Wall clock time and date at job start Fri Apr 10 2020 18:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 120.00012 * 2 1 4 4 H 1.48500 * 109.47452 * 239.99743 * 3 2 1 5 5 H 1.48497 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48514 * 109.46892 * 119.99890 * 3 2 1 7 7 C 1.38955 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99775 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99776 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99688 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00211 * 0.02562 * 10 9 7 12 12 C 1.50710 * 119.99764 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46867 * 180.02562 * 12 10 9 14 14 C 1.47846 * 111.00020 * 69.87419 * 13 12 10 15 15 C 1.54908 * 104.89238 * 213.57993 * 14 13 12 16 16 C 1.55422 * 101.52379 * 37.06612 * 15 14 13 17 17 H 1.09004 * 110.69257 * 82.75585 * 16 15 14 18 18 N 1.46498 * 110.84743 * 205.90541 * 16 15 14 19 19 C 1.34774 * 120.00061 * 268.71473 * 18 16 15 20 20 O 1.21285 * 120.00021 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00442 * 179.97438 * 19 18 16 22 22 C 1.52995 * 109.47480 * 179.97438 * 21 19 18 23 23 H 1.09000 * 110.45887 * 52.39469 * 22 21 19 24 24 C 1.54505 * 110.51303 * 174.99815 * 22 21 19 25 25 C 1.54478 * 104.06470 * 118.64591 * 24 22 21 26 26 O 1.44432 * 104.80153 * 23.98118 * 25 24 22 27 27 C 1.44422 * 105.27360 * 319.48861 * 26 25 24 28 28 C 1.47448 * 111.00041 * 309.03289 * 13 12 10 29 29 H 0.96991 * 119.99965 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00423 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47103 * 60.00764 * 12 10 9 32 32 H 1.08999 * 109.46834 * 300.00110 * 12 10 9 33 33 H 1.09002 * 110.37464 * 332.46590 * 14 13 12 34 34 H 1.08999 * 110.37318 * 94.69366 * 14 13 12 35 35 H 1.08998 * 110.98718 * 155.22204 * 15 14 13 36 36 H 1.08998 * 110.98705 * 279.03118 * 15 14 13 37 37 H 0.96999 * 120.00479 * 88.70484 * 18 16 15 38 38 H 1.09000 * 109.47271 * 299.99930 * 21 19 18 39 39 H 1.09005 * 109.47094 * 59.99851 * 21 19 18 40 40 H 1.09003 * 110.51400 * 237.29090 * 24 22 21 41 41 H 1.08997 * 110.51355 * 0.02562 * 24 22 21 42 42 H 1.09000 * 110.37381 * 142.80970 * 25 24 22 43 43 H 1.09007 * 110.37686 * 265.04173 * 25 24 22 44 44 H 1.09003 * 110.37226 * 281.68406 * 27 26 25 45 45 H 1.09001 * 110.37329 * 159.34446 * 27 26 25 46 46 H 1.08999 * 109.88737 * 242.66366 * 28 13 12 47 47 H 1.09000 * 109.88899 * 3.85249 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8630 -0.0022 13 7 2.1984 -5.9795 -0.0027 14 6 2.9037 -6.0742 1.2933 15 6 4.3243 -6.5791 0.9374 16 6 4.5909 -5.8375 -0.4022 17 1 4.9442 -4.8231 -0.2172 18 7 5.5515 -6.5766 -1.2251 19 6 6.8692 -6.3128 -1.1234 20 8 7.2598 -5.4632 -0.3511 21 6 7.8575 -7.0735 -1.9694 22 6 9.2743 -6.5841 -1.6631 23 1 9.4651 -6.6169 -0.5904 24 6 10.3168 -7.4329 -2.4245 25 6 11.0322 -6.4157 -3.3409 26 8 10.8441 -5.1389 -2.6924 27 6 9.4831 -5.1543 -2.2094 28 6 3.2007 -5.8173 -1.0719 29 1 -0.4849 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0005 31 1 0.6169 -4.9202 -0.8920 32 1 0.6175 -4.9213 0.8880 33 1 2.9570 -5.0948 1.7687 34 1 2.4008 -6.7860 1.9478 35 1 5.0456 -6.2843 1.6996 36 1 4.3300 -7.6595 0.7938 37 1 5.2392 -7.2560 -1.8430 38 1 7.7840 -8.1378 -1.7456 39 1 7.6363 -6.9079 -3.0239 40 1 11.0244 -7.8835 -1.7285 41 1 9.8229 -8.2010 -3.0196 42 1 12.0938 -6.6515 -3.4137 43 1 10.5765 -6.4109 -4.3311 44 1 8.7886 -4.9548 -3.0255 45 1 9.3548 -4.4212 -1.4130 46 1 3.1200 -6.6390 -1.7835 47 1 3.0484 -4.8660 -1.5817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265302050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:47 Heat of formation + Delta-G solvation = -111.660868 kcal Electronic energy + Delta-G solvation = -28224.384809 eV Core-core repulsion = 24214.003759 eV Total energy + Delta-G solvation = -4010.381051 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32913 -39.62680 -38.74032 -37.03814 -34.35203 -33.76855 -33.68285 -31.46110 -30.80540 -29.96800 -28.43073 -27.09747 -26.06395 -24.18376 -23.13482 -21.48743 -21.00921 -20.50596 -20.11481 -19.16063 -17.90553 -17.46424 -16.59128 -16.30776 -16.02458 -15.77316 -15.53365 -15.25620 -14.84744 -14.58272 -14.42177 -14.11462 -13.84376 -13.63157 -13.56665 -12.98268 -12.78279 -12.60494 -12.35231 -12.28442 -11.89078 -11.74358 -11.55181 -11.47629 -11.25302 -11.20608 -11.05267 -10.96406 -10.85824 -10.85387 -10.48689 -10.42110 -10.26835 -9.95167 -9.71223 -9.50695 -9.01984 -8.84256 -8.03055 -7.71319 -6.47711 -3.88895 2.70447 3.16318 3.20958 3.23150 3.28085 3.80201 3.81674 4.13584 4.27054 4.37073 4.49404 4.61635 4.77881 4.82263 4.94745 5.01093 5.06178 5.09211 5.18454 5.20998 5.28145 5.38717 5.46093 5.47437 5.54475 5.67232 5.71082 5.75443 5.84015 5.86782 5.99915 6.02880 6.03760 6.14614 6.22432 6.28940 6.40370 6.50000 6.62655 6.83693 7.21205 7.26655 7.49564 7.61042 7.98278 8.32956 8.53205 9.10929 9.46222 9.96464 10.68881 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012318 B = 0.002944 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.581489 B = 9507.915495 C =11374.081071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.554 5.554 10 C 0.403 3.597 11 O -0.591 6.591 12 C 0.033 3.967 13 N -0.505 5.505 14 C 0.044 3.956 15 C -0.132 4.132 16 C 0.133 3.867 17 H 0.122 0.878 18 N -0.722 5.722 19 C 0.508 3.492 20 O -0.533 6.533 21 C -0.133 4.133 22 C -0.105 4.105 23 H 0.093 0.907 24 C -0.152 4.152 25 C 0.042 3.958 26 O -0.378 6.378 27 C 0.053 3.947 28 C 0.049 3.951 29 H 0.273 0.727 30 H 0.393 0.607 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.395 0.605 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.102 0.898 46 H 0.060 0.940 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.823 -18.060 -5.395 21.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.120 0.880 9 N -0.190 5.190 10 C 0.189 3.811 11 O -0.478 6.478 12 C -0.100 4.100 13 N -0.227 5.227 14 C -0.084 4.084 15 C -0.172 4.172 16 C 0.028 3.972 17 H 0.140 0.860 18 N -0.373 5.373 19 C 0.293 3.707 20 O -0.409 6.409 21 C -0.174 4.174 22 C -0.125 4.125 23 H 0.111 0.889 24 C -0.190 4.190 25 C -0.034 4.034 26 O -0.296 6.296 27 C -0.024 4.024 28 C -0.080 4.080 29 H 0.083 0.917 30 H 0.226 0.774 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.229 0.771 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.120 0.880 46 H 0.078 0.922 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.611 -17.537 -4.896 21.595 hybrid contribution -0.319 1.090 -0.190 1.151 sum 11.293 -16.448 -5.086 20.589 Atomic orbital electron populations 1.69598 1.05967 1.28436 1.49932 1.25284 0.95618 0.99836 0.97010 0.85930 0.78809 0.80402 0.79189 1.19842 1.20905 1.19829 1.19674 0.93377 0.82332 1.47815 0.87952 1.42006 1.09283 1.04878 1.62785 1.20879 0.89003 0.85981 0.85256 1.90491 1.13599 1.86956 1.56759 1.22252 0.95778 0.88408 1.03536 1.63983 1.15941 1.38948 1.03869 1.22935 0.92678 1.00914 0.91831 1.23014 0.96752 0.99503 0.97894 1.22440 0.88265 0.97430 0.89020 0.85994 1.46106 1.06432 1.41139 1.43586 1.20601 0.83147 0.83513 0.83406 1.90738 1.78792 1.33061 1.38330 1.21783 0.93736 1.01038 1.00797 1.22287 0.92784 0.95301 1.02081 0.88863 1.23036 0.98284 0.98604 0.99092 1.23396 1.01046 0.83395 0.95613 1.89149 1.30072 1.35285 1.75136 1.23534 0.83085 0.97124 0.98610 1.22858 0.89358 1.01422 0.94323 0.91699 0.77391 0.89186 0.89324 0.91951 0.90958 0.91072 0.91515 0.77149 0.88622 0.88795 0.90461 0.90326 0.89323 0.92409 0.92469 0.87965 0.92160 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 13.05 55.50 0.72 -23.45 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 10 C 0.40 8.95 6.42 -10.98 -0.07 8.88 16 11 O -0.59 -14.53 10.36 5.55 0.06 -14.48 16 12 C 0.03 0.55 5.84 -4.97 -0.03 0.53 16 13 N -0.50 -8.06 5.41 -232.68 -1.26 -9.32 16 14 C 0.04 0.70 6.16 -2.30 -0.01 0.68 16 15 C -0.13 -1.96 6.79 -24.44 -0.17 -2.13 16 16 C 0.13 2.14 2.77 -65.95 -0.18 1.95 16 17 H 0.12 2.59 5.95 -51.93 -0.31 2.28 16 18 N -0.72 -8.88 5.18 -51.89 -0.27 -9.15 16 19 C 0.51 6.65 7.65 -10.99 -0.08 6.57 16 20 O -0.53 -9.45 14.68 5.55 0.08 -9.37 16 21 C -0.13 -1.14 4.92 -27.89 -0.14 -1.28 16 22 C -0.11 -1.04 2.70 -89.06 -0.24 -1.28 16 23 H 0.09 1.05 7.90 -51.93 -0.41 0.64 16 24 C -0.15 -1.11 6.74 -25.17 -0.17 -1.28 16 25 C 0.04 0.36 7.63 37.93 0.29 0.65 16 26 O -0.38 -4.75 11.65 -35.23 -0.41 -5.16 16 27 C 0.05 0.64 6.38 37.93 0.24 0.88 16 28 C 0.05 0.78 5.72 -2.83 -0.02 0.76 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 33 H 0.06 1.17 6.58 -51.93 -0.34 0.82 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.39 3.51 8.37 -40.82 -0.34 3.17 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.65 7.96 -51.93 -0.41 0.24 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.42 7.73 -51.93 -0.40 0.02 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.66 7.74 -51.93 -0.40 0.26 16 45 H 0.10 1.44 7.80 -51.93 -0.40 1.03 16 46 H 0.06 0.80 7.72 -51.93 -0.40 0.39 16 47 H 0.08 1.50 5.83 -51.93 -0.30 1.20 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -32.21 371.56 -8.74 -40.94 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -7.36 Total: 14.88 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -0.82 Total: 7.08 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.86 Total: -55.58 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.27 Total: -29.00 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.21 -8.74 -40.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265302050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.716 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds