -5.7808 0.5006 45 1 -1.2582 -6.0158 2.2526 46 1 0.9485 -4.9411 2.1496 47 1 -0.2554 -3.8587 1.4085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206261311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:26 Heat of formation + Delta-G solvation = -107.285056 kcal Electronic energy + Delta-G solvation = -28177.283668 eV Core-core repulsion = 24167.092367 eV Total energy + Delta-G solvation = -4010.191301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.07051 -39.90528 -38.51953 -37.40952 -34.99658 -34.20770 -33.17382 -32.37087 -31.43646 -30.35458 -29.95346 -26.83789 -25.15306 -23.69646 -23.25226 -22.48924 -21.56703 -20.96964 -20.29604 -19.23457 -18.11894 -17.74193 -17.18711 -16.92234 -16.68886 -16.13074 -15.49395 -14.99496 -14.91409 -14.72019 -14.59528 -14.24395 -13.96995 -13.94348 -13.72680 -13.58828 -13.27398 -12.81861 -12.54870 -12.41289 -12.27610 -12.16916 -12.03441 -11.79663 -11.45136 -11.16562 -11.01822 -10.87517 -10.66060 -10.42382 -10.34317 -10.29036 -10.13499 -10.11396 -9.98720 -9.67411 -9.52910 -8.90045 -8.64526 -6.93843 -5.79959 -3.07624 2.18755 2.41857 2.56069 2.96950 3.41141 3.47479 3.49248 3.64352 3.91198 4.19362 4.29997 4.37939 4.53247 4.56748 4.67874 4.75677 4.90237 5.02260 5.03632 5.09329 5.15958 5.18050 5.33652 5.37452 5.43205 5.49705 5.53307 5.61435 5.79079 5.92394 5.94758 6.05617 6.15812 6.18341 6.25989 6.36105 6.44039 6.46742 6.61056 6.78937 6.86214 6.90380 7.31775 7.68871 7.85300 8.11460 8.39717 9.51084 10.08985 10.43821 11.43173 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.024292 B = 0.002299 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.377680 B =12174.414084 C =12874.910543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.157 3.843 11 C -0.093 4.093 12 C -0.126 4.126 13 C 0.114 3.886 14 N -0.606 5.606 15 C 0.514 3.486 16 O -0.521 6.521 17 C 0.058 3.942 18 H 0.101 0.899 19 C -0.145 4.145 20 C -0.141 4.141 21 C 0.054 3.946 22 H 0.102 0.898 23 C 0.522 3.478 24 N -0.853 5.853 25 O -0.513 6.513 26 O -0.317 6.317 27 C 0.102 3.898 28 C -0.126 4.126 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.401 0.599 43 H 0.406 0.594 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.304 -18.888 8.589 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.112 4.112 12 C -0.165 4.165 13 C -0.008 4.008 14 N -0.342 5.342 15 C 0.300 3.700 16 O -0.396 6.396 17 C -0.003 4.003 18 H 0.119 0.881 19 C -0.183 4.183 20 C -0.179 4.179 21 C -0.008 4.008 22 H 0.119 0.881 23 C 0.305 3.695 24 N -0.420 5.420 25 O -0.386 6.386 26 O -0.234 6.234 27 C -0.020 4.020 28 C -0.164 4.164 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.230 0.770 43 H 0.237 0.763 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.924 -19.856 8.258 24.121 hybrid contribution -0.451 1.269 0.208 1.363 sum -11.375 -18.588 8.466 23.379 Atomic orbital electron populations 1.69657 1.05075 1.25489 1.58166 1.24722 0.95545 0.97661 1.03177 0.86123 0.78832 0.84135 0.77166 1.20583 1.21899 1.21894 1.19290 0.91094 0.84218 1.42177 0.91198 1.42381 1.05793 0.99998 1.89460 1.20678 0.93187 0.85337 0.97817 1.21301 0.97860 0.94453 0.97620 1.21918 0.97754 0.93987 1.02818 1.21630 0.92450 1.00201 0.86489 1.48094 1.47064 1.12768 1.26267 1.20291 0.82350 0.83558 0.83765 1.90737 1.46819 1.28831 1.73214 1.22722 0.95668 0.89463 0.92480 0.88111 1.23017 0.92541 0.99628 1.03152 1.23118 0.98706 0.98885 0.97209 1.23049 0.85472 0.94201 0.98036 0.88069 1.20153 0.82217 0.89945 0.77200 1.43715 1.18615 1.14323 1.65310 1.90829 1.41274 1.54810 1.51695 1.89158 1.27343 1.41481 1.65384 1.22076 0.95002 0.83307 1.01630 1.22015 0.97942 0.98077 0.98381 0.93617 0.78305 0.96381 0.96316 0.90944 0.91511 0.90565 0.89213 0.91416 0.88584 0.89244 0.89633 0.88701 0.77033 0.76282 0.90813 0.90120 0.91657 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -17.79 5.32 -59.90 -0.32 -18.11 16 10 C 0.16 3.04 5.65 -4.04 -0.02 3.02 16 11 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 12 C -0.13 -1.62 5.36 -26.61 -0.14 -1.76 16 13 C 0.11 1.41 6.43 -3.71 -0.02 1.38 16 14 N -0.61 -7.40 2.97 -172.50 -0.51 -7.91 16 15 C 0.51 7.21 6.89 -10.99 -0.08 7.13 16 16 O -0.52 -9.69 15.94 -14.02 -0.22 -9.91 16 17 C 0.06 0.62 2.94 -27.31 -0.08 0.54 16 18 H 0.10 0.90 7.48 -51.93 -0.39 0.51 16 19 C -0.15 -1.00 5.10 -25.20 -0.13 -1.13 16 20 C -0.14 -0.83 6.58 -24.72 -0.16 -0.99 16 21 C 0.05 0.45 3.76 -26.83 -0.10 0.35 16 22 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 23 C 0.52 5.12 7.48 -10.99 -0.08 5.03 16 24 N -0.85 -3.79 8.87 31.22 0.28 -3.51 16 25 O -0.51 -8.10 17.40 -13.51 -0.24 -8.34 16 26 O -0.32 -4.26 10.02 -64.30 -0.64 -4.91 16 27 C 0.10 1.07 5.68 -3.49 -0.02 1.05 16 28 C -0.13 -1.71 5.26 -26.39 -0.14 -1.85 16 29 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.38 9.59 6.84 -40.82 -0.28 9.31 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.41 7.73 -51.93 -0.40 0.01 16 39 H 0.09 0.67 7.55 -51.93 -0.39 0.27 16 40 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 41 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.40 0.34 8.83 -40.82 -0.36 -0.02 16 43 H 0.41 1.50 8.93 -40.82 -0.36 1.14 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.65 4.85 -51.92 -0.25 0.40 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.09 1.38 7.15 -51.93 -0.37 1.01 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -38.76 375.23 -9.09 -47.85 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.36 Total: 4.82 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.42 Total: 4.01 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.17 Total: -56.27 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -1.10 Total: -23.16 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.76 -9.09 -47.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206261311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.433 kcal (2) G-P(sol) polarization free energy of solvation -38.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds