Wall clock time and date at job start Fri Apr 10 2020 18:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00518 * 2 1 4 4 H 1.48497 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47045 * 300.00375 * 3 2 1 6 6 H 1.48499 * 109.46978 * 60.00011 * 3 2 1 7 7 C 1.38815 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00316 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99675 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99815 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46841 * 179.97438 * 10 9 7 12 12 C 1.53043 * 109.45617 * 175.00140 * 11 10 9 13 13 C 1.53190 * 109.30978 * 181.38937 * 12 11 10 14 14 N 1.46926 * 108.77911 * 305.36376 * 13 12 11 15 15 C 1.34769 * 120.63226 * 233.59015 * 14 13 12 16 16 O 1.21288 * 120.00453 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00135 * 179.97438 * 15 14 13 18 18 H 1.09005 * 109.86714 * 304.55204 * 17 15 14 19 19 C 1.54099 * 110.00351 * 65.63454 * 17 15 14 20 20 C 1.54815 * 104.18723 * 121.52900 * 19 17 15 21 21 C 1.55002 * 102.09032 * 20.88011 * 20 19 17 22 22 H 1.09002 * 110.61904 * 81.47860 * 21 20 19 23 23 C 1.50697 * 110.75204 * 204.41231 * 21 20 19 24 24 N 1.34778 * 120.00366 * 292.73163 * 23 21 20 25 25 O 1.21282 * 119.99970 * 112.73042 * 23 21 20 26 26 O 1.43744 * 109.88188 * 183.54474 * 17 15 14 27 27 C 1.46927 * 118.73308 * 53.85957 * 14 13 12 28 28 C 1.53033 * 109.46491 * 295.07215 * 11 10 9 29 29 H 0.97004 * 119.99771 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00350 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46525 * 60.00365 * 10 9 7 32 32 H 1.08993 * 109.46981 * 300.00125 * 10 9 7 33 33 H 1.09005 * 109.45731 * 55.03513 * 11 10 9 34 34 H 1.08998 * 109.49947 * 61.43912 * 12 11 10 35 35 H 1.09007 * 109.49650 * 301.33745 * 12 11 10 36 36 H 1.09003 * 109.58427 * 185.57725 * 13 12 11 37 37 H 1.09001 * 109.70654 * 65.22831 * 13 12 11 38 38 H 1.08999 * 110.48774 * 240.20195 * 19 17 15 39 39 H 1.08999 * 110.48978 * 2.72098 * 19 17 15 40 40 H 1.08994 * 110.90611 * 262.68885 * 20 19 17 41 41 H 1.08995 * 110.90822 * 139.07665 * 20 19 17 42 42 H 0.97003 * 119.99588 * 359.97438 * 24 23 21 43 43 H 0.96991 * 120.00731 * 179.97438 * 24 23 21 44 44 H 1.09000 * 109.58657 * 65.93693 * 27 14 13 45 45 H 1.09010 * 109.58322 * 186.35333 * 27 14 13 46 46 H 1.09001 * 109.49666 * 298.56823 * 28 11 10 47 47 H 1.08997 * 109.49846 * 58.66209 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3461 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0635 -4.8197 0.0012 12 6 1.8247 -6.1414 -0.1246 13 6 0.8242 -7.3010 -0.1585 14 7 -0.0415 -7.2135 1.0254 15 6 -0.1831 -8.2685 1.8520 16 8 0.4067 -9.3030 1.6216 17 6 -1.0744 -8.1629 3.0626 18 1 -0.7664 -7.3166 3.6767 19 6 -2.5409 -7.9857 2.6238 20 6 -3.2769 -9.1866 3.2663 21 6 -2.3080 -9.5886 4.4073 22 1 -2.4524 -8.9478 5.2772 23 6 -2.4939 -11.0368 4.7804 24 7 -3.6402 -11.4408 5.3630 25 8 -1.6121 -11.8387 4.5565 26 8 -1.0016 -9.3759 3.8305 27 6 -0.7546 -5.9559 1.2876 28 6 0.2679 -4.8096 1.3084 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 2.6844 -3.7146 0.8906 32 1 2.6845 -3.7146 -0.8894 33 1 0.3795 -4.7131 -0.8409 34 1 2.4907 -6.2605 0.7301 35 1 2.4095 -6.1384 -1.0445 36 1 1.3627 -8.2486 -0.1482 37 1 0.2166 -7.2359 -1.0611 38 1 -2.9416 -7.0456 3.0028 39 1 -2.6212 -8.0233 1.5374 40 1 -3.3931 -10.0000 2.5501 41 1 -4.2437 -8.8814 3.6665 42 1 -4.3453 -10.7993 5.5424 43 1 -3.7601 -12.3730 5.6028 44 1 -1.4881 -5.7808 0.5006 45 1 -1.2582 -6.0158 2.2526 46 1 0.9485 -4.9411 2.1496 47 1 -0.2554 -3.8587 1.4085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206261311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:24 Heat of formation + Delta-G solvation = -137.530585 kcal Electronic energy + Delta-G solvation = -28178.595213 eV Core-core repulsion = 24167.092367 eV Total energy + Delta-G solvation = -4011.502846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.90470 -40.79148 -39.41512 -38.55563 -36.57256 -34.87293 -34.61941 -33.27560 -32.49315 -31.89785 -30.78802 -28.23639 -26.20221 -25.13855 -24.34078 -23.39910 -22.70268 -21.60905 -21.46687 -20.24696 -19.17998 -18.74868 -18.38226 -17.82102 -17.46975 -17.04373 -16.69209 -16.37078 -15.81009 -15.68903 -15.49570 -15.47245 -15.35333 -15.25503 -14.72502 -14.61724 -14.46092 -14.03364 -13.92471 -13.55865 -13.21098 -13.11148 -12.94960 -12.78382 -12.73592 -12.63295 -12.19945 -12.10603 -11.96943 -11.95010 -11.66343 -11.49910 -11.38759 -11.31154 -10.92734 -10.91332 -10.72449 -10.48775 -9.69913 -8.95705 -7.93620 -5.20704 1.44834 1.48760 1.49430 1.52183 1.59005 1.70055 2.25470 2.57448 2.99491 3.27201 3.40050 3.53181 3.71458 3.76138 3.82683 3.85861 3.92785 4.03249 4.10056 4.12130 4.29288 4.31187 4.41401 4.47705 4.57929 4.60017 4.74060 4.78911 4.82630 4.85410 4.92211 4.97650 5.02716 5.05781 5.08338 5.18981 5.29329 5.48993 5.52454 5.56177 5.65186 5.87780 6.30027 6.33433 6.43739 7.09327 7.30969 7.37083 8.12669 8.38181 9.29763 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.024292 B = 0.002299 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.377680 B =12174.414084 C =12874.910543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.740 5.740 10 C 0.156 3.844 11 C -0.083 4.083 12 C -0.116 4.116 13 C 0.115 3.885 14 N -0.601 5.601 15 C 0.506 3.494 16 O -0.580 6.580 17 C 0.055 3.945 18 H 0.122 0.878 19 C -0.141 4.141 20 C -0.132 4.132 21 C 0.047 3.953 22 H 0.141 0.859 23 C 0.516 3.484 24 N -0.824 5.824 25 O -0.589 6.589 26 O -0.367 6.367 27 C 0.109 3.891 28 C -0.122 4.122 29 H 0.252 0.748 30 H 0.378 0.622 31 H 0.012 0.988 32 H 0.016 0.984 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.143 0.857 42 H 0.423 0.577 43 H 0.411 0.589 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.057 0.943 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.457 -17.980 9.425 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.383 5.383 10 C 0.030 3.970 11 C -0.102 4.102 12 C -0.154 4.154 13 C -0.008 4.008 14 N -0.335 5.335 15 C 0.295 3.705 16 O -0.459 6.459 17 C -0.006 4.006 18 H 0.140 0.860 19 C -0.179 4.179 20 C -0.169 4.169 21 C -0.014 4.014 22 H 0.158 0.842 23 C 0.300 3.700 24 N -0.390 5.390 25 O -0.468 6.468 26 O -0.285 6.285 27 C -0.013 4.013 28 C -0.160 4.160 29 H 0.061 0.939 30 H 0.211 0.789 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.154 0.846 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.161 0.839 42 H 0.255 0.745 43 H 0.243 0.757 44 H 0.110 0.890 45 H 0.130 0.870 46 H 0.076 0.924 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.135 -18.926 9.117 24.775 hybrid contribution 0.230 0.953 -0.035 0.981 sum -12.905 -17.973 9.081 23.917 Atomic orbital electron populations 1.69782 1.06268 1.25958 1.59495 1.25466 0.96438 1.00711 1.03792 0.85146 0.78117 0.80198 0.76733 1.19587 1.22040 1.21884 1.19624 0.91354 0.85598 1.41109 0.91273 1.42522 1.05723 1.00823 1.89253 1.20809 0.93955 0.85157 0.97110 1.21184 0.97067 0.93361 0.98604 1.21811 0.97622 0.93048 1.02947 1.21601 0.92654 0.99021 0.87490 1.48170 1.46604 1.13029 1.25719 1.21090 0.82026 0.82852 0.84570 1.90705 1.49322 1.31096 1.74761 1.22924 0.97333 0.89307 0.91005 0.86040 1.23127 0.89856 1.01820 1.03053 1.23167 1.00101 0.97842 0.95838 1.23439 0.84267 0.93602 1.00044 0.84218 1.20655 0.82379 0.90375 0.76604 1.43498 1.17471 1.15225 1.62814 1.90797 1.44063 1.56703 1.55226 1.89120 1.30481 1.42762 1.66153 1.22182 0.94057 0.80879 1.04172 1.21920 0.98276 0.98645 0.97145 0.93935 0.78913 0.96975 0.96644 0.90793 0.92475 0.89601 0.90651 0.89660 0.84645 0.89838 0.91651 0.83887 0.74452 0.75670 0.88984 0.86979 0.92437 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.58 13.06 21.65 0.28 -56.30 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.74 -35.91 5.32 -343.44 -1.83 -37.73 16 10 C 0.16 6.01 5.65 86.38 0.49 6.50 16 11 C -0.08 -2.40 2.19 -10.77 -0.02 -2.42 16 12 C -0.12 -2.90 5.36 30.67 0.16 -2.73 16 13 C 0.11 2.75 6.43 86.36 0.56 3.30 16 14 N -0.60 -13.91 2.97 -818.06 -2.43 -16.33 16 15 C 0.51 14.04 6.89 87.66 0.60 14.65 16 16 O -0.58 -22.50 15.94 15.65 0.25 -22.25 16 17 C 0.06 1.08 2.94 30.22 0.09 1.17 16 18 H 0.12 1.80 7.48 -2.38 -0.02 1.78 16 19 C -0.14 -1.41 5.10 31.59 0.16 -1.25 16 20 C -0.13 -1.10 6.58 31.90 0.21 -0.89 16 21 C 0.05 0.68 3.76 30.53 0.11 0.80 16 22 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 23 C 0.52 9.79 7.48 87.66 0.66 10.44 16 24 N -0.82 -5.63 8.87 -173.53 -1.54 -7.17 16 25 O -0.59 -19.57 17.40 15.20 0.26 -19.30 16 26 O -0.37 -9.79 10.02 -121.19 -1.21 -11.00 16 27 C 0.11 1.97 5.68 86.51 0.49 2.46 16 28 C -0.12 -3.13 5.26 30.81 0.16 -2.96 16 29 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.38 18.93 6.84 -92.71 -0.63 18.29 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.08 2.07 7.01 -2.39 -0.02 2.06 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.14 0.32 7.73 -2.39 -0.02 0.30 16 39 H 0.08 0.98 7.55 -2.39 -0.02 0.96 16 40 H 0.06 0.83 8.05 -2.39 -0.02 0.81 16 41 H 0.14 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.42 -0.82 8.83 -92.71 -0.82 -1.63 16 43 H 0.41 2.44 8.93 -92.72 -0.83 1.61 16 44 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.11 1.36 4.85 -2.38 -0.01 1.35 16 46 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.07 2.16 7.15 -2.39 -0.02 2.14 16 Total: -1.00 -89.68 375.23 -0.47 -90.15 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -1.27 Total: 19.72 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 4.98 Total: 12.95 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -5.51 Total: -117.53 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -0.70 Total: -52.55 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -89.68 -0.47 -90.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206261311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.380 kcal (2) G-P(sol) polarization free energy of solvation -89.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds