Wall clock time and date at job start Fri Apr 10 2020 18:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00190 * 2 1 4 4 H 1.48494 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46880 * 299.99752 * 3 2 1 6 6 H 1.48495 * 109.46880 * 59.99492 * 3 2 1 7 7 C 1.38949 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00291 * 180.02562 * 7 2 1 9 9 N 1.37105 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99843 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00209 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99437 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.46779 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00112 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.52634 * 35.07921 * 14 13 12 16 16 C 1.53043 * 109.49784 * 275.00000 * 14 13 12 17 17 C 1.53046 * 109.54006 * 178.68181 * 16 14 13 18 18 C 1.53190 * 109.30918 * 61.36318 * 17 16 14 19 19 N 1.46926 * 108.77781 * 305.36518 * 18 17 16 20 20 C 1.34775 * 120.62913 * 233.58287 * 19 18 17 21 21 O 1.21283 * 120.00189 * 5.09351 * 20 19 18 22 22 C 1.50701 * 120.00201 * 185.08957 * 20 19 18 23 23 H 1.08997 * 110.67316 * 305.08030 * 22 20 19 24 24 C 1.54994 * 110.61790 * 68.03982 * 22 20 19 25 25 C 1.54805 * 102.09546 * 155.52827 * 24 22 20 26 26 C 1.54103 * 104.18519 * 339.11923 * 25 24 22 27 27 O 1.43743 * 107.29580 * 357.97128 * 26 25 24 28 28 C 1.46922 * 118.73837 * 53.86479 * 19 18 17 29 29 H 0.97001 * 120.00274 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99728 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47009 * 60.00470 * 12 10 9 32 32 H 1.08998 * 109.47576 * 299.99773 * 12 10 9 33 33 H 1.00898 * 111.00393 * 303.95482 * 13 12 10 34 34 H 1.08998 * 109.45667 * 58.66006 * 16 14 13 35 35 H 1.09001 * 109.45013 * 298.69576 * 16 14 13 36 36 H 1.09000 * 109.49445 * 301.41213 * 17 16 14 37 37 H 1.08996 * 109.52383 * 181.33156 * 17 16 14 38 38 H 1.09003 * 109.58594 * 185.57773 * 18 17 16 39 39 H 1.09002 * 109.70230 * 65.22732 * 18 17 16 40 40 H 1.09006 * 110.90549 * 37.32560 * 24 22 20 41 41 H 1.08999 * 110.90732 * 273.72663 * 24 22 20 42 42 H 1.09001 * 110.48954 * 97.79644 * 25 24 22 43 43 H 1.08994 * 110.48693 * 220.31457 * 25 24 22 44 44 H 1.09006 * 109.88047 * 117.39361 * 26 25 24 45 45 H 1.08996 * 109.88513 * 238.54459 * 26 25 24 46 46 H 1.08996 * 109.58792 * 65.92364 * 28 19 18 47 47 H 1.08997 * 109.58773 * 186.35012 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0030 12 6 1.2436 -4.8629 0.0022 13 7 2.1982 -5.9795 0.0039 14 6 1.4979 -7.2708 0.0039 15 1 0.5859 -7.1907 -0.5876 16 6 1.1423 -7.6590 1.4409 17 6 0.3837 -8.9883 1.4392 18 6 1.2800 -10.0823 0.8505 19 7 1.7444 -9.6508 -0.4750 20 6 1.5666 -10.4378 -1.5545 21 8 0.9381 -11.4703 -1.4555 22 6 2.1487 -10.0348 -2.8849 23 1 1.8142 -9.0358 -3.1646 24 6 3.6968 -10.1009 -2.8458 25 6 4.0509 -10.2962 -4.3401 26 6 2.7558 -10.8489 -4.9661 27 8 1.7963 -10.9933 -3.9055 28 6 2.4118 -8.3479 -0.6001 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6174 -4.9212 -0.8881 32 1 0.6166 -4.9201 0.8919 33 1 2.8337 -5.9132 -0.7770 34 1 0.5157 -6.8839 1.8819 35 1 2.0564 -7.7633 2.0255 36 1 -0.5178 -8.8919 0.8342 37 1 0.1099 -9.2527 2.4606 38 1 0.7123 -11.0079 0.7554 39 1 2.1378 -10.2453 1.5031 40 1 4.0350 -10.9499 -2.2516 41 1 4.1164 -9.1697 -2.4651 42 1 4.3188 -9.3433 -4.7964 43 1 4.8653 -11.0124 -4.4487 44 1 2.3788 -10.1516 -5.7144 45 1 2.9500 -11.8184 -5.4246 46 1 3.3599 -8.3699 -0.0627 47 1 2.5911 -8.1287 -1.6526 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207160622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:47 Heat of formation + Delta-G solvation = -112.503716 kcal Electronic energy + Delta-G solvation = -28068.371036 eV Core-core repulsion = 24057.953436 eV Total energy + Delta-G solvation = -4010.417599 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.90654 -39.25572 -38.38994 -37.53946 -34.99926 -33.88691 -33.23971 -32.24373 -31.29351 -30.29011 -29.67140 -26.42837 -25.84683 -24.06084 -23.98444 -22.35761 -21.89471 -20.63347 -19.57022 -19.17416 -17.97162 -17.89759 -16.85231 -16.64873 -16.11275 -15.54441 -15.42346 -15.27037 -14.98178 -14.94107 -14.54683 -14.14343 -14.04963 -13.93295 -13.79940 -13.59200 -13.14101 -13.05310 -12.61089 -12.34215 -12.27795 -12.13857 -11.93967 -11.79119 -11.57044 -11.48543 -11.20817 -11.12733 -11.02894 -10.90757 -10.87766 -10.37646 -10.26696 -10.25765 -9.77861 -9.56229 -8.93154 -8.53166 -8.18458 -8.00828 -6.45845 -3.86904 2.27733 2.45228 3.13310 3.24320 3.31160 3.51152 3.85121 3.92013 4.06514 4.16638 4.28190 4.38574 4.48933 4.59055 4.66670 4.71609 4.80109 4.82677 4.95620 5.05552 5.05844 5.15785 5.20653 5.21168 5.30354 5.38919 5.41665 5.48630 5.53189 5.62749 5.63195 5.67696 5.74049 5.77194 5.90365 6.02860 6.11539 6.19143 6.27885 6.42690 7.05351 7.08492 7.51429 7.52063 7.88592 8.01886 8.56233 9.13576 9.49580 10.00378 10.71864 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.002483 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.714088 B =11274.879769 C =12358.773164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.660 5.660 14 C 0.073 3.927 15 H 0.048 0.952 16 C -0.110 4.110 17 C -0.134 4.134 18 C 0.112 3.888 19 N -0.606 5.606 20 C 0.524 3.476 21 O -0.522 6.522 22 C 0.058 3.942 23 H 0.096 0.904 24 C -0.145 4.145 25 C -0.155 4.155 26 C 0.043 3.957 27 O -0.349 6.349 28 C 0.103 3.897 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.349 0.651 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -19.958 -4.240 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.081 4.081 13 N -0.293 5.293 14 C -0.038 4.038 15 H 0.066 0.934 16 C -0.148 4.148 17 C -0.173 4.173 18 C -0.010 4.010 19 N -0.341 5.341 20 C 0.311 3.689 21 O -0.397 6.397 22 C -0.003 4.003 23 H 0.114 0.886 24 C -0.183 4.183 25 C -0.193 4.193 26 C -0.034 4.034 27 O -0.267 6.267 28 C -0.020 4.020 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.169 0.831 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.305 -20.501 -3.525 21.063 hybrid contribution -0.443 1.211 -0.948 1.600 sum 2.862 -19.290 -4.473 20.008 Atomic orbital electron populations 1.69618 1.05960 1.28122 1.50529 1.25273 0.95634 0.99768 0.97269 0.85800 0.79714 0.81105 0.77736 1.19190 1.20755 1.20718 1.19750 0.93391 0.82182 1.47572 0.87838 1.41877 1.09228 1.04638 1.64216 1.19762 0.88366 0.84664 0.84621 1.90521 1.13703 1.87043 1.55509 1.21725 0.94280 0.90809 1.01301 1.60090 1.18727 0.99316 1.51175 1.21955 0.95704 0.89099 0.97047 0.93417 1.21556 1.00947 0.96159 0.96113 1.21936 0.98742 0.95077 1.01522 1.21664 0.98540 0.98611 0.82192 1.47957 1.59414 1.18749 1.08015 1.20130 0.79988 0.83898 0.84895 1.90713 1.39577 1.24699 1.84713 1.22997 0.95101 0.94184 0.88047 0.88645 1.23167 0.93203 1.04181 0.97703 1.22948 0.98692 1.02691 0.94924 1.23259 0.87918 1.01848 0.90352 1.89013 1.51039 1.57692 1.28987 1.22104 0.96362 0.81772 1.01764 0.91877 0.77460 0.93792 0.89502 0.83082 0.91235 0.90746 0.91557 0.90270 0.88970 0.91087 0.89846 0.88860 0.89952 0.89948 0.91851 0.89395 0.89563 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -13.86 5.29 -10.96 -0.06 -13.92 16 10 C 0.44 9.93 7.82 -10.99 -0.09 9.84 16 11 O -0.58 -15.15 15.78 5.55 0.09 -15.06 16 12 C 0.05 0.85 5.97 -4.98 -0.03 0.82 16 13 N -0.66 -9.38 5.93 -107.62 -0.64 -10.01 16 14 C 0.07 0.80 2.66 -67.37 -0.18 0.62 16 15 H 0.05 0.55 7.80 -51.93 -0.41 0.14 16 16 C -0.11 -1.14 5.39 -26.69 -0.14 -1.28 16 17 C -0.13 -1.19 6.08 -26.61 -0.16 -1.36 16 18 C 0.11 1.05 6.44 -3.71 -0.02 1.03 16 19 N -0.61 -6.16 2.97 -172.51 -0.51 -6.67 16 20 C 0.52 6.46 7.09 -10.99 -0.08 6.38 16 21 O -0.52 -8.49 15.98 -13.51 -0.22 -8.70 16 22 C 0.06 0.58 2.75 -26.83 -0.07 0.51 16 23 H 0.10 0.83 7.25 -51.93 -0.38 0.46 16 24 C -0.14 -1.08 5.98 -24.73 -0.15 -1.23 16 25 C -0.15 -0.97 7.01 -25.20 -0.18 -1.15 16 26 C 0.04 0.34 7.70 37.73 0.29 0.63 16 27 O -0.35 -4.23 10.80 -54.29 -0.59 -4.82 16 28 C 0.10 0.94 4.90 -3.49 -0.02 0.92 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 30 H 0.39 9.26 7.90 -40.82 -0.32 8.93 16 31 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 32 H 0.09 1.34 7.41 -51.93 -0.39 0.96 16 33 H 0.35 4.95 8.06 -39.29 -0.32 4.64 16 34 H 0.07 0.78 7.43 -51.93 -0.39 0.39 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.97 7.00 -51.93 -0.36 0.61 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 41 H 0.09 0.56 6.89 -51.93 -0.36 0.20 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 0.64 4.92 -51.93 -0.26 0.38 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -33.74 375.16 -8.96 -42.70 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -7.32 Total: 10.70 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -1.07 Total: 7.91 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.48 Total: -54.01 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.71 Total: -28.58 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.74 -8.96 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207160622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.803 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds