Wall clock time and date at job start Fri Apr 10 2020 18:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99629 * 2 1 4 4 H 1.48502 * 109.47029 * 269.99673 * 3 2 1 5 5 H 1.48503 * 109.46862 * 149.99901 * 3 2 1 6 6 H 1.48493 * 109.47366 * 30.00001 * 3 2 1 7 7 C 1.38808 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00485 * 207.26660 * 7 2 1 9 9 N 1.36937 * 119.99836 * 27.27936 * 7 2 1 10 10 C 1.47019 * 125.65003 * 193.62087 * 9 7 2 11 11 C 1.54319 * 107.27411 * 181.01997 * 10 9 7 12 12 H 1.09000 * 110.72056 * 140.55569 * 11 10 9 13 13 N 1.46505 * 110.72206 * 263.65488 * 11 10 9 14 14 C 1.34769 * 119.99793 * 273.54260 * 13 11 10 15 15 O 1.21288 * 120.00398 * 0.02562 * 14 13 11 16 16 C 1.50701 * 120.00011 * 179.97438 * 14 13 11 17 17 N 1.46498 * 109.47575 * 180.02562 * 16 14 13 18 18 C 1.34771 * 120.00302 * 180.02562 * 17 16 14 19 19 O 1.21281 * 120.00275 * 0.02562 * 18 17 16 20 20 C 1.50704 * 120.00322 * 180.02562 * 18 17 16 21 21 C 1.54266 * 110.03186 * 297.16712 * 20 18 17 22 22 C 1.54887 * 104.19442 * 217.10323 * 21 20 18 23 23 C 1.54886 * 102.75121 * 37.94061 * 22 21 20 24 24 C 1.53870 * 110.03429 * 179.97438 * 20 18 17 25 25 C 1.55159 * 102.94093 * 22.19478 * 11 10 9 26 26 H 1.09002 * 111.00506 * 82.57323 * 25 11 10 27 27 O 1.42902 * 111.00409 * 206.38172 * 25 11 10 28 28 C 1.47429 * 125.64905 * 13.31518 * 9 7 2 29 29 H 0.97003 * 119.99885 * 185.84816 * 1 2 3 30 30 H 1.09000 * 109.88468 * 300.43865 * 10 9 7 31 31 H 1.09006 * 109.88142 * 61.44984 * 10 9 7 32 32 H 0.97001 * 119.99894 * 93.54814 * 13 11 10 33 33 H 1.09000 * 109.47690 * 300.00678 * 16 14 13 34 34 H 1.09001 * 109.46701 * 60.00461 * 16 14 13 35 35 H 0.97003 * 119.99956 * 0.02562 * 17 16 14 36 36 H 1.09000 * 110.01434 * 58.60772 * 20 18 17 37 37 H 1.09005 * 110.48665 * 335.78326 * 21 20 18 38 38 H 1.09003 * 110.48684 * 98.42513 * 21 20 18 39 39 H 1.09006 * 110.75399 * 279.62465 * 22 21 20 40 40 H 1.09000 * 110.75464 * 156.25527 * 22 21 20 41 41 H 1.08992 * 110.49142 * 203.37906 * 23 22 21 42 42 H 1.08998 * 110.59757 * 80.78787 * 23 22 21 43 43 H 1.08995 * 110.03454 * 238.56749 * 24 20 18 44 44 H 1.09000 * 110.03342 * 359.95246 * 24 20 18 45 45 H 0.96703 * 114.00123 * 179.97438 * 27 25 11 46 46 H 1.09001 * 110.36546 * 274.74640 * 28 9 7 47 47 H 1.08995 * 110.36676 * 37.06734 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 3.5477 1.4403 0.7001 6 1 1.4476 2.6527 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0002 -1.2539 0.4290 9 7 1.4398 -2.3223 -0.5425 10 6 1.9208 -3.7003 -0.3659 11 6 0.9848 -4.6200 -1.1781 12 1 1.5523 -5.4093 -1.6710 13 7 -0.0548 -5.1911 -0.3182 14 6 0.1856 -6.3270 0.3660 15 8 1.2628 -6.8762 0.2704 16 6 -0.8835 -6.9143 1.2510 17 7 -0.3796 -8.1377 1.8797 18 6 -1.1681 -8.8385 2.7184 19 8 -2.2953 -8.4566 2.9522 20 6 -0.6495 -10.0968 3.3657 21 6 -0.3301 -11.1527 2.2874 22 6 -0.7493 -12.4958 2.9350 23 6 -2.0328 -12.1140 3.7134 24 6 -1.7319 -10.7076 4.2728 25 6 0.3682 -3.6528 -2.2229 26 1 1.0380 -3.5163 -3.0720 27 8 -0.9136 -4.1142 -2.6543 28 6 0.2379 -2.3469 -1.3959 29 1 -0.4850 -0.8357 0.0856 30 1 2.9412 -3.7875 -0.7389 31 1 1.8874 -3.9722 0.6892 32 1 -0.9162 -4.7518 -0.2415 33 1 -1.1525 -6.1936 2.0232 34 1 -1.7629 -7.1493 0.6513 35 1 0.5218 -8.4434 1.6925 36 1 0.2444 -9.8752 3.9487 37 1 -0.9131 -10.9656 1.3856 38 1 0.7359 -11.1552 2.0598 39 1 0.0231 -12.8541 3.6156 40 1 -0.9685 -13.2414 2.1707 41 1 -2.2095 -12.8180 4.5265 42 1 -2.8923 -12.0825 3.0438 43 1 -1.3628 -10.7834 5.2955 44 1 -2.6321 -10.0936 4.2456 45 1 -1.3384 -3.5416 -3.3076 46 1 -0.6626 -2.3720 -0.7823 47 1 0.2238 -1.4799 -2.0563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219672439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:15 Heat of formation + Delta-G solvation = -107.586442 kcal Electronic energy + Delta-G solvation = -27923.830482 eV Core-core repulsion = 23913.626111 eV Total energy + Delta-G solvation = -4010.204370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54001 -39.75227 -38.17504 -37.25818 -35.40038 -34.61806 -34.05267 -31.91461 -30.17005 -28.98243 -28.67408 -27.81643 -26.70731 -24.30884 -22.27313 -21.10238 -20.87907 -20.56714 -20.06428 -19.81765 -18.06240 -17.70030 -17.15290 -16.69711 -16.32384 -16.06407 -15.61015 -15.45001 -14.97964 -14.73664 -14.47141 -13.97399 -13.79738 -13.64605 -13.58972 -13.31073 -12.99427 -12.84379 -12.62638 -12.39627 -11.99065 -11.71117 -11.64231 -11.42330 -11.40046 -11.36447 -11.09421 -10.87322 -10.79917 -10.63195 -10.51509 -10.10546 -9.97578 -9.88852 -9.86875 -9.47480 -9.31911 -8.87334 -8.52857 -7.09640 -6.19523 -3.24173 2.45718 2.61490 2.73787 3.42227 3.46716 3.47894 3.64901 4.16108 4.19519 4.27558 4.43987 4.53229 4.70911 4.89744 4.96392 5.04923 5.13753 5.16072 5.17553 5.22928 5.25000 5.27895 5.33445 5.35427 5.46550 5.52715 5.52997 5.61518 5.78173 5.84387 5.86377 5.90809 5.98935 6.04518 6.18701 6.24563 6.48514 6.60492 6.76492 6.80792 7.33776 7.56445 7.64884 7.77569 8.04796 8.21774 8.37215 8.89561 9.69938 10.20228 11.13499 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022083 B = 0.002332 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.648255 B =12006.105505 C =12409.257747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.026 4.026 3 Si 1.069 2.931 4 H -0.293 1.293 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.337 4.337 8 H 0.070 0.930 9 N -0.600 5.600 10 C 0.127 3.873 11 C 0.146 3.854 12 H 0.095 0.905 13 N -0.693 5.693 14 C 0.510 3.490 15 O -0.548 6.548 16 C 0.099 3.901 17 N -0.715 5.715 18 C 0.520 3.480 19 O -0.541 6.541 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.120 4.120 25 C 0.074 3.926 26 H 0.077 0.923 27 O -0.563 6.563 28 C 0.118 3.882 29 H 0.268 0.732 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.408 0.592 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.412 0.588 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.381 0.619 46 H 0.035 0.965 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.616 -21.024 1.326 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.227 4.227 3 Si 0.898 3.102 4 H -0.220 1.220 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.464 4.464 8 H 0.088 0.912 9 N -0.329 5.329 10 C 0.000 4.000 11 C 0.040 3.960 12 H 0.113 0.887 13 N -0.343 5.343 14 C 0.296 3.704 15 O -0.427 6.427 16 C -0.028 4.028 17 N -0.370 5.370 18 C 0.307 3.693 19 O -0.418 6.418 20 C -0.133 4.133 21 C -0.154 4.154 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.157 4.157 25 C 0.013 3.987 26 H 0.095 0.905 27 O -0.367 6.367 28 C -0.008 4.008 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.244 0.756 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.250 0.750 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.228 0.772 46 H 0.052 0.948 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.621 -19.857 1.803 20.111 hybrid contribution 0.194 -0.901 -0.319 0.976 sum -2.427 -20.759 1.484 20.953 Atomic orbital electron populations 1.70788 1.06575 1.30195 1.48532 1.25768 0.96474 1.01029 0.99426 0.83453 0.74482 0.75686 0.76532 1.22025 1.21836 1.21579 1.19821 0.99494 0.87474 1.39616 0.91241 1.44431 1.30815 1.01225 1.56387 1.21764 0.95525 0.85236 0.97453 1.22021 0.88958 0.94995 0.89985 0.88673 1.45581 1.18168 1.24962 1.45603 1.20387 0.88608 0.80932 0.80514 1.90670 1.25516 1.61387 1.65083 1.21056 0.96151 0.88308 0.97287 1.45711 1.18853 1.25432 1.47009 1.20618 0.85341 0.84966 0.78410 1.90679 1.19332 1.69783 1.61996 1.21944 1.00682 0.92835 0.97864 1.22376 1.01863 0.93793 0.97373 1.22503 0.97658 0.96626 0.99337 1.22373 0.97878 0.96278 0.99665 1.22183 0.99335 0.96349 0.97862 1.23497 0.84715 0.94868 0.95613 0.90476 1.86371 1.33115 1.53155 1.64107 1.22233 0.91202 0.94587 0.92815 0.91994 0.94279 0.94840 0.75618 0.88254 0.88346 0.75008 0.88198 0.91066 0.90642 0.91185 0.91303 0.91525 0.91513 0.91385 0.89126 0.77198 0.94779 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 12.82 55.49 0.71 -26.20 16 2 C -0.03 -0.72 5.09 -17.43 -0.09 -0.81 16 3 Si 1.07 24.90 30.00 -169.99 -5.10 19.80 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.34 -9.28 10.05 -15.06 -0.15 -9.43 16 8 H 0.07 1.93 7.96 -52.49 -0.42 1.51 16 9 N -0.60 -14.58 3.33 -169.94 -0.57 -15.15 16 10 C 0.13 2.63 6.98 -3.07 -0.02 2.61 16 11 C 0.15 2.50 3.13 -66.09 -0.21 2.29 16 12 H 0.10 1.59 7.69 -51.93 -0.40 1.19 16 13 N -0.69 -10.73 4.79 -52.03 -0.25 -10.98 16 14 C 0.51 7.61 7.90 -10.99 -0.09 7.52 16 15 O -0.55 -9.40 15.39 5.55 0.09 -9.32 16 16 C 0.10 1.24 6.15 -5.19 -0.03 1.21 16 17 N -0.72 -8.42 5.47 -61.47 -0.34 -8.76 16 18 C 0.52 6.29 6.99 -10.99 -0.08 6.21 16 19 O -0.54 -8.32 15.21 5.56 0.08 -8.23 16 20 C -0.11 -1.00 3.30 -90.65 -0.30 -1.29 16 21 C -0.12 -0.87 6.31 -25.07 -0.16 -1.03 16 22 C -0.12 -0.80 6.91 -24.74 -0.17 -0.98 16 23 C -0.12 -0.91 6.83 -25.05 -0.17 -1.08 16 24 C -0.12 -1.05 6.40 -25.59 -0.16 -1.21 16 25 C 0.07 1.22 4.23 -24.47 -0.10 1.11 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 27 O -0.56 -7.92 12.65 -35.23 -0.45 -8.37 16 28 C 0.12 2.51 4.94 -2.41 -0.01 2.50 16 29 H 0.27 7.80 5.83 -40.82 -0.24 7.56 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 32 H 0.41 6.04 8.21 -40.82 -0.34 5.70 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.41 4.60 7.44 -40.82 -0.30 4.29 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 1.00 6.39 -51.93 -0.33 0.67 16 45 H 0.38 3.92 9.12 45.56 0.42 4.33 16 46 H 0.03 0.78 6.84 -51.93 -0.36 0.42 16 47 H 0.06 1.36 7.73 -51.93 -0.40 0.96 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -33.71 378.85 -8.49 -42.20 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.64 Total: 11.66 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.74 Total: 7.63 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.44 Total: -61.08 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.28 Total: -25.92 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.10 Total: 19.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.71 -8.49 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219672439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.389 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds