Wall clock time and date at job start Fri Apr 10 2020 18:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86801 * 120.00254 * 2 1 4 4 H 1.48497 * 109.47218 * 239.99902 * 3 2 1 5 5 H 1.48498 * 109.47077 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46789 * 120.00082 * 3 2 1 7 7 C 1.38953 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00604 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00290 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99901 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00444 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47724 * 180.02562 * 12 10 9 14 14 C 1.46892 * 111.00480 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.49651 * 325.06110 * 14 13 12 16 16 C 1.53042 * 109.52780 * 85.14073 * 14 13 12 17 17 C 1.53039 * 109.53631 * 181.33535 * 16 14 13 18 18 C 1.53629 * 109.24451 * 298.50791 * 17 16 14 19 19 N 1.46932 * 108.53776 * 54.86200 * 18 17 16 20 20 C 1.34773 * 120.63088 * 126.37124 * 19 18 17 21 21 O 1.21281 * 119.99798 * 179.71821 * 20 19 18 22 22 C 1.50695 * 120.00037 * 359.71764 * 20 19 18 23 23 H 1.09005 * 110.55176 * 306.42505 * 22 20 19 24 24 C 1.54994 * 110.62188 * 69.47444 * 22 20 19 25 25 C 1.54807 * 102.09494 * 155.52471 * 24 22 20 26 26 C 1.54106 * 104.18688 * 339.12124 * 25 24 22 27 27 O 1.43739 * 107.29313 * 357.97161 * 26 25 24 28 28 C 1.46932 * 118.73845 * 306.09076 * 19 18 17 29 29 H 0.97001 * 119.99893 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00140 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47205 * 59.99050 * 12 10 9 32 32 H 1.09004 * 109.47112 * 299.99982 * 12 10 9 33 33 H 1.00903 * 110.99725 * 303.95720 * 13 12 10 34 34 H 1.09001 * 109.45692 * 301.35377 * 16 14 13 35 35 H 1.08995 * 109.45603 * 61.31394 * 16 14 13 36 36 H 1.08989 * 109.50044 * 58.58613 * 17 16 14 37 37 H 1.09003 * 109.49375 * 178.68733 * 17 16 14 38 38 H 1.09001 * 109.74155 * 295.12575 * 18 17 16 39 39 H 1.08999 * 109.66804 * 174.54763 * 18 17 16 40 40 H 1.09005 * 110.90701 * 37.32989 * 24 22 20 41 41 H 1.09000 * 110.91134 * 273.72903 * 24 22 20 42 42 H 1.08997 * 110.48888 * 220.44580 * 25 24 22 43 43 H 1.09000 * 110.48626 * 97.79808 * 25 24 22 44 44 H 1.09004 * 109.87710 * 117.39475 * 26 25 24 45 45 H 1.08997 * 109.87565 * 238.54037 * 26 25 24 46 46 H 1.08993 * 109.58687 * 173.65088 * 28 19 18 47 47 H 1.09003 * 109.58602 * 293.93604 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0031 12 6 1.2437 -4.8630 -0.0032 13 7 2.1981 -5.9796 -0.0037 14 6 1.4979 -7.2709 -0.0049 15 1 0.5838 -7.1895 0.5833 16 6 1.1471 -7.6612 -1.4425 17 6 0.3882 -8.9902 -1.4413 18 6 1.2872 -10.0861 -0.8488 19 7 1.7421 -9.6502 0.4786 20 6 1.5604 -10.4353 1.5588 21 8 1.9449 -10.0663 2.6483 22 6 0.8794 -11.7717 1.4130 23 1 -0.0848 -11.6578 0.9175 24 6 1.7826 -12.7627 0.6356 25 6 1.2609 -14.1337 1.1304 26 6 0.5540 -13.8109 2.4611 27 8 0.7174 -12.4031 2.7013 28 6 2.4044 -8.3447 0.6049 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3907 -0.0016 31 1 0.6165 -4.9201 -0.8929 32 1 0.6173 -4.9214 0.8870 33 1 2.8330 -5.9122 -0.7851 34 1 0.5221 -6.8866 -1.8869 35 1 2.0630 -7.7666 -2.0239 36 1 -0.5153 -8.8927 -0.8396 37 1 0.1184 -9.2560 -2.4634 38 1 2.1494 -10.2451 -1.4965 39 1 0.7220 -11.0134 -0.7550 40 1 2.8305 -12.6258 0.9030 41 1 1.6401 -12.6574 -0.4399 42 1 2.0908 -14.8205 1.2961 43 1 0.5539 -14.5536 0.4149 44 1 -0.5060 -14.0535 2.3861 45 1 1.0102 -14.3805 3.2708 46 1 2.5765 -8.1227 1.6580 47 1 3.3570 -8.3655 0.0754 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207160620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:36 Heat of formation + Delta-G solvation = -111.356986 kcal Electronic energy + Delta-G solvation = -27760.635443 eV Core-core repulsion = 23750.267569 eV Total energy + Delta-G solvation = -4010.367873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.89729 -39.31043 -38.31452 -37.50362 -35.22736 -33.86536 -32.71105 -32.25679 -31.26115 -30.85722 -29.37791 -26.27719 -25.93817 -24.20907 -23.51051 -22.58646 -21.94297 -20.91242 -19.60395 -19.10584 -17.95128 -17.88146 -16.93604 -16.40294 -16.16206 -15.56749 -15.35252 -15.30295 -15.04760 -14.66871 -14.52065 -14.15506 -14.06044 -13.96728 -13.79487 -13.45281 -13.24887 -13.11791 -12.67692 -12.36793 -12.17141 -12.11297 -11.96098 -11.80939 -11.51904 -11.43048 -11.33396 -11.24949 -11.08337 -11.01304 -10.79855 -10.43245 -10.28949 -10.20359 -9.76561 -9.49041 -8.94913 -8.43638 -8.05170 -7.94933 -6.40620 -3.81427 2.32195 2.49466 3.21263 3.26816 3.31393 3.51335 3.91477 3.91627 4.08515 4.11326 4.26196 4.33933 4.50717 4.53795 4.57789 4.62316 4.64970 4.77495 4.91524 5.02797 5.10749 5.14417 5.17374 5.19648 5.26908 5.30960 5.34076 5.40117 5.47374 5.54301 5.58551 5.66521 5.73213 5.82042 5.97021 6.03886 6.08605 6.17287 6.28798 6.40738 7.11259 7.19706 7.56127 7.63589 7.96403 8.07049 8.62198 9.18779 9.55129 10.06609 10.77042 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.032895 B = 0.002020 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.980227 B =13859.253491 C =14090.903528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.053 3.947 13 N -0.660 5.660 14 C 0.076 3.924 15 H 0.081 0.919 16 C -0.154 4.154 17 C -0.131 4.131 18 C 0.102 3.898 19 N -0.608 5.608 20 C 0.520 3.480 21 O -0.514 6.514 22 C 0.060 3.940 23 H 0.095 0.905 24 C -0.145 4.145 25 C -0.155 4.155 26 C 0.043 3.957 27 O -0.348 6.348 28 C 0.125 3.875 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.351 0.649 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.495 -28.798 -4.932 29.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.292 5.292 14 C -0.035 4.035 15 H 0.099 0.901 16 C -0.193 4.193 17 C -0.170 4.170 18 C -0.021 4.021 19 N -0.344 5.344 20 C 0.306 3.694 21 O -0.388 6.388 22 C -0.001 4.001 23 H 0.113 0.887 24 C -0.183 4.183 25 C -0.192 4.192 26 C -0.034 4.034 27 O -0.265 6.265 28 C 0.002 3.998 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.171 0.829 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.120 0.880 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.504 -28.295 -3.410 28.610 hybrid contribution -0.733 0.713 -1.274 1.633 sum -3.237 -27.582 -4.684 28.163 Atomic orbital electron populations 1.69601 1.05936 1.28259 1.50542 1.25266 0.95647 0.99739 0.97319 0.85909 0.78751 0.80424 0.79081 1.19932 1.20992 1.19858 1.19658 0.93353 0.82232 1.47675 0.87956 1.41853 1.09192 1.04595 1.64354 1.19793 0.88388 0.84701 0.84533 1.90525 1.13738 1.87056 1.55391 1.21688 0.94299 0.90781 1.01197 1.59982 1.18571 0.99310 1.51336 1.21893 0.97098 0.89735 0.94801 0.90110 1.22343 1.01047 0.97389 0.98519 1.21955 0.98691 0.94952 1.01405 1.22003 0.98563 0.97710 0.83818 1.48014 1.59894 1.19090 1.07427 1.20118 0.79711 0.85425 0.84149 1.90756 1.49133 1.73287 1.25660 1.22982 0.98849 0.92028 0.86265 0.88745 1.23193 1.00792 0.93610 1.00717 1.22951 1.01235 0.97634 0.97405 1.23254 1.00013 0.82532 0.97615 1.89045 1.93757 1.18577 1.25170 1.21556 0.94514 0.79649 1.04034 0.91827 0.77467 0.93802 0.89574 0.82871 0.91258 0.91272 0.91226 0.90507 0.90795 0.89834 0.89712 0.89126 0.89956 0.90178 0.91949 0.89358 0.88037 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 10 C 0.44 10.47 7.82 -10.99 -0.09 10.38 16 11 O -0.58 -15.94 15.78 5.55 0.09 -15.86 16 12 C 0.05 0.93 5.97 -4.98 -0.03 0.90 16 13 N -0.66 -10.53 5.88 -107.87 -0.63 -11.17 16 14 C 0.08 0.94 2.62 -67.59 -0.18 0.76 16 15 H 0.08 1.06 7.80 -51.93 -0.41 0.65 16 16 C -0.15 -1.44 5.14 -26.69 -0.14 -1.58 16 17 C -0.13 -0.90 6.10 -26.38 -0.16 -1.06 16 18 C 0.10 0.65 5.73 -3.48 -0.02 0.63 16 19 N -0.61 -6.23 2.97 -172.49 -0.51 -6.74 16 20 C 0.52 6.49 7.11 -10.99 -0.08 6.41 16 21 O -0.51 -9.01 15.98 -13.48 -0.22 -9.23 16 22 C 0.06 0.54 2.75 -26.83 -0.07 0.47 16 23 H 0.10 0.64 7.40 -51.93 -0.38 0.26 16 24 C -0.15 -0.86 5.93 -24.73 -0.15 -1.01 16 25 C -0.15 -0.72 7.01 -25.20 -0.18 -0.90 16 26 C 0.04 0.29 7.70 37.74 0.29 0.58 16 27 O -0.35 -4.01 10.80 -54.27 -0.59 -4.60 16 28 C 0.12 1.54 6.04 -3.71 -0.02 1.52 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 31 H 0.04 0.68 7.43 -51.93 -0.39 0.30 16 32 H 0.09 1.45 8.06 -51.93 -0.42 1.03 16 33 H 0.35 5.65 8.18 -39.29 -0.32 5.33 16 34 H 0.07 0.70 7.44 -51.93 -0.39 0.31 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.51 8.14 -51.94 -0.42 0.09 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.35 4.64 -51.93 -0.24 0.11 16 40 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 41 H 0.09 0.32 6.68 -51.93 -0.35 -0.03 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.10 1.56 7.00 -51.93 -0.36 1.19 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -35.39 375.02 -8.93 -44.32 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -7.31 Total: 10.81 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -1.06 Total: 9.02 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.48 Total: -56.34 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.71 Total: -29.68 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.39 -8.93 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207160620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.035 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds