Wall clock time and date at job start Fri Apr 10 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 119.99979 * 2 1 4 4 H 1.48509 * 109.46994 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47413 * 300.00403 * 3 2 1 6 6 H 1.48506 * 109.47071 * 60.00755 * 3 2 1 7 7 C 1.38953 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99427 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99912 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99818 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99829 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46761 * 179.97438 * 12 10 9 14 14 C 1.48562 * 110.99570 * 174.70728 * 13 12 10 15 15 C 1.54377 * 104.59385 * 159.03985 * 14 13 12 16 16 H 1.08998 * 110.32559 * 95.03828 * 15 14 13 17 17 N 1.46506 * 110.32451 * 217.24799 * 15 14 13 18 18 C 1.34773 * 119.99989 * 270.63549 * 17 15 14 19 19 O 1.21280 * 119.99878 * 0.02562 * 18 17 15 20 20 C 1.50698 * 120.00130 * 179.97438 * 18 17 15 21 21 C 1.53003 * 109.47178 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.46878 * 180.02562 * 21 20 18 23 23 C 1.52998 * 117.49678 * 243.62357 * 22 21 20 24 24 C 1.52994 * 60.00151 * 252.51032 * 23 22 21 25 25 C 1.54259 * 105.06173 * 336.14512 * 15 14 13 26 26 H 1.08995 * 110.41781 * 118.94466 * 25 15 14 27 27 O 1.42903 * 110.32552 * 241.10918 * 25 15 14 28 28 C 1.48568 * 110.99975 * 290.11897 * 13 12 10 29 29 H 0.97003 * 119.99527 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99885 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.47224 * 59.99237 * 12 10 9 32 32 H 1.09004 * 109.47005 * 299.99456 * 12 10 9 33 33 H 1.09000 * 110.40753 * 277.81499 * 14 13 12 34 34 H 1.08997 * 110.41629 * 40.14019 * 14 13 12 35 35 H 0.97002 * 119.99571 * 90.63561 * 17 15 14 36 36 H 1.08997 * 109.47479 * 300.00675 * 20 18 17 37 37 H 1.09008 * 109.46611 * 60.00176 * 20 18 17 38 38 H 1.08993 * 109.47132 * 300.00089 * 21 20 18 39 39 H 1.09002 * 109.46739 * 60.00496 * 21 20 18 40 40 H 1.09001 * 115.54964 * 29.33158 * 22 21 20 41 41 H 1.09002 * 117.49866 * 0.02562 * 23 22 21 42 42 H 1.09005 * 117.49707 * 145.01823 * 23 22 21 43 43 H 1.08996 * 117.50354 * 252.51410 * 24 23 22 44 44 H 1.09003 * 117.51724 * 107.47550 * 24 23 22 45 45 H 0.96700 * 114.00311 * 177.08922 * 27 25 15 46 46 H 1.09002 * 110.40652 * 82.18048 * 28 13 12 47 47 H 1.08998 * 110.41255 * 319.74402 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8629 -0.0011 13 7 2.1982 -5.9795 -0.0016 14 6 1.4944 -7.2816 0.1257 15 6 2.4974 -8.3208 -0.4195 16 1 3.0706 -8.7587 0.3977 17 7 1.7920 -9.3663 -1.1651 18 6 1.3436 -10.4644 -0.5252 19 8 1.5236 -10.5869 0.6679 20 6 0.6176 -11.5395 -1.2920 21 6 0.2195 -12.6667 -0.3371 22 6 -0.5171 -13.7585 -1.1158 23 6 -1.9789 -14.0234 -0.7498 24 6 -0.8974 -15.0323 -0.3582 25 6 3.4266 -7.5261 -1.3600 26 1 4.4564 -7.5736 -1.0064 27 8 3.3364 -8.0343 -2.6926 28 6 2.9068 -6.0735 -1.3040 29 1 -0.4849 0.8401 0.0004 30 1 0.3533 -2.3906 0.0002 31 1 0.6172 -4.9204 -0.8912 32 1 0.6167 -4.9209 0.8887 33 1 1.2634 -7.4882 1.1708 34 1 0.5826 -7.2810 -0.4714 35 1 1.6478 -9.2681 -2.1193 36 1 -0.2770 -11.1180 -1.7502 37 1 1.2713 -11.9360 -2.0690 38 1 1.1144 -13.0882 0.1206 39 1 -0.4341 -12.2705 0.4402 40 1 -0.2335 -13.8616 -2.1632 41 1 -2.4159 -13.4195 0.0455 42 1 -2.6574 -14.3006 -1.5566 43 1 -0.8643 -15.9732 -0.9073 44 1 -0.6224 -15.0925 0.6948 45 1 3.8656 -7.5446 -3.3370 46 1 3.7391 -5.3704 -1.3355 47 1 2.2171 -5.8845 -2.1266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219399148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:07 Heat of formation + Delta-G solvation = -92.263255 kcal Electronic energy + Delta-G solvation = -27232.795275 eV Core-core repulsion = 23223.255368 eV Total energy + Delta-G solvation = -4009.539907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.35271 -39.09769 -37.99104 -37.64977 -35.82574 -34.33633 -33.81807 -32.54382 -31.29966 -30.21263 -28.09782 -26.65888 -25.10424 -24.13382 -22.71033 -21.55612 -21.03241 -20.60145 -20.43147 -19.21158 -17.91563 -17.71181 -17.11904 -16.23542 -16.12833 -15.92798 -15.56383 -15.20697 -14.93015 -14.72948 -14.51444 -14.17701 -13.95771 -13.77436 -13.51443 -13.27226 -12.93044 -12.87394 -12.44423 -12.13792 -12.09079 -11.90477 -11.65130 -11.55925 -11.52779 -11.44258 -11.34007 -11.11378 -10.88553 -10.65894 -10.36171 -10.25044 -10.22360 -10.11789 -9.91784 -9.52839 -9.15296 -8.58634 -8.09705 -7.97764 -6.43960 -3.84853 2.53478 2.91560 3.14567 3.25363 3.32343 3.45079 3.84407 3.87843 4.10108 4.28359 4.34461 4.49272 4.54770 4.59065 4.60031 4.66902 4.91228 5.02325 5.06321 5.12337 5.16426 5.22063 5.26758 5.30143 5.36285 5.43851 5.56636 5.63469 5.65587 5.74200 5.76130 5.81184 5.82132 5.93125 5.96581 6.05141 6.20270 6.22202 6.33642 6.94872 7.07826 7.39931 7.46906 7.53208 8.03691 8.15472 8.59013 9.15761 9.51783 10.03224 10.73849 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.025447 B = 0.001977 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.062705 B =14156.563672 C =14785.989702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.445 3.555 11 O -0.579 6.579 12 C 0.036 3.964 13 N -0.478 5.478 14 C 0.020 3.980 15 C 0.151 3.849 16 H 0.106 0.894 17 N -0.711 5.711 18 C 0.510 3.490 19 O -0.544 6.544 20 C -0.136 4.136 21 C -0.073 4.073 22 C -0.155 4.155 23 C -0.182 4.182 24 C -0.181 4.181 25 C 0.093 3.907 26 H 0.079 0.921 27 O -0.568 6.568 28 C 0.005 3.995 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.409 0.591 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.386 0.614 46 H 0.106 0.894 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 -24.363 -6.633 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.230 3.770 11 O -0.463 6.463 12 C -0.096 4.096 13 N -0.203 5.203 14 C -0.110 4.110 15 C 0.045 3.955 16 H 0.124 0.876 17 N -0.364 5.364 18 C 0.297 3.703 19 O -0.421 6.421 20 C -0.176 4.176 21 C -0.111 4.111 22 C -0.173 4.173 23 C -0.219 4.219 24 C -0.218 4.218 25 C 0.033 3.967 26 H 0.096 0.904 27 O -0.374 6.374 28 C -0.123 4.123 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.246 0.754 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.235 0.765 46 H 0.124 0.876 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.297 -24.598 -5.049 25.145 hybrid contribution -0.667 1.376 -1.408 2.079 sum -1.964 -23.222 -6.458 24.183 Atomic orbital electron populations 1.69623 1.05953 1.28072 1.50637 1.25271 0.95640 0.99746 0.97330 0.85795 0.79691 0.81112 0.77709 1.19218 1.20793 1.20721 1.19747 0.93384 0.82166 1.47516 0.87839 1.41863 1.09198 1.04579 1.64441 1.19656 0.88367 0.84440 0.84532 1.90496 1.13625 1.86964 1.55188 1.22074 0.94146 0.91514 1.01868 1.65112 1.23888 1.00533 1.30754 1.23611 0.95738 0.89421 1.02194 1.21721 0.92466 0.87279 0.94043 0.87645 1.45823 1.58046 1.19493 1.13027 1.20780 0.78823 0.82641 0.88088 1.90711 1.57300 1.78843 1.15265 1.21639 1.01211 0.95230 0.99534 1.20918 1.00593 0.92884 0.96726 1.22363 0.97438 0.97587 0.99915 1.23059 0.91699 1.03519 1.03616 1.22960 1.03949 0.93718 1.01199 1.22871 0.99060 0.92252 0.82469 0.90356 1.86241 1.73358 1.59478 1.18326 1.23934 1.00655 0.96599 0.91117 0.91911 0.77497 0.93146 0.89023 0.89213 0.93352 0.75404 0.88825 0.88862 0.90793 0.90968 0.87751 0.88683 0.88955 0.88912 0.88704 0.76515 0.87627 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 10 C 0.44 10.39 7.59 -10.98 -0.08 10.30 16 11 O -0.58 -15.31 14.42 5.55 0.08 -15.23 16 12 C 0.04 0.64 5.30 -4.98 -0.03 0.61 16 13 N -0.48 -7.91 5.06 -231.41 -1.17 -9.08 16 14 C 0.02 0.27 6.20 -2.18 -0.01 0.26 16 15 C 0.15 1.88 3.41 -66.55 -0.23 1.65 16 16 H 0.11 1.44 7.56 -51.93 -0.39 1.05 16 17 N -0.71 -7.51 4.85 -52.47 -0.25 -7.76 16 18 C 0.51 5.73 7.83 -10.99 -0.09 5.64 16 19 O -0.54 -8.19 15.63 5.56 0.09 -8.10 16 20 C -0.14 -1.03 5.66 -27.88 -0.16 -1.19 16 21 C -0.07 -0.60 4.78 -26.73 -0.13 -0.73 16 22 C -0.15 -1.04 5.74 -90.62 -0.52 -1.56 16 23 C -0.18 -1.18 10.18 -26.74 -0.27 -1.46 16 24 C -0.18 -1.18 10.25 -26.73 -0.27 -1.45 16 25 C 0.09 1.09 4.42 -25.35 -0.11 0.98 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 O -0.57 -5.28 11.53 -35.23 -0.41 -5.69 16 28 C 0.01 0.08 5.53 -2.18 -0.01 0.07 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 31 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 32 H 0.09 1.52 8.13 -51.93 -0.42 1.09 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 35 H 0.41 3.72 7.26 -40.82 -0.30 3.43 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.07 0.69 8.10 -51.93 -0.42 0.26 16 39 H 0.07 0.68 7.83 -51.93 -0.41 0.28 16 40 H 0.10 0.60 8.07 -51.93 -0.42 0.18 16 41 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.39 2.29 9.11 45.56 0.41 2.71 16 46 H 0.11 1.83 6.91 -51.93 -0.36 1.47 16 47 H 0.05 0.72 7.76 -51.93 -0.40 0.31 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -33.12 387.69 -9.07 -42.18 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -6.73 Total: 14.70 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -2.15 Total: 5.20 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.76 Total: -54.79 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.24 Total: -29.02 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.12 -9.07 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219399148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.081 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds