Wall clock time and date at job start Fri Apr 10 2020 18:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48499 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47083 * 299.99934 * 3 2 1 6 6 H 1.48500 * 109.47014 * 60.00432 * 3 2 1 7 7 C 1.38951 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99552 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00205 * 179.97438 * 9 7 2 11 11 O 1.21299 * 120.00172 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00152 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47100 * 180.02562 * 12 10 9 14 14 C 1.46906 * 111.00337 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.49466 * 324.93507 * 14 13 12 16 16 C 1.53036 * 109.49641 * 84.99703 * 14 13 12 17 17 C 1.53044 * 109.53658 * 181.31985 * 16 14 13 18 18 C 1.53188 * 109.31253 * 298.63699 * 17 16 14 19 19 N 1.46925 * 108.77857 * 54.63632 * 18 17 16 20 20 C 1.34774 * 120.63149 * 126.36557 * 19 18 17 21 21 O 1.21288 * 119.99525 * 179.97438 * 20 19 18 22 22 C 1.50698 * 120.00021 * 0.02562 * 20 19 18 23 23 H 1.08997 * 109.99074 * 56.08674 * 22 20 19 24 24 C 1.54096 * 109.87721 * 294.99603 * 22 20 19 25 25 C 1.54817 * 104.18822 * 238.54829 * 24 22 20 26 26 C 1.54991 * 102.09285 * 339.11830 * 25 24 22 27 27 O 1.43749 * 109.87450 * 177.16585 * 22 20 19 28 28 C 1.46927 * 118.73373 * 306.64395 * 19 18 17 29 29 H 0.97002 * 120.00428 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00087 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47383 * 60.00417 * 12 10 9 32 32 H 1.09003 * 109.47503 * 299.99954 * 12 10 9 33 33 H 1.00899 * 111.00432 * 303.95177 * 13 12 10 34 34 H 1.08997 * 109.45961 * 61.30555 * 16 14 13 35 35 H 1.09002 * 109.45068 * 301.33595 * 16 14 13 36 36 H 1.09001 * 109.49672 * 178.68322 * 17 16 14 37 37 H 1.08999 * 109.49645 * 58.58811 * 17 16 14 38 38 H 1.09001 * 109.58806 * 294.84319 * 18 17 16 39 39 H 1.09001 * 109.70282 * 174.49139 * 18 17 16 40 40 H 1.09004 * 110.48850 * 119.87095 * 24 22 20 41 41 H 1.08996 * 110.48992 * 357.22676 * 24 22 20 42 42 H 1.08996 * 110.90849 * 97.31959 * 25 24 22 43 43 H 1.09004 * 110.90250 * 220.92384 * 25 24 22 44 44 H 1.09000 * 110.62043 * 155.51925 * 26 25 24 45 45 H 1.08998 * 110.62229 * 278.52472 * 26 25 24 46 46 H 1.09005 * 109.58489 * 173.14007 * 28 19 18 47 47 H 1.08997 * 109.58576 * 293.56620 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2102 -3.5578 -0.0022 12 6 1.2438 -4.8629 -0.0032 13 7 2.1984 -5.9794 -0.0037 14 6 1.4982 -7.2708 -0.0049 15 1 0.5852 -7.1902 0.5851 16 6 1.1446 -7.6588 -1.4424 17 6 0.3861 -8.9881 -1.4420 18 6 1.2816 -10.0821 -0.8522 19 7 1.7440 -9.6509 0.4740 20 6 1.5638 -10.4375 1.5534 21 8 1.9506 -10.0703 2.6428 22 6 0.8828 -11.7738 1.4067 23 1 1.4064 -12.3797 0.6672 24 6 -0.5825 -11.5706 0.9751 25 6 -1.4060 -12.2501 2.0962 26 6 -0.3651 -13.2090 2.7280 27 8 0.8650 -12.4549 2.6725 28 6 2.4012 -8.3430 0.6021 29 1 -0.4851 0.8400 -0.0004 30 1 0.3534 -2.3907 -0.0016 31 1 0.6168 -4.9201 -0.8930 32 1 0.6174 -4.9213 0.8870 33 1 2.8333 -5.9121 -0.7850 34 1 2.0594 -7.7630 -2.0259 35 1 0.5185 -6.8835 -1.8841 36 1 0.1142 -9.2521 -2.4640 37 1 -0.5163 -8.8918 -0.8383 38 1 2.1401 -10.2426 -1.5042 39 1 0.7158 -11.0091 -0.7582 40 1 -0.7689 -12.0560 0.0171 41 1 -0.8195 -10.5082 0.9180 42 1 -1.7512 -11.5163 2.8245 43 1 -2.2452 -12.8070 1.6793 44 1 -0.6296 -13.4362 3.7607 45 1 -0.2809 -14.1242 2.1420 46 1 2.5718 -8.1214 1.6557 47 1 3.3529 -8.3587 0.0711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207160621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:42 Heat of formation + Delta-G solvation = -110.834062 kcal Electronic energy + Delta-G solvation = -27967.349626 eV Core-core repulsion = 23957.004428 eV Total energy + Delta-G solvation = -4010.345198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97383 -39.27549 -38.30302 -37.49738 -35.25325 -33.87614 -32.66867 -32.29809 -31.27021 -30.87530 -29.34490 -26.27538 -25.89699 -24.18455 -23.41154 -22.56954 -22.11169 -21.03641 -19.55435 -19.05206 -17.90207 -17.79963 -16.83722 -16.63733 -16.17246 -15.50098 -15.37300 -15.25592 -14.94836 -14.70286 -14.48563 -14.15385 -14.12967 -13.96435 -13.77991 -13.50824 -13.25389 -13.15619 -12.62871 -12.22585 -12.19216 -12.04856 -11.93171 -11.67717 -11.53505 -11.50032 -11.37279 -11.24939 -11.08829 -11.03789 -10.80127 -10.46293 -10.33898 -10.22280 -9.66387 -9.51904 -8.93522 -8.44353 -8.05954 -7.95758 -6.41708 -3.82390 2.38129 2.50135 3.16715 3.27327 3.34836 3.52438 3.90454 3.94878 4.07309 4.13180 4.27946 4.32558 4.47551 4.55221 4.56917 4.63866 4.71967 4.86483 4.92236 5.06813 5.08812 5.15025 5.17717 5.21717 5.26224 5.30288 5.34264 5.40532 5.48834 5.56758 5.59273 5.66085 5.72832 5.81300 5.96153 6.03422 6.08801 6.18049 6.27982 6.40902 7.12860 7.19656 7.55753 7.62734 7.98782 8.06645 8.61198 9.18152 9.54286 10.05630 10.76132 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.025960 B = 0.002127 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.322558 B =13162.764566 C =13234.646214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.582 6.582 12 C 0.053 3.947 13 N -0.660 5.660 14 C 0.077 3.923 15 H 0.079 0.921 16 C -0.154 4.154 17 C -0.130 4.130 18 C 0.100 3.900 19 N -0.609 5.609 20 C 0.514 3.486 21 O -0.515 6.515 22 C 0.062 3.938 23 H 0.093 0.907 24 C -0.148 4.148 25 C -0.155 4.155 26 C 0.044 3.956 27 O -0.347 6.347 28 C 0.124 3.876 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.352 0.648 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.101 0.899 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.690 -27.183 -3.998 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.292 5.292 14 C -0.035 4.035 15 H 0.098 0.902 16 C -0.193 4.193 17 C -0.169 4.169 18 C -0.023 4.023 19 N -0.345 5.345 20 C 0.300 3.700 21 O -0.389 6.389 22 C 0.000 4.000 23 H 0.111 0.889 24 C -0.186 4.186 25 C -0.192 4.192 26 C -0.033 4.033 27 O -0.265 6.265 28 C 0.002 3.998 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.172 0.828 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.119 0.881 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.509 -26.781 -2.524 27.458 hybrid contribution -0.857 0.864 -1.273 1.761 sum -6.366 -25.917 -3.797 26.956 Atomic orbital electron populations 1.69619 1.05944 1.28050 1.50750 1.25270 0.95647 0.99751 0.97359 0.85795 0.79734 0.81106 0.77688 1.19195 1.20790 1.20729 1.19756 0.93412 0.82201 1.47385 0.87844 1.41865 1.09195 1.04618 1.64388 1.19795 0.88391 0.84700 0.84499 1.90531 1.13730 1.87053 1.55327 1.21687 0.94302 0.90800 1.01169 1.59986 1.18556 0.99292 1.51368 1.21807 0.97093 0.89804 0.94800 0.90229 1.22345 1.01074 0.97366 0.98530 1.21868 0.98642 0.94980 1.01402 1.21907 0.98620 0.97898 0.83886 1.48030 1.59906 1.19058 1.07548 1.20425 0.79565 0.85866 0.84127 1.90749 1.48979 1.73484 1.25698 1.22625 0.96855 0.92267 0.88217 0.88917 1.23035 0.92576 1.03178 0.99808 1.23164 0.98663 0.99344 0.98074 1.23656 0.83168 0.94197 1.02283 1.89036 1.39784 1.62912 1.34788 1.21456 0.94664 0.79699 1.03991 0.91935 0.77482 0.93806 0.89601 0.82844 0.91247 0.91269 0.90473 0.91339 0.90925 0.89685 0.89388 0.89667 0.90029 0.89647 0.88429 0.91794 0.88066 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.56 -14.37 5.29 -10.97 -0.06 -14.43 16 10 C 0.44 10.45 7.82 -10.99 -0.09 10.36 16 11 O -0.58 -15.92 15.78 5.54 0.09 -15.83 16 12 C 0.05 0.93 5.97 -4.98 -0.03 0.90 16 13 N -0.66 -10.52 5.88 -108.10 -0.64 -11.15 16 14 C 0.08 0.93 2.60 -67.82 -0.18 0.76 16 15 H 0.08 1.02 7.80 -51.93 -0.41 0.62 16 16 C -0.15 -1.43 5.14 -26.69 -0.14 -1.57 16 17 C -0.13 -0.87 6.08 -26.61 -0.16 -1.03 16 18 C 0.10 0.65 5.83 -3.71 -0.02 0.63 16 19 N -0.61 -6.32 2.98 -173.03 -0.52 -6.83 16 20 C 0.51 6.45 6.89 -10.99 -0.08 6.38 16 21 O -0.52 -9.06 15.94 -14.02 -0.22 -9.28 16 22 C 0.06 0.56 2.96 -27.31 -0.08 0.48 16 23 H 0.09 0.63 7.76 -51.93 -0.40 0.22 16 24 C -0.15 -0.89 4.94 -25.20 -0.12 -1.02 16 25 C -0.15 -0.89 7.15 -24.72 -0.18 -1.07 16 26 C 0.04 0.30 7.72 38.21 0.29 0.59 16 27 O -0.35 -3.97 10.74 -54.81 -0.59 -4.56 16 28 C 0.12 1.55 6.01 -3.93 -0.02 1.52 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 31 H 0.04 0.68 7.42 -51.93 -0.39 0.29 16 32 H 0.09 1.43 8.06 -51.93 -0.42 1.02 16 33 H 0.35 5.66 8.18 -39.29 -0.32 5.34 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.69 7.43 -51.93 -0.39 0.30 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.37 4.42 -51.93 -0.23 0.14 16 40 H 0.09 0.29 7.55 -51.93 -0.39 -0.10 16 41 H 0.08 0.59 7.51 -51.93 -0.39 0.20 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.10 1.57 7.01 -51.93 -0.36 1.20 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -35.41 374.58 -8.96 -44.37 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -7.33 Total: 10.94 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -1.04 Total: 8.89 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.48 Total: -56.34 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.72 Total: -29.67 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.41 -8.96 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207160621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.469 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds