Wall clock time and date at job start Fri Apr 10 2020 18:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 120.00012 * 2 1 4 4 H 1.48500 * 109.47452 * 239.99743 * 3 2 1 5 5 H 1.48497 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48514 * 109.46892 * 119.99890 * 3 2 1 7 7 C 1.38955 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99775 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99776 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99688 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00211 * 0.02562 * 10 9 7 12 12 C 1.50710 * 119.99764 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46867 * 180.02562 * 12 10 9 14 14 C 1.47846 * 111.00020 * 69.87419 * 13 12 10 15 15 C 1.54908 * 104.89238 * 213.57993 * 14 13 12 16 16 C 1.55422 * 101.52379 * 37.06612 * 15 14 13 17 17 H 1.09004 * 110.69257 * 82.75585 * 16 15 14 18 18 N 1.46498 * 110.84743 * 205.90541 * 16 15 14 19 19 C 1.34774 * 120.00061 * 268.71473 * 18 16 15 20 20 O 1.21285 * 120.00021 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00442 * 179.97438 * 19 18 16 22 22 C 1.52995 * 109.47480 * 179.97438 * 21 19 18 23 23 H 1.09000 * 110.45887 * 52.39469 * 22 21 19 24 24 C 1.54505 * 110.51303 * 174.99815 * 22 21 19 25 25 C 1.54478 * 104.06470 * 118.64591 * 24 22 21 26 26 O 1.44432 * 104.80153 * 23.98118 * 25 24 22 27 27 C 1.44422 * 105.27360 * 319.48861 * 26 25 24 28 28 C 1.47448 * 111.00041 * 309.03289 * 13 12 10 29 29 H 0.96991 * 119.99965 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00423 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47103 * 60.00764 * 12 10 9 32 32 H 1.08999 * 109.46834 * 300.00110 * 12 10 9 33 33 H 1.09002 * 110.37464 * 332.46590 * 14 13 12 34 34 H 1.08999 * 110.37318 * 94.69366 * 14 13 12 35 35 H 1.08998 * 110.98718 * 155.22204 * 15 14 13 36 36 H 1.08998 * 110.98705 * 279.03118 * 15 14 13 37 37 H 0.96999 * 120.00479 * 88.70484 * 18 16 15 38 38 H 1.09000 * 109.47271 * 299.99930 * 21 19 18 39 39 H 1.09005 * 109.47094 * 59.99851 * 21 19 18 40 40 H 1.09003 * 110.51400 * 237.29090 * 24 22 21 41 41 H 1.08997 * 110.51355 * 0.02562 * 24 22 21 42 42 H 1.09000 * 110.37381 * 142.80970 * 25 24 22 43 43 H 1.09007 * 110.37686 * 265.04173 * 25 24 22 44 44 H 1.09003 * 110.37226 * 281.68406 * 27 26 25 45 45 H 1.09001 * 110.37329 * 159.34446 * 27 26 25 46 46 H 1.08999 * 109.88737 * 242.66366 * 28 13 12 47 47 H 1.09000 * 109.88899 * 3.85249 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8630 -0.0022 13 7 2.1984 -5.9795 -0.0027 14 6 2.9037 -6.0742 1.2933 15 6 4.3243 -6.5791 0.9374 16 6 4.5909 -5.8375 -0.4022 17 1 4.9442 -4.8231 -0.2172 18 7 5.5515 -6.5766 -1.2251 19 6 6.8692 -6.3128 -1.1234 20 8 7.2598 -5.4632 -0.3511 21 6 7.8575 -7.0735 -1.9694 22 6 9.2743 -6.5841 -1.6631 23 1 9.4651 -6.6169 -0.5904 24 6 10.3168 -7.4329 -2.4245 25 6 11.0322 -6.4157 -3.3409 26 8 10.8441 -5.1389 -2.6924 27 6 9.4831 -5.1543 -2.2094 28 6 3.2007 -5.8173 -1.0719 29 1 -0.4849 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0005 31 1 0.6169 -4.9202 -0.8920 32 1 0.6175 -4.9213 0.8880 33 1 2.9570 -5.0948 1.7687 34 1 2.4008 -6.7860 1.9478 35 1 5.0456 -6.2843 1.6996 36 1 4.3300 -7.6595 0.7938 37 1 5.2392 -7.2560 -1.8430 38 1 7.7840 -8.1378 -1.7456 39 1 7.6363 -6.9079 -3.0239 40 1 11.0244 -7.8835 -1.7285 41 1 9.8229 -8.2010 -3.0196 42 1 12.0938 -6.6515 -3.4137 43 1 10.5765 -6.4109 -4.3311 44 1 8.7886 -4.9548 -3.0255 45 1 9.3548 -4.4212 -1.4130 46 1 3.1200 -6.6390 -1.7835 47 1 3.0484 -4.8660 -1.5817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265302050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:46 Heat of formation + Delta-G solvation = -138.604429 kcal Electronic energy + Delta-G solvation = -28225.553170 eV Core-core repulsion = 24214.003759 eV Total energy + Delta-G solvation = -4011.549411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49565 -40.87095 -39.86535 -38.58290 -36.01317 -35.29924 -34.53613 -33.36596 -32.15882 -30.73828 -29.63643 -28.35833 -27.41359 -25.91863 -23.91657 -22.52539 -22.42001 -21.63494 -21.03993 -20.84648 -19.87025 -18.45186 -18.04133 -17.39151 -17.22479 -16.76268 -16.62101 -16.53860 -16.31887 -16.03846 -15.76960 -15.64796 -15.29455 -14.85890 -14.50176 -14.36049 -13.96404 -13.76654 -13.73370 -13.47020 -13.27393 -13.04421 -12.93593 -12.57284 -12.50772 -12.47597 -12.40259 -12.24128 -12.17320 -12.14488 -11.88450 -11.74875 -11.53844 -11.44475 -10.82309 -10.78757 -10.72087 -10.04033 -9.99074 -9.26126 -8.50094 -5.98773 1.33466 1.36345 1.46594 1.68585 2.00636 2.19828 2.25458 3.01934 3.05223 3.16827 3.23088 3.54030 3.68903 3.75939 3.78133 3.84909 4.04602 4.19691 4.22466 4.31197 4.41556 4.44388 4.47330 4.50744 4.53515 4.58406 4.66742 4.74179 4.76038 4.85406 4.86182 4.89681 4.92453 4.99218 5.13461 5.13833 5.22549 5.26332 5.36741 5.63760 5.83361 5.84699 5.87320 5.99480 6.55838 6.64105 7.09218 7.36183 7.52773 8.08445 8.65764 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.012318 B = 0.002944 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.581489 B = 9507.915495 C =11374.081071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.986 3.014 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.276 1.276 7 C -0.331 4.331 8 H 0.074 0.926 9 N -0.570 5.570 10 C 0.405 3.595 11 O -0.616 6.616 12 C 0.042 3.958 13 N -0.489 5.489 14 C 0.043 3.957 15 C -0.122 4.122 16 C 0.137 3.863 17 H 0.061 0.939 18 N -0.708 5.708 19 C 0.499 3.501 20 O -0.590 6.590 21 C -0.119 4.119 22 C -0.104 4.104 23 H 0.070 0.930 24 C -0.140 4.140 25 C 0.032 3.968 26 O -0.408 6.408 27 C 0.050 3.950 28 C 0.053 3.947 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.023 0.977 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.100 0.900 37 H 0.417 0.583 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.100 0.900 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.484 -21.371 -6.828 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.810 3.190 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.201 1.201 7 C -0.461 4.461 8 H 0.092 0.908 9 N -0.207 5.207 10 C 0.192 3.808 11 O -0.504 6.504 12 C -0.090 4.090 13 N -0.211 5.211 14 C -0.085 4.085 15 C -0.161 4.161 16 C 0.030 3.970 17 H 0.079 0.921 18 N -0.360 5.360 19 C 0.288 3.712 20 O -0.470 6.470 21 C -0.159 4.159 22 C -0.124 4.124 23 H 0.089 0.911 24 C -0.177 4.177 25 C -0.044 4.044 26 O -0.328 6.328 27 C -0.026 4.026 28 C -0.075 4.075 29 H 0.088 0.912 30 H 0.230 0.770 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.042 0.958 34 H 0.122 0.878 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.255 0.745 38 H 0.154 0.846 39 H 0.139 0.861 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.121 0.879 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.118 0.882 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.254 -20.902 -6.360 24.577 hybrid contribution -0.129 2.068 0.248 2.087 sum 11.125 -18.835 -6.112 22.712 Atomic orbital electron populations 1.69647 1.06640 1.29344 1.50148 1.25954 0.96494 1.02196 0.96362 0.85091 0.77870 0.77247 0.78751 1.19956 1.19147 1.20116 1.19543 0.92442 0.84279 1.49867 0.90838 1.42056 1.09343 1.04868 1.64383 1.21989 0.89027 0.87202 0.82543 1.90526 1.15277 1.87707 1.56866 1.22338 0.95774 0.85255 1.05683 1.64157 1.15676 1.37394 1.03902 1.22997 0.93766 0.99728 0.91977 1.22950 0.95654 1.01065 0.96463 1.21979 0.88972 0.95320 0.90700 0.92097 1.45905 1.05779 1.40991 1.43332 1.21554 0.83764 0.82905 0.83006 1.90733 1.79653 1.35655 1.40943 1.21820 0.90860 1.02167 1.01008 1.22233 0.94742 0.94336 1.01071 0.91124 1.23010 0.97469 0.98351 0.98897 1.23707 1.02480 0.81961 0.96239 1.89111 1.30030 1.37872 1.75794 1.23449 0.83356 0.98141 0.97702 1.22847 0.89076 1.01024 0.94594 0.91239 0.76983 0.86783 0.87186 0.95809 0.87847 0.92815 0.88188 0.74525 0.84638 0.86093 0.89786 0.87010 0.87875 0.90947 0.92232 0.91663 0.88167 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 3 Si 0.99 44.09 29.55 68.60 2.03 46.11 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 8 H 0.07 4.54 7.16 -2.91 -0.02 4.52 16 9 N -0.57 -28.87 5.29 -306.97 -1.62 -30.50 16 10 C 0.41 18.50 6.42 87.66 0.56 19.07 16 11 O -0.62 -32.04 10.36 -3.07 -0.03 -32.07 16 12 C 0.04 1.37 5.84 85.56 0.50 1.87 16 13 N -0.49 -14.67 5.41 -890.06 -4.82 -19.49 16 14 C 0.04 1.32 6.16 86.77 0.53 1.85 16 15 C -0.12 -3.51 6.79 32.08 0.22 -3.29 16 16 C 0.14 4.42 2.77 46.27 0.13 4.55 16 17 H 0.06 2.78 5.95 -2.38 -0.01 2.77 16 18 N -0.71 -16.39 5.18 -436.48 -2.26 -18.65 16 19 C 0.50 12.86 7.65 87.66 0.67 13.53 16 20 O -0.59 -22.26 14.68 -3.05 -0.04 -22.31 16 21 C -0.12 -1.69 4.92 29.85 0.15 -1.55 16 22 C -0.10 -1.95 2.70 -9.78 -0.03 -1.98 16 23 H 0.07 1.64 7.90 -2.39 -0.02 1.62 16 24 C -0.14 -1.61 6.74 31.61 0.21 -1.40 16 25 C 0.03 0.48 7.63 72.48 0.55 1.03 16 26 O -0.41 -10.42 11.65 -148.98 -1.74 -12.16 16 27 C 0.05 1.27 6.38 72.49 0.46 1.73 16 28 C 0.05 1.62 5.72 86.65 0.50 2.12 16 29 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 31 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.11 3.21 8.08 -2.39 -0.02 3.19 16 33 H 0.02 0.90 6.58 -2.39 -0.02 0.89 16 34 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.42 5.91 8.37 -92.71 -0.78 5.13 16 38 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.12 1.16 7.96 -2.38 -0.02 1.14 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.11 0.59 7.73 -2.39 -0.02 0.57 16 42 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.06 1.42 7.74 -2.39 -0.02 1.40 16 45 H 0.06 2.08 7.80 -2.39 -0.02 2.06 16 46 H 0.10 2.28 7.72 -2.39 -0.02 2.26 16 47 H 0.04 1.62 5.83 -2.39 -0.01 1.61 16 Total: -1.00 -77.34 371.56 -2.97 -80.31 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: -0.51 Total: 38.86 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 5.74 Total: 19.35 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -8.42 Total: -118.09 kcal Atomic # 8 Polarization: -64.73 SS G_CDS: -1.81 Total: -66.54 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -77.34 -2.97 -80.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265302050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.293 kcal (2) G-P(sol) polarization free energy of solvation -77.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds