Wall clock time and date at job start Fri Apr 10 2020 18:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00185 * 2 1 4 4 H 1.48504 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47067 * 299.99900 * 3 2 1 6 6 H 1.48496 * 109.47224 * 60.00122 * 3 2 1 7 7 C 1.38951 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00201 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99732 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99729 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00544 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99755 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46929 * 180.02562 * 12 10 9 14 14 C 1.46902 * 111.00188 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.52358 * 35.07787 * 14 13 12 16 16 C 1.53046 * 109.49275 * 274.99857 * 14 13 12 17 17 C 1.53046 * 109.53579 * 178.67882 * 16 14 13 18 18 C 1.53193 * 109.31028 * 61.36644 * 17 16 14 19 19 N 1.46927 * 108.77663 * 305.36644 * 18 17 16 20 20 C 1.34778 * 120.62805 * 233.63128 * 19 18 17 21 21 O 1.21285 * 120.00278 * 179.97438 * 20 19 18 22 22 C 1.50698 * 120.00102 * 359.97438 * 20 19 18 23 23 H 1.08997 * 109.82516 * 55.56336 * 22 20 19 24 24 C 1.54384 * 109.82777 * 294.58477 * 22 20 19 25 25 C 1.55308 * 102.25406 * 219.12960 * 24 22 20 26 26 C 1.54947 * 100.93913 * 34.13271 * 25 24 22 27 27 O 1.43244 * 109.83243 * 176.45607 * 22 20 19 28 28 C 1.46919 * 118.74179 * 53.60344 * 19 18 17 29 29 H 0.97004 * 119.99950 * 0.02562 * 1 2 3 30 30 H 0.96992 * 120.00231 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.47012 * 60.00508 * 12 10 9 32 32 H 1.08999 * 109.47150 * 299.99912 * 12 10 9 33 33 H 1.00904 * 111.00202 * 303.95131 * 13 12 10 34 34 H 1.08993 * 109.45866 * 298.70057 * 16 14 13 35 35 H 1.09000 * 109.45949 * 58.66393 * 16 14 13 36 36 H 1.09001 * 109.49347 * 181.31682 * 17 16 14 37 37 H 1.08998 * 109.49687 * 301.41384 * 17 16 14 38 38 H 1.09000 * 109.58615 * 185.57833 * 18 17 16 39 39 H 1.08997 * 109.70596 * 65.21979 * 18 17 16 40 40 H 1.09001 * 110.84879 * 337.32238 * 24 22 20 41 41 H 1.09008 * 110.84483 * 100.94136 * 24 22 20 42 42 H 1.09001 * 111.12464 * 276.21446 * 25 24 22 43 43 H 1.09002 * 111.12720 * 152.05272 * 25 24 22 44 44 H 1.08999 * 110.30868 * 204.63910 * 26 25 24 45 45 H 1.08997 * 110.30546 * 82.47130 * 26 25 24 46 46 H 1.09002 * 109.59216 * 186.60571 * 28 19 18 47 47 H 1.09004 * 109.70105 * 66.25262 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3906 -0.0016 10 6 1.9971 -3.5578 -0.0016 11 8 3.2100 -3.5580 -0.0011 12 6 1.2435 -4.8630 -0.0022 13 7 2.1981 -5.9795 -0.0014 14 6 1.4978 -7.2709 -0.0026 15 1 0.5857 -7.1901 -0.5940 16 6 1.1422 -7.6603 1.4341 17 6 0.3836 -8.9895 1.4313 18 6 1.2799 -10.0830 0.8416 19 7 1.7443 -9.6504 -0.4835 20 6 1.5656 -10.4360 -1.5640 21 8 1.9530 -10.0674 -2.6525 22 6 0.8843 -11.7724 -1.4195 23 1 -0.0941 -11.6406 -0.9577 24 6 1.7518 -12.7116 -0.5541 25 6 1.5796 -14.0766 -1.2746 26 6 1.4695 -13.6181 -2.7506 27 8 0.7360 -12.3839 -2.7064 28 6 2.4066 -8.3449 -0.6085 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 -0.0024 31 1 0.6173 -4.9205 -0.8924 32 1 0.6165 -4.9209 0.8875 33 1 2.8336 -5.9125 -0.7824 34 1 2.0562 -7.7650 2.0187 35 1 0.5156 -6.8855 1.8759 36 1 0.1103 -9.2545 2.4527 37 1 -0.5179 -8.8925 0.8264 38 1 0.7121 -11.0085 0.7456 39 1 2.1377 -10.2466 1.4939 40 1 2.7951 -12.3959 -0.5652 41 1 1.3711 -12.7607 0.4662 42 1 0.6685 -14.5796 -0.9505 43 1 2.4519 -14.7127 -1.1248 44 1 0.9274 -14.3595 -3.3376 45 1 2.4618 -13.4536 -3.1706 46 1 2.5823 -8.1235 -1.6612 47 1 3.3571 -8.3626 -0.0752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207160616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:29 Heat of formation + Delta-G solvation = -139.036132 kcal Electronic energy + Delta-G solvation = -27824.913694 eV Core-core repulsion = 23813.345563 eV Total energy + Delta-G solvation = -4011.568131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.78342 -40.34397 -39.79075 -38.53104 -36.46853 -35.81987 -33.55126 -33.27539 -32.99620 -31.78819 -30.26586 -27.90865 -26.76257 -25.81346 -24.04851 -23.58930 -22.66952 -21.43624 -21.17124 -20.14892 -19.89331 -18.77078 -18.04822 -17.50004 -17.09710 -16.93191 -16.78704 -16.48887 -16.13738 -15.98092 -15.56409 -15.32714 -15.31496 -14.96885 -14.70984 -14.33053 -14.19883 -14.05646 -13.78919 -13.60698 -13.46014 -13.33143 -12.97089 -12.90790 -12.73604 -12.43050 -12.40090 -12.22879 -12.12480 -11.94943 -11.84609 -11.71996 -11.62862 -11.53617 -11.28666 -10.40133 -10.36494 -10.04470 -9.78253 -9.43987 -8.49006 -5.98012 1.35248 1.40581 1.44152 1.55145 1.72388 2.01114 2.27734 2.80782 2.93089 3.17731 3.28089 3.42500 3.51441 3.75671 3.79870 3.88816 4.02357 4.06855 4.11292 4.15438 4.23552 4.26857 4.37611 4.41794 4.50056 4.52055 4.65720 4.72920 4.75250 4.75738 4.78256 4.89398 4.95891 4.98633 5.07341 5.19443 5.20940 5.33500 5.39295 5.45256 5.84222 5.87134 6.04632 6.26181 6.32469 6.56837 7.05743 7.09782 7.52471 8.07555 8.68643 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.032609 B = 0.002039 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.440796 B =13726.550882 C =14009.273028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.068 3.932 13 N -0.670 5.670 14 C 0.080 3.920 15 H 0.039 0.961 16 C -0.108 4.108 17 C -0.129 4.129 18 C 0.096 3.904 19 N -0.600 5.600 20 C 0.492 3.508 21 O -0.586 6.586 22 C 0.065 3.935 23 H 0.132 0.868 24 C -0.141 4.141 25 C -0.143 4.143 26 C 0.034 3.966 27 O -0.390 6.390 28 C 0.115 3.885 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.342 0.658 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 -31.047 5.049 31.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.209 5.209 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.065 4.065 13 N -0.303 5.303 14 C -0.030 4.030 15 H 0.057 0.943 16 C -0.146 4.146 17 C -0.167 4.167 18 C -0.024 4.024 19 N -0.334 5.334 20 C 0.281 3.719 21 O -0.465 6.465 22 C 0.005 3.995 23 H 0.150 0.850 24 C -0.179 4.179 25 C -0.180 4.180 26 C -0.042 4.042 27 O -0.308 6.308 28 C -0.008 4.008 29 H 0.088 0.912 30 H 0.230 0.770 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.161 0.839 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.150 0.850 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.843 -30.622 4.980 31.154 hybrid contribution -0.152 1.456 -1.306 1.962 sum -2.995 -29.167 3.674 29.549 Atomic orbital electron populations 1.69678 1.06841 1.29300 1.50257 1.26076 0.96595 1.02499 0.96218 0.84845 0.77997 0.76954 0.78373 1.19808 1.19640 1.19395 1.19713 0.92719 0.83978 1.49942 0.90295 1.41930 1.09339 1.04722 1.64954 1.20799 0.88238 0.86089 0.82337 1.90492 1.15789 1.87928 1.56646 1.21554 0.93942 0.88117 1.02840 1.60189 1.18712 1.00380 1.50989 1.21900 0.95144 0.87679 0.98312 0.94314 1.21563 1.01131 0.97782 0.94168 1.21953 0.98030 0.93435 1.03318 1.22310 0.99681 0.98809 0.81637 1.48138 1.58460 1.17585 1.09231 1.21871 0.78918 0.87741 0.83351 1.90693 1.52337 1.75171 1.28318 1.22886 1.01096 0.89572 0.85983 0.85033 1.23293 1.00040 0.93460 1.01101 1.23296 1.05316 0.96892 0.92529 1.23712 0.96285 0.85018 0.99199 1.88507 1.71365 1.37802 1.33127 1.21514 0.95851 0.82352 1.01110 0.91244 0.76974 0.92332 0.87440 0.83913 0.90934 0.91945 0.87181 0.91710 0.86580 0.88859 0.90884 0.84999 0.87882 0.87749 0.87769 0.93421 0.91924 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.26 13.05 21.66 0.28 -49.98 16 2 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 3 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.33 -19.35 9.68 84.04 0.81 -18.53 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.57 -30.09 5.29 -306.97 -1.62 -31.71 16 10 C 0.44 21.46 7.82 87.66 0.69 22.15 16 11 O -0.62 -35.38 15.78 -3.07 -0.05 -35.43 16 12 C 0.07 2.43 5.97 85.56 0.51 2.94 16 13 N -0.67 -22.03 5.93 -495.17 -2.94 -24.97 16 14 C 0.08 2.00 2.64 44.99 0.12 2.11 16 15 H 0.04 1.03 7.80 -2.38 -0.02 1.01 16 16 C -0.11 -2.06 5.40 30.63 0.17 -1.89 16 17 C -0.13 -1.42 6.08 30.67 0.19 -1.24 16 18 C 0.10 0.92 5.72 86.36 0.49 1.41 16 19 N -0.60 -11.60 2.97 -818.92 -2.43 -14.03 16 20 C 0.49 11.96 6.97 87.66 0.61 12.57 16 21 O -0.59 -21.14 15.94 15.74 0.25 -20.89 16 22 C 0.07 1.03 3.06 30.32 0.09 1.13 16 23 H 0.13 1.36 7.47 -2.39 -0.02 1.34 16 24 C -0.14 -1.06 5.39 31.86 0.17 -0.88 16 25 C -0.14 -0.86 7.16 32.05 0.23 -0.63 16 26 C 0.03 0.47 7.78 72.65 0.56 1.03 16 27 O -0.39 -8.63 10.56 -130.19 -1.38 -10.01 16 28 C 0.12 2.84 5.70 86.36 0.49 3.33 16 29 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 31 H 0.06 1.94 8.06 -2.39 -0.02 1.93 16 32 H 0.11 3.41 7.42 -2.39 -0.02 3.39 16 33 H 0.34 12.22 8.06 -89.69 -0.72 11.50 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.29 7.43 -2.39 -0.02 1.27 16 36 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.12 0.39 4.48 -2.39 -0.01 0.37 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 0.74 7.84 -2.39 -0.02 0.72 16 41 H 0.13 0.01 6.97 -2.38 -0.02 -0.01 16 42 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 1.91 7.01 -2.39 -0.02 1.89 16 47 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -81.66 374.42 -0.71 -82.37 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: -0.45 Total: 35.84 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: 5.60 Total: 23.20 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -6.71 Total: -120.68 kcal Atomic # 8 Polarization: -65.16 SS G_CDS: -1.17 Total: -66.33 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -81.66 -0.71 -82.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207160616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.669 kcal (2) G-P(sol) polarization free energy of solvation -81.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds