Wall clock time and date at job start Fri Apr 10 2020 18:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00190 * 2 1 4 4 H 1.48494 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46880 * 299.99752 * 3 2 1 6 6 H 1.48495 * 109.46880 * 59.99492 * 3 2 1 7 7 C 1.38949 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00291 * 180.02562 * 7 2 1 9 9 N 1.37105 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99843 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00209 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99437 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.46779 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00112 * 180.02562 * 13 12 10 15 15 H 1.08999 * 109.52634 * 35.07921 * 14 13 12 16 16 C 1.53043 * 109.49784 * 275.00000 * 14 13 12 17 17 C 1.53046 * 109.54006 * 178.68181 * 16 14 13 18 18 C 1.53190 * 109.30918 * 61.36318 * 17 16 14 19 19 N 1.46926 * 108.77781 * 305.36518 * 18 17 16 20 20 C 1.34775 * 120.62913 * 233.58287 * 19 18 17 21 21 O 1.21283 * 120.00189 * 5.09351 * 20 19 18 22 22 C 1.50701 * 120.00201 * 185.08957 * 20 19 18 23 23 H 1.08997 * 110.67316 * 305.08030 * 22 20 19 24 24 C 1.54994 * 110.61790 * 68.03982 * 22 20 19 25 25 C 1.54805 * 102.09546 * 155.52827 * 24 22 20 26 26 C 1.54103 * 104.18519 * 339.11923 * 25 24 22 27 27 O 1.43743 * 107.29580 * 357.97128 * 26 25 24 28 28 C 1.46922 * 118.73837 * 53.86479 * 19 18 17 29 29 H 0.97001 * 120.00274 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99728 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47009 * 60.00470 * 12 10 9 32 32 H 1.08998 * 109.47576 * 299.99773 * 12 10 9 33 33 H 1.00898 * 111.00393 * 303.95482 * 13 12 10 34 34 H 1.08998 * 109.45667 * 58.66006 * 16 14 13 35 35 H 1.09001 * 109.45013 * 298.69576 * 16 14 13 36 36 H 1.09000 * 109.49445 * 301.41213 * 17 16 14 37 37 H 1.08996 * 109.52383 * 181.33156 * 17 16 14 38 38 H 1.09003 * 109.58594 * 185.57773 * 18 17 16 39 39 H 1.09002 * 109.70230 * 65.22732 * 18 17 16 40 40 H 1.09006 * 110.90549 * 37.32560 * 24 22 20 41 41 H 1.08999 * 110.90732 * 273.72663 * 24 22 20 42 42 H 1.09001 * 110.48954 * 97.79644 * 25 24 22 43 43 H 1.08994 * 110.48693 * 220.31457 * 25 24 22 44 44 H 1.09006 * 109.88047 * 117.39361 * 26 25 24 45 45 H 1.08996 * 109.88513 * 238.54459 * 26 25 24 46 46 H 1.08996 * 109.58792 * 65.92364 * 28 19 18 47 47 H 1.08997 * 109.58773 * 186.35012 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0030 12 6 1.2436 -4.8629 0.0022 13 7 2.1982 -5.9795 0.0039 14 6 1.4979 -7.2708 0.0039 15 1 0.5859 -7.1907 -0.5876 16 6 1.1423 -7.6590 1.4409 17 6 0.3837 -8.9883 1.4392 18 6 1.2800 -10.0823 0.8505 19 7 1.7444 -9.6508 -0.4750 20 6 1.5666 -10.4378 -1.5545 21 8 0.9381 -11.4703 -1.4555 22 6 2.1487 -10.0348 -2.8849 23 1 1.8142 -9.0358 -3.1646 24 6 3.6968 -10.1009 -2.8458 25 6 4.0509 -10.2962 -4.3401 26 6 2.7558 -10.8489 -4.9661 27 8 1.7963 -10.9933 -3.9055 28 6 2.4118 -8.3479 -0.6001 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6174 -4.9212 -0.8881 32 1 0.6166 -4.9201 0.8919 33 1 2.8337 -5.9132 -0.7770 34 1 0.5157 -6.8839 1.8819 35 1 2.0564 -7.7633 2.0255 36 1 -0.5178 -8.8919 0.8342 37 1 0.1099 -9.2527 2.4606 38 1 0.7123 -11.0079 0.7554 39 1 2.1378 -10.2453 1.5031 40 1 4.0350 -10.9499 -2.2516 41 1 4.1164 -9.1697 -2.4651 42 1 4.3188 -9.3433 -4.7964 43 1 4.8653 -11.0124 -4.4487 44 1 2.3788 -10.1516 -5.7144 45 1 2.9500 -11.8184 -5.4246 46 1 3.3599 -8.3699 -0.0627 47 1 2.5911 -8.1287 -1.6526 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207160622.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:44 Heat of formation + Delta-G solvation = -137.301839 kcal Electronic energy + Delta-G solvation = -28069.446363 eV Core-core repulsion = 24057.953436 eV Total energy + Delta-G solvation = -4011.492927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.74339 -40.27803 -39.81178 -38.63929 -36.28260 -35.67231 -34.05829 -33.25333 -32.91781 -31.26326 -30.47149 -27.88923 -26.77731 -25.67876 -24.69917 -23.20688 -22.46101 -21.52702 -21.11716 -20.22102 -19.86535 -18.70220 -18.00724 -17.59249 -17.20069 -16.82530 -16.43344 -16.30965 -16.10353 -16.02564 -15.72617 -15.50059 -15.27277 -15.02750 -14.73203 -14.59666 -14.20095 -13.94585 -13.81265 -13.57098 -13.39820 -13.31412 -12.94125 -12.89132 -12.74345 -12.41127 -12.38780 -12.35133 -12.10288 -11.89159 -11.81919 -11.75624 -11.67398 -11.49389 -11.02826 -10.62194 -10.32462 -9.99932 -9.79771 -9.36185 -8.45504 -5.93972 1.37190 1.37890 1.43625 1.57329 1.64128 2.07065 2.29987 2.73331 3.00334 3.22321 3.27412 3.49152 3.57019 3.69531 3.77244 3.92164 3.98861 4.02192 4.10664 4.15045 4.27123 4.27872 4.32464 4.41042 4.46461 4.58085 4.62182 4.64496 4.77104 4.77904 4.86446 4.88085 4.90668 4.98461 5.00416 5.13250 5.18543 5.34908 5.42017 5.43265 5.75825 5.88515 6.08904 6.20248 6.42264 6.61111 6.98892 7.14266 7.58227 8.12730 8.72110 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.002483 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.714088 B =11274.879769 C =12358.773164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.330 4.330 8 H 0.081 0.919 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.619 6.619 12 C 0.066 3.934 13 N -0.667 5.667 14 C 0.076 3.924 15 H 0.048 0.952 16 C -0.108 4.108 17 C -0.124 4.124 18 C 0.108 3.892 19 N -0.599 5.599 20 C 0.519 3.481 21 O -0.571 6.571 22 C 0.054 3.946 23 H 0.111 0.889 24 C -0.140 4.140 25 C -0.148 4.148 26 C 0.034 3.966 27 O -0.387 6.387 28 C 0.107 3.893 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.350 0.650 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 -19.666 -4.457 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.099 0.901 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.506 6.506 12 C -0.066 4.066 13 N -0.300 5.300 14 C -0.034 4.034 15 H 0.066 0.934 16 C -0.146 4.146 17 C -0.162 4.162 18 C -0.014 4.014 19 N -0.332 5.332 20 C 0.307 3.693 21 O -0.450 6.450 22 C -0.007 4.007 23 H 0.128 0.872 24 C -0.178 4.178 25 C -0.186 4.186 26 C -0.042 4.042 27 O -0.306 6.306 28 C -0.016 4.016 29 H 0.086 0.914 30 H 0.229 0.771 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.170 0.830 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.131 0.869 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.965 -20.203 -3.734 20.925 hybrid contribution -0.648 1.057 -0.864 1.511 sum 3.317 -19.147 -4.598 19.968 Atomic orbital electron populations 1.69678 1.06863 1.29182 1.50572 1.26029 0.96503 1.02428 0.96393 0.84885 0.78155 0.77198 0.78214 1.19598 1.19709 1.19829 1.19701 0.92720 0.83959 1.49615 0.90145 1.41958 1.09341 1.04806 1.65133 1.20804 0.88248 0.86016 0.82128 1.90492 1.15648 1.87916 1.56502 1.21556 0.94021 0.88112 1.02927 1.60068 1.18672 0.99835 1.51474 1.21977 0.95779 0.88009 0.97660 0.93449 1.21541 1.00935 0.96538 0.95596 1.21857 0.97934 0.94063 1.02379 1.21759 0.99197 0.98223 0.82180 1.47997 1.58648 1.18709 1.07875 1.20629 0.79287 0.83354 0.86004 1.90684 1.41920 1.26862 1.85542 1.23150 0.96715 0.94267 0.86537 0.87187 1.23187 0.91148 1.04826 0.98633 1.22959 0.98042 1.03777 0.93807 1.23483 0.88178 1.02735 0.89783 1.88976 1.52750 1.58589 1.30299 1.22150 0.96038 0.80421 1.02966 0.91378 0.77069 0.91679 0.88138 0.83022 0.91975 0.90762 0.92428 0.88519 0.90333 0.89414 0.90697 0.86908 0.88301 0.88815 0.90862 0.88837 0.88462 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.93 13.05 21.66 0.28 -48.64 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.99 41.98 29.55 68.60 2.03 44.01 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.33 -18.23 9.68 84.04 0.81 -17.42 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.58 -28.42 5.29 -306.99 -1.62 -30.05 16 10 C 0.44 19.70 7.82 87.66 0.69 20.38 16 11 O -0.62 -32.23 15.78 -3.04 -0.05 -32.27 16 12 C 0.07 2.06 5.97 85.56 0.51 2.57 16 13 N -0.67 -17.62 5.93 -494.42 -2.93 -20.56 16 14 C 0.08 1.50 2.66 45.14 0.12 1.62 16 15 H 0.05 0.97 7.80 -2.39 -0.02 0.95 16 16 C -0.11 -2.02 5.39 30.62 0.17 -1.86 16 17 C -0.12 -2.00 6.08 30.67 0.19 -1.81 16 18 C 0.11 1.90 6.44 86.36 0.56 2.46 16 19 N -0.60 -11.34 2.97 -818.08 -2.43 -13.77 16 20 C 0.52 12.54 7.09 87.66 0.62 13.17 16 21 O -0.57 -19.01 15.98 15.19 0.24 -18.77 16 22 C 0.05 1.03 2.75 30.53 0.08 1.11 16 23 H 0.11 1.71 7.25 -2.39 -0.02 1.70 16 24 C -0.14 -1.81 5.98 31.89 0.19 -1.62 16 25 C -0.15 -1.51 7.01 31.58 0.22 -1.29 16 26 C 0.03 0.50 7.70 72.36 0.56 1.06 16 27 O -0.39 -9.27 10.80 -130.76 -1.41 -10.69 16 28 C 0.11 1.69 4.90 86.51 0.42 2.11 16 29 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 30 H 0.40 18.67 7.90 -92.71 -0.73 17.94 16 31 H 0.07 1.79 8.06 -2.39 -0.02 1.77 16 32 H 0.10 2.90 7.41 -2.39 -0.02 2.88 16 33 H 0.35 9.22 8.06 -89.70 -0.72 8.49 16 34 H 0.06 1.27 7.43 -2.39 -0.02 1.26 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.65 7.00 -2.39 -0.02 1.63 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.10 8.05 -2.38 -0.02 1.08 16 41 H 0.11 0.99 6.89 -2.39 -0.02 0.97 16 42 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.10 1.25 4.92 -2.39 -0.01 1.24 16 Total: -1.00 -74.00 375.16 -0.74 -74.75 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.46 Total: 35.78 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 5.60 Total: 20.22 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -6.70 Total: -113.02 kcal Atomic # 8 Polarization: -60.51 SS G_CDS: -1.22 Total: -61.73 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -74.00 -0.74 -74.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207160622.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.556 kcal (2) G-P(sol) polarization free energy of solvation -74.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds