Wall clock time and date at job start Fri Apr 10 2020 18:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00185 * 2 1 4 4 H 1.48504 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47067 * 299.99900 * 3 2 1 6 6 H 1.48496 * 109.47224 * 60.00122 * 3 2 1 7 7 C 1.38951 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00201 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99732 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99729 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00544 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99755 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46929 * 180.02562 * 12 10 9 14 14 C 1.46902 * 111.00188 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.52358 * 35.07787 * 14 13 12 16 16 C 1.53046 * 109.49275 * 274.99857 * 14 13 12 17 17 C 1.53046 * 109.53579 * 178.67882 * 16 14 13 18 18 C 1.53193 * 109.31028 * 61.36644 * 17 16 14 19 19 N 1.46927 * 108.77663 * 305.36644 * 18 17 16 20 20 C 1.34778 * 120.62805 * 233.63128 * 19 18 17 21 21 O 1.21285 * 120.00278 * 179.97438 * 20 19 18 22 22 C 1.50698 * 120.00102 * 359.97438 * 20 19 18 23 23 H 1.08997 * 109.82516 * 55.56336 * 22 20 19 24 24 C 1.54384 * 109.82777 * 294.58477 * 22 20 19 25 25 C 1.55308 * 102.25406 * 219.12960 * 24 22 20 26 26 C 1.54947 * 100.93913 * 34.13271 * 25 24 22 27 27 O 1.43244 * 109.83243 * 176.45607 * 22 20 19 28 28 C 1.46919 * 118.74179 * 53.60344 * 19 18 17 29 29 H 0.97004 * 119.99950 * 0.02562 * 1 2 3 30 30 H 0.96992 * 120.00231 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47012 * 60.00508 * 12 10 9 32 32 H 1.08999 * 109.47150 * 299.99912 * 12 10 9 33 33 H 1.00904 * 111.00202 * 303.95131 * 13 12 10 34 34 H 1.08993 * 109.45866 * 298.70057 * 16 14 13 35 35 H 1.09000 * 109.45949 * 58.66393 * 16 14 13 36 36 H 1.09001 * 109.49347 * 181.31682 * 17 16 14 37 37 H 1.08998 * 109.49687 * 301.41384 * 17 16 14 38 38 H 1.09000 * 109.58615 * 185.57833 * 18 17 16 39 39 H 1.08997 * 109.70596 * 65.21979 * 18 17 16 40 40 H 1.09001 * 110.84879 * 337.32238 * 24 22 20 41 41 H 1.09008 * 110.84483 * 100.94136 * 24 22 20 42 42 H 1.09001 * 111.12464 * 276.21446 * 25 24 22 43 43 H 1.09002 * 111.12720 * 152.05272 * 25 24 22 44 44 H 1.08999 * 110.30868 * 204.63910 * 26 25 24 45 45 H 1.08997 * 110.30546 * 82.47130 * 26 25 24 46 46 H 1.09002 * 109.59216 * 186.60571 * 28 19 18 47 47 H 1.09004 * 109.70105 * 66.25262 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3906 -0.0016 10 6 1.9971 -3.5578 -0.0016 11 8 3.2100 -3.5580 -0.0011 12 6 1.2435 -4.8630 -0.0022 13 7 2.1981 -5.9795 -0.0014 14 6 1.4978 -7.2709 -0.0026 15 1 0.5857 -7.1901 -0.5940 16 6 1.1422 -7.6603 1.4341 17 6 0.3836 -8.9895 1.4313 18 6 1.2799 -10.0830 0.8416 19 7 1.7443 -9.6504 -0.4835 20 6 1.5656 -10.4360 -1.5640 21 8 1.9530 -10.0674 -2.6525 22 6 0.8843 -11.7724 -1.4195 23 1 -0.0941 -11.6406 -0.9577 24 6 1.7518 -12.7116 -0.5541 25 6 1.5796 -14.0766 -1.2746 26 6 1.4695 -13.6181 -2.7506 27 8 0.7360 -12.3839 -2.7064 28 6 2.4066 -8.3449 -0.6085 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 -0.0024 31 1 0.6173 -4.9205 -0.8924 32 1 0.6165 -4.9209 0.8875 33 1 2.8336 -5.9125 -0.7824 34 1 2.0562 -7.7650 2.0187 35 1 0.5156 -6.8855 1.8759 36 1 0.1103 -9.2545 2.4527 37 1 -0.5179 -8.8925 0.8264 38 1 0.7121 -11.0085 0.7456 39 1 2.1377 -10.2466 1.4939 40 1 2.7951 -12.3959 -0.5652 41 1 1.3711 -12.7607 0.4662 42 1 0.6685 -14.5796 -0.9505 43 1 2.4519 -14.7127 -1.1248 44 1 0.9274 -14.3595 -3.3376 45 1 2.4618 -13.4536 -3.1706 46 1 2.5823 -8.1235 -1.6612 47 1 3.3571 -8.3626 -0.0752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207160616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:30 Heat of formation + Delta-G solvation = -111.867916 kcal Electronic energy + Delta-G solvation = -27823.735592 eV Core-core repulsion = 23813.345563 eV Total energy + Delta-G solvation = -4010.390029 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.99309 -39.28041 -38.27786 -37.44981 -35.21702 -33.86397 -32.78929 -32.29454 -31.26866 -30.88762 -29.38590 -26.35638 -25.88477 -24.17300 -23.28719 -22.76330 -22.20623 -20.52025 -19.49330 -19.10691 -18.07776 -17.87860 -16.98342 -16.32011 -16.19875 -16.06903 -15.34060 -15.19852 -14.94652 -14.61926 -14.46749 -14.15432 -13.97859 -13.83485 -13.72190 -13.59844 -13.31190 -13.02069 -12.64335 -12.40763 -12.26603 -12.11015 -11.90706 -11.75260 -11.52578 -11.51193 -11.44345 -11.09642 -11.07412 -10.86965 -10.76149 -10.57101 -10.33299 -10.21477 -9.55560 -9.51037 -8.89615 -8.45506 -8.09855 -7.95140 -6.40755 -3.81469 2.31380 2.53990 3.17355 3.27817 3.35287 3.42135 3.85830 3.91712 4.04717 4.08713 4.23003 4.30110 4.52464 4.58341 4.63042 4.65319 4.73874 4.84050 4.89840 5.03898 5.10382 5.18004 5.22335 5.23051 5.25757 5.26527 5.33042 5.40040 5.51659 5.55261 5.64477 5.71429 5.78923 5.85937 5.96600 6.04038 6.14038 6.21838 6.32436 6.47331 7.09891 7.20869 7.56538 7.62150 7.93733 8.07553 8.62203 9.18983 9.55337 10.06666 10.77084 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.032609 B = 0.002039 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.440796 B =13726.550882 C =14009.273028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.661 5.661 14 C 0.075 3.925 15 H 0.046 0.954 16 C -0.110 4.110 17 C -0.136 4.136 18 C 0.103 3.897 19 N -0.607 5.607 20 C 0.501 3.499 21 O -0.522 6.522 22 C 0.067 3.933 23 H 0.107 0.893 24 C -0.147 4.147 25 C -0.155 4.155 26 C 0.047 3.953 27 O -0.352 6.352 28 C 0.111 3.889 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.351 0.649 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.063 0.937 46 H 0.091 0.909 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -29.108 2.881 29.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.081 4.081 13 N -0.294 5.294 14 C -0.036 4.036 15 H 0.064 0.936 16 C -0.148 4.148 17 C -0.175 4.175 18 C -0.020 4.020 19 N -0.343 5.343 20 C 0.288 3.712 21 O -0.397 6.397 22 C 0.006 3.994 23 H 0.124 0.876 24 C -0.185 4.185 25 C -0.193 4.193 26 C -0.030 4.030 27 O -0.270 6.270 28 C -0.012 4.012 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.171 0.829 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.110 0.890 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.510 -28.651 2.761 28.823 hybrid contribution -0.562 0.882 -0.613 1.212 sum -2.072 -27.769 2.148 27.929 Atomic orbital electron populations 1.69621 1.05941 1.28041 1.50725 1.25271 0.95651 0.99752 0.97371 0.85793 0.79719 0.81109 0.77681 1.19205 1.20780 1.20753 1.19759 0.93406 0.82206 1.47407 0.87845 1.41868 1.09204 1.04614 1.64391 1.19789 0.88379 0.84692 0.84464 1.90525 1.13732 1.87057 1.55353 1.21715 0.94315 0.90843 1.01193 1.60115 1.18661 0.99322 1.51300 1.21839 0.95913 0.89394 0.96493 0.93618 1.21550 1.00840 0.95937 0.96460 1.21962 0.98704 0.95371 1.01462 1.21937 0.98601 0.97813 0.83667 1.48038 1.59462 1.18848 1.07923 1.21007 0.79682 0.86493 0.84027 1.90728 1.49497 1.73624 1.25825 1.22635 0.99741 0.91184 0.85887 0.87580 1.23221 1.01166 0.94248 0.99857 1.23294 1.03598 0.97102 0.95272 1.23492 0.97149 0.85767 0.96563 1.88542 1.70852 1.36214 1.31358 1.21734 0.95457 0.81091 1.02906 0.91935 0.77471 0.93803 0.89594 0.82858 0.90784 0.91259 0.90216 0.91463 0.89852 0.90735 0.89777 0.88717 0.89846 0.89373 0.89092 0.91825 0.89022 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 10 C 0.44 10.56 7.82 -10.98 -0.09 10.47 16 11 O -0.58 -16.00 15.78 5.55 0.09 -15.91 16 12 C 0.05 0.93 5.97 -4.97 -0.03 0.90 16 13 N -0.66 -10.71 5.93 -107.86 -0.64 -11.35 16 14 C 0.07 0.94 2.64 -67.59 -0.18 0.76 16 15 H 0.05 0.61 7.80 -51.93 -0.41 0.21 16 16 C -0.11 -1.15 5.40 -26.68 -0.14 -1.30 16 17 C -0.14 -1.00 6.08 -26.61 -0.16 -1.16 16 18 C 0.10 0.68 5.72 -3.71 -0.02 0.66 16 19 N -0.61 -6.20 2.97 -172.77 -0.51 -6.71 16 20 C 0.50 6.11 6.97 -10.99 -0.08 6.03 16 21 O -0.52 -8.87 15.94 -14.10 -0.22 -9.10 16 22 C 0.07 0.59 3.06 -27.16 -0.08 0.51 16 23 H 0.11 0.73 7.47 -51.93 -0.39 0.34 16 24 C -0.15 -0.79 5.39 -24.78 -0.13 -0.93 16 25 C -0.16 -0.71 7.16 -24.48 -0.18 -0.88 16 26 C 0.05 0.34 7.78 38.18 0.30 0.64 16 27 O -0.35 -3.95 10.56 -54.88 -0.58 -4.53 16 28 C 0.11 1.34 5.70 -3.72 -0.02 1.31 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 31 H 0.04 0.73 8.06 -51.93 -0.42 0.32 16 32 H 0.09 1.41 7.42 -51.93 -0.39 1.03 16 33 H 0.35 6.00 8.06 -39.29 -0.32 5.68 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.78 7.43 -51.93 -0.39 0.40 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.36 4.48 -51.93 -0.23 0.12 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.52 7.84 -51.93 -0.41 0.12 16 41 H 0.09 0.27 6.97 -51.92 -0.36 -0.09 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 1.29 7.01 -51.93 -0.36 0.92 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -35.42 374.42 -8.94 -44.36 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -7.30 Total: 11.02 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -1.05 Total: 8.93 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.49 Total: -56.67 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.72 Total: -29.54 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.42 -8.94 -44.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207160616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.503 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds