Wall clock time and date at job start Fri Apr 10 2020 18:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48499 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47083 * 299.99934 * 3 2 1 6 6 H 1.48500 * 109.47014 * 60.00432 * 3 2 1 7 7 C 1.38951 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99552 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00205 * 179.97438 * 9 7 2 11 11 O 1.21299 * 120.00172 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00152 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47100 * 180.02562 * 12 10 9 14 14 C 1.46906 * 111.00337 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.49466 * 324.93507 * 14 13 12 16 16 C 1.53036 * 109.49641 * 84.99703 * 14 13 12 17 17 C 1.53044 * 109.53658 * 181.31985 * 16 14 13 18 18 C 1.53188 * 109.31253 * 298.63699 * 17 16 14 19 19 N 1.46925 * 108.77857 * 54.63632 * 18 17 16 20 20 C 1.34774 * 120.63149 * 126.36557 * 19 18 17 21 21 O 1.21288 * 119.99525 * 179.97438 * 20 19 18 22 22 C 1.50698 * 120.00021 * 0.02562 * 20 19 18 23 23 H 1.08997 * 109.99074 * 56.08674 * 22 20 19 24 24 C 1.54096 * 109.87721 * 294.99603 * 22 20 19 25 25 C 1.54817 * 104.18822 * 238.54829 * 24 22 20 26 26 C 1.54991 * 102.09285 * 339.11830 * 25 24 22 27 27 O 1.43749 * 109.87450 * 177.16585 * 22 20 19 28 28 C 1.46927 * 118.73373 * 306.64395 * 19 18 17 29 29 H 0.97002 * 120.00428 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00087 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47383 * 60.00417 * 12 10 9 32 32 H 1.09003 * 109.47503 * 299.99954 * 12 10 9 33 33 H 1.00899 * 111.00432 * 303.95177 * 13 12 10 34 34 H 1.08997 * 109.45961 * 61.30555 * 16 14 13 35 35 H 1.09002 * 109.45068 * 301.33595 * 16 14 13 36 36 H 1.09001 * 109.49672 * 178.68322 * 17 16 14 37 37 H 1.08999 * 109.49645 * 58.58811 * 17 16 14 38 38 H 1.09001 * 109.58806 * 294.84319 * 18 17 16 39 39 H 1.09001 * 109.70282 * 174.49139 * 18 17 16 40 40 H 1.09004 * 110.48850 * 119.87095 * 24 22 20 41 41 H 1.08996 * 110.48992 * 357.22676 * 24 22 20 42 42 H 1.08996 * 110.90849 * 97.31959 * 25 24 22 43 43 H 1.09004 * 110.90250 * 220.92384 * 25 24 22 44 44 H 1.09000 * 110.62043 * 155.51925 * 26 25 24 45 45 H 1.08998 * 110.62229 * 278.52472 * 26 25 24 46 46 H 1.09005 * 109.58489 * 173.14007 * 28 19 18 47 47 H 1.08997 * 109.58576 * 293.56620 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2102 -3.5578 -0.0022 12 6 1.2438 -4.8629 -0.0032 13 7 2.1984 -5.9794 -0.0037 14 6 1.4982 -7.2708 -0.0049 15 1 0.5852 -7.1902 0.5851 16 6 1.1446 -7.6588 -1.4424 17 6 0.3861 -8.9881 -1.4420 18 6 1.2816 -10.0821 -0.8522 19 7 1.7440 -9.6509 0.4740 20 6 1.5638 -10.4375 1.5534 21 8 1.9506 -10.0703 2.6428 22 6 0.8828 -11.7738 1.4067 23 1 1.4064 -12.3797 0.6672 24 6 -0.5825 -11.5706 0.9751 25 6 -1.4060 -12.2501 2.0962 26 6 -0.3651 -13.2090 2.7280 27 8 0.8650 -12.4549 2.6725 28 6 2.4012 -8.3430 0.6021 29 1 -0.4851 0.8400 -0.0004 30 1 0.3534 -2.3907 -0.0016 31 1 0.6168 -4.9201 -0.8930 32 1 0.6174 -4.9213 0.8870 33 1 2.8333 -5.9121 -0.7850 34 1 2.0594 -7.7630 -2.0259 35 1 0.5185 -6.8835 -1.8841 36 1 0.1142 -9.2521 -2.4640 37 1 -0.5163 -8.8918 -0.8383 38 1 2.1401 -10.2426 -1.5042 39 1 0.7158 -11.0091 -0.7582 40 1 -0.7689 -12.0560 0.0171 41 1 -0.8195 -10.5082 0.9180 42 1 -1.7512 -11.5163 2.8245 43 1 -2.2452 -12.8070 1.6793 44 1 -0.6296 -13.4362 3.7607 45 1 -0.2809 -14.1242 2.1420 46 1 2.5718 -8.1214 1.6557 47 1 3.3529 -8.3587 0.0711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207160621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:40 Heat of formation + Delta-G solvation = -138.205063 kcal Electronic energy + Delta-G solvation = -27968.536522 eV Core-core repulsion = 23957.004428 eV Total energy + Delta-G solvation = -4011.532093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.77699 -40.34296 -39.76645 -38.59752 -36.47434 -35.82424 -33.45562 -33.23572 -33.02281 -31.76816 -30.21115 -27.87014 -26.67935 -25.81495 -24.15229 -23.37902 -22.61214 -21.94554 -21.19625 -20.14983 -19.84896 -18.59548 -17.81361 -17.55174 -17.33118 -16.93297 -16.40732 -16.25748 -16.18568 -15.84185 -15.70113 -15.38048 -15.23623 -14.98116 -14.63234 -14.51646 -14.47063 -13.99817 -13.91674 -13.59199 -13.34345 -13.33280 -12.90433 -12.73632 -12.65411 -12.42570 -12.39839 -12.18215 -12.12565 -12.07225 -11.97686 -11.73536 -11.62184 -11.53043 -11.15446 -10.51187 -10.40403 -10.03677 -9.80301 -9.28670 -8.48609 -5.97397 1.35402 1.40866 1.47444 1.55179 1.68586 2.02164 2.28144 2.87191 2.98989 3.18430 3.32414 3.49345 3.56197 3.77448 3.81896 3.86037 3.99128 4.02998 4.11793 4.24918 4.25803 4.28370 4.36402 4.42648 4.53168 4.56344 4.59833 4.69839 4.77339 4.78783 4.84254 4.86935 4.92590 4.99382 5.06510 5.13897 5.17119 5.32550 5.39596 5.40812 5.80157 5.86594 6.06450 6.33228 6.38360 6.57746 7.08596 7.10627 7.53519 8.08816 8.69029 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.025960 B = 0.002127 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.322558 B =13162.764566 C =13234.646214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.071 3.929 13 N -0.680 5.680 14 C 0.084 3.916 15 H 0.072 0.928 16 C -0.149 4.149 17 C -0.123 4.123 18 C 0.094 3.906 19 N -0.602 5.602 20 C 0.503 3.497 21 O -0.583 6.583 22 C 0.063 3.937 23 H 0.124 0.876 24 C -0.143 4.143 25 C -0.153 4.153 26 C 0.036 3.964 27 O -0.392 6.392 28 C 0.128 3.872 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.350 0.650 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.060 0.940 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.575 -28.952 -6.384 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.062 4.062 13 N -0.312 5.312 14 C -0.027 4.027 15 H 0.090 0.910 16 C -0.188 4.188 17 C -0.162 4.162 18 C -0.027 4.027 19 N -0.336 5.336 20 C 0.292 3.708 21 O -0.462 6.462 22 C 0.002 3.998 23 H 0.141 0.859 24 C -0.180 4.180 25 C -0.190 4.190 26 C -0.040 4.040 27 O -0.311 6.311 28 C 0.004 3.996 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.169 0.831 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.148 0.852 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.134 0.866 44 H 0.114 0.886 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.448 -28.581 -4.958 29.949 hybrid contribution -0.252 1.363 -0.508 1.477 sum -7.700 -27.218 -5.466 28.809 Atomic orbital electron populations 1.69673 1.06808 1.29283 1.50318 1.26056 0.96583 1.02444 0.96250 0.84862 0.77998 0.77040 0.78377 1.19864 1.19341 1.19697 1.19698 0.92693 0.84012 1.49887 0.90372 1.41928 1.09343 1.04711 1.64985 1.20855 0.88250 0.86156 0.82275 1.90497 1.15869 1.87959 1.56647 1.21494 0.93894 0.87874 1.02922 1.59913 1.19086 1.00404 1.51804 1.21753 0.96068 0.87777 0.97058 0.90959 1.22277 1.01759 0.99083 0.95670 1.21869 0.98034 0.93040 1.03249 1.22280 0.99682 0.99106 0.81642 1.48111 1.58822 1.17707 1.08928 1.21333 0.78798 0.87225 0.83465 1.90711 1.51968 1.75158 1.28338 1.22836 0.98715 0.90084 0.88200 0.85914 1.23114 0.90125 1.03125 1.01664 1.23176 0.99249 0.98923 0.97657 1.23913 0.81993 0.94968 1.03087 1.88998 1.41998 1.63773 1.36318 1.21216 0.95419 0.81378 1.01575 0.91252 0.76947 0.90892 0.88625 0.83079 0.90711 0.91389 0.87389 0.91228 0.89380 0.86633 0.85208 0.90678 0.92032 0.86583 0.88571 0.89173 0.92093 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.94 13.05 21.66 0.28 -49.66 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.33 -19.21 9.68 84.04 0.81 -18.39 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.80 5.29 -306.99 -1.62 -31.43 16 10 C 0.44 21.18 7.82 87.66 0.69 21.87 16 11 O -0.62 -35.28 15.78 -3.09 -0.05 -35.33 16 12 C 0.07 2.46 5.97 85.56 0.51 2.97 16 13 N -0.68 -21.87 5.88 -495.93 -2.91 -24.78 16 14 C 0.08 2.01 2.60 44.85 0.12 2.13 16 15 H 0.07 1.84 7.80 -2.39 -0.02 1.82 16 16 C -0.15 -2.41 5.14 30.62 0.16 -2.25 16 17 C -0.12 -1.15 6.08 30.67 0.19 -0.97 16 18 C 0.09 0.89 5.83 86.36 0.50 1.39 16 19 N -0.60 -11.95 2.98 -819.75 -2.44 -14.40 16 20 C 0.50 12.74 6.89 87.66 0.60 13.34 16 21 O -0.58 -21.99 15.94 15.66 0.25 -21.74 16 22 C 0.06 1.02 2.96 30.22 0.09 1.11 16 23 H 0.12 1.22 7.76 -2.39 -0.02 1.20 16 24 C -0.14 -1.25 4.94 31.59 0.16 -1.09 16 25 C -0.15 -1.39 7.15 31.90 0.23 -1.16 16 26 C 0.04 0.43 7.72 72.66 0.56 0.99 16 27 O -0.39 -8.83 10.74 -130.26 -1.40 -10.22 16 28 C 0.13 3.28 6.01 86.22 0.52 3.79 16 29 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 31 H 0.07 2.14 7.42 -2.39 -0.02 2.12 16 32 H 0.10 3.16 8.06 -2.39 -0.02 3.15 16 33 H 0.35 11.38 8.18 -89.69 -0.73 10.64 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.16 7.43 -2.39 -0.02 1.14 16 36 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.12 0.42 4.42 -2.39 -0.01 0.41 16 40 H 0.13 0.07 7.55 -2.39 -0.02 0.06 16 41 H 0.07 0.84 7.51 -2.39 -0.02 0.82 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16 44 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 2.06 7.01 -2.38 -0.02 2.05 16 47 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -82.71 374.58 -0.74 -83.45 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -0.47 Total: 35.21 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 5.60 Total: 23.46 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -6.70 Total: -120.26 kcal Atomic # 8 Polarization: -66.10 SS G_CDS: -1.20 Total: -67.30 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -82.71 -0.74 -83.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207160621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.759 kcal (2) G-P(sol) polarization free energy of solvation -82.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds